KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:20 2014 Check: 00 .. Name: ENSTTRP00000009382/1-1204 Len: 1236 Check: 397 Weight: 1.00 Name: ENSBTAP00000009383/1-1199 Len: 1236 Check: 755 Weight: 1.00 Name: ENSP00000349877/1-1204 Len: 1236 Check: 9243 Weight: 1.00 Name: bmy_02668T0/1-1235 Len: 1236 Check: 8296 Weight: 1.00 Name: BACU016621/1-1141 Len: 1236 Check: 6892 Weight: 1.00 // 1 50 ENSTTRP00000009382/1-1204 MAAAAAAAAV GNAVPCGARP CGAQPAGQPK PRPLPRTLLA AGTALIESGD ENSBTAP00000009383/1-1199 ---MAAEAVV GNAVPCGAR- ----PAGQPK PRPQQRTLLA AGPALIQSGD ENSP00000349877/1-1204 ---MAAAAAV GNAVPCGARP CGVRPDGQPK PGPQPRALLA AGPALIANGD bmy_02668T0/1-1235 -MAAAAAAAV GNAVPCGARP CGPQPAGQPK PRPLPRTLLA AGPALIESGD BACU016621/1-1141 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009382/1-1204 ELVAAVWPYR RLALLRRLTV LPFVGLLYPA -LGAATAGCW GWGSSWTQIL ENSBTAP00000009383/1-1199 ELVAAVWPYR RLALLRRLTL LPFVGLLYPA WLGSAATGFW GWGSSWAQIP ENSP00000349877/1-1204 ELVAAVWPYR RLALLRRLTV LPFAGLLYPA WLGAAAAGCW GWGSSWVQIP bmy_02668T0/1-1235 ELVAAVWPYR RLPLLRRLTV LPFVGLLYPA WLGAAAAGCW GWGSSWTQIP BACU016621/1-1141 ---------- ------RRRV LPFVGLLYPA WLGAAAAGCW GWGSSWTQIP 101 150 ENSTTRP00000009382/1-1204 EAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXEFDPS KATFVKVVPT ENSBTAP00000009383/1-1199 EAALLVLATI CLAHALTVLS GHWSVHAHCA LTCTPEYDAR KATFVKVVPT ENSP00000349877/1-1204 EAALLVLATI CLAHALTVLS GHWSVHAHCA LTCTPEYDPS KATFVKVVPT bmy_02668T0/1-1235 EAALLVLATI CLAHALTVLS GHWSVHAHCA LTCTPEFDPS KATFVKVVPT BACU016621/1-1141 EAALLVLATI CLAHALTVLS GHWSVHAHCA LTCTPEFDPS KATFVKVVPT 151 200 ENSTTRP00000009382/1-1204 PNNGSTELVA LHRDEGEDGQ EVLSFEFQKI KYSYDALEKK RFLPVAFPVG ENSBTAP00000009383/1-1199 PNNGSTELVA LHRDEGEDGQ EVLSFEFQKI KYSYDALEKK RFLPVAFPVG ENSP00000349877/1-1204 PNNGSTELVA LHRNEGEDGL EVLSFEFQKI KYSYDALEKK QFLPVAFPVG bmy_02668T0/1-1235 PNNGSTELVA LHRDEGEDGQ DVLSFEFQKI KYSYDALEKK RFLPVAFPVG BACU016621/1-1141 PNNGSTELVA LHRDEGEDGQ DVLSFEFQKI KYSYDALEKK RFLPVAFPVG 201 250 ENSTTRP00000009382/1-1204 NLFSFYQSNR GFQEDSEIRA AEKKFGSNRA EMVVPDFSEL FKERATAPFF ENSBTAP00000009383/1-1199 NAFSFYQSNR GFQEDSEIRA AEKKFGSNKA EMVVPDFSEL FKERATAPFF ENSP00000349877/1-1204 NAFSYYQSNR GFQEDSEIRA AEKKFGSNKA EMVVPDFSEL FKERATAPFF bmy_02668T0/1-1235 NPFSFYQSNR GFQEDSEIRA AEKKFGSNKA EMVVPDFSEL FKERATAPFF BACU016621/1-1141 NPFSFYQSNR GFQEDSEIRA AEKKFGSNKA EMVVPDFSEL FKERATAPFF 251 300 ENSTTRP00000009382/1-1204 VFQVFCVGLW CLDEYWYYSV FTLSMLVAFE ASLVQQQMRN MSEIRKMGNK ENSBTAP00000009383/1-1199 VFQVFCVGLW CLDEYWYYSV FTLSMLVAFE ASLVQQQMRN MSEIRKMGNK ENSP00000349877/1-1204 VFQVFCVGLW CLDEYWYYSV FTLSMLVAFE ASLVQQQMRN MSEIRKMGNK bmy_02668T0/1-1235 VFQVFCVGLW CLDEYWYYSV FTLSMLVAFE ASLVQQQMRN MSEIRKMGNK BACU016621/1-1141 VFQVFCVGLW CLDEYWYYSV FTLSMLVAFE ASLVQQQMRN MSEIRKMGNK 301 350 ENSTTRP00000009382/1-1204 PHMIQVYRSR KWRPVASNEI VPGDIVSIGR SPQENLVPCD VLLLRGRCIV ENSBTAP00000009383/1-1199 PHMIQVYRSR KWRPIASDEI VPGDIVSIGR SPQENLVPCD VLLLRGRCIV ENSP00000349877/1-1204 PHMIQVYRSR KWRPIASDEI VPGDIVSIGR SPQENLVPCD VLLLRGRCIV bmy_02668T0/1-1235 PHMIQVYRSR KWRPVASSEI VPGDIVSIGR SPQENLVPCD VLLLRGRCIV BACU016621/1-1141 PHMIQVYRSR KWRPVASNEI VPGDIVSIGR SPQENLVPCD VLLLRGRCIV 351 400 ENSTTRP00000009382/1-1204 DEAMLTGESV PQMKEPIEDL SPNRVLDLQA DSRLHVIFGG TKVVQHIPPQ ENSBTAP00000009383/1-1199 DEAMLTGESV PQMKEPIEDL SPSRVLDLQA DARLHVVFGG TKVVQHIPPQ ENSP00000349877/1-1204 DEAMLTGESV PQMKEPIEDL SPDRVLDLQA DSRLHVIFGG TKVVQHIPPQ bmy_02668T0/1-1235 DEAMLTGESV PQMKEPIEDL SPNRVLDLQA DSRLHVIFGG TKVVQHIPPQ BACU016621/1-1141 DEAMLTGESV PQMKEPIEDL SPKRVLDLQA DSRLHIIFGG TKVVQHIPPQ 401 450 ENSTTRP00000009382/1-1204 KATTGLKPVD SGCVAYVLRT GFNTSQGRSL PSVPLGVKRV TANNLETFIF ENSBTAP00000009383/1-1199 KAAAGLKPVD NGCVAYVLRT GFNTSQGKLL RTILFGVKRV TANNLETFIF ENSP00000349877/1-1204 KATTGLKPVD SGCVAYVLRT GFNTSQGKLL RTILFGVKRV TANNLETFIF bmy_02668T0/1-1235 KATTGLKPVD SGCVAYVLRT GFNTSQGKLL RTILFGVKRV TANNLETFIF BACU016621/1-1141 KATTGLKPVD SGCVAYVLRT GFNTSQGKLL RTILFGVKRV TANNLETFIF 451 500 ENSTTRP00000009382/1-1204 ILFLLVFAIA AAAYVWIEGT KDPSRNRYKL FLECTLILTS VVPPELPIEL ENSBTAP00000009383/1-1199 ILFLLVFAIA AAAYVWIEGT KDPSRNRYKL FLECTLILTS VVPPELPIEL ENSP00000349877/1-1204 ILFLLVFAIA AAAYVWIEGT KDPSRNRYKL FLECTLILTS VVPPELPIEL bmy_02668T0/1-1235 ILFLLVFAIA AAAYVWIEGT KDPSRNRYKL FLECTLILTS VVPPELPIEL BACU016621/1-1141 ILFLLVFAIA AAAYVWIEGT KDPSRNRYKL FLECTLILTS VVPPELPIEL 501 550 ENSTTRP00000009382/1-1204 SLAVNTSLIA LAKLYMYCTE PFRIPFAGKV EVCCFDKTGT LTSDSLVVRG ENSBTAP00000009383/1-1199 SLAVNTSLIA LAKLYMYCTE PFRIPFAGKV EVCCFDKTGT LTSDSLVVRG ENSP00000349877/1-1204 SLAVNTSLIA LAKLYMYCTE PFRIPFAGKV EVCCFDKTGT LTSDSLVVRG bmy_02668T0/1-1235 SLAVNTSLIA LAKLYMYCTE PFRIPFAGKV EVCCFDKTGT LTSDSLVVRG BACU016621/1-1141 SLAVNTSLIA LAKLYMYCTE PFRIPFAGKV EVCCFDKTGT LTSDSLVVRG 551 600 ENSTTRP00000009382/1-1204 VAGLRDGKEV TPVSNIPIET HRALASCHSL MQLDDGTLVG DPLEKAMLTA ENSBTAP00000009383/1-1199 VAGLRDGKEV TPVSSIPIET HRALASCHSL MQLDDGTLVG DPLEKAMLTA ENSP00000349877/1-1204 VAGLRDGKEV TPVSSIPVET HRALASCHSL MQLDDGTLVG DPLEKAMLTA bmy_02668T0/1-1235 VAGLRDGKEV TPVSNIPIET HRALASCHSL MQLDDGTLVG DPLEKAMLTA BACU016621/1-1141 VAGLRDGKEV TPVSNIPIET HRALASCHSL MQLDDGTLVG DPLEKAMLTA 601 650 ENSTTRP00000009382/1-1204 VDWTLTKDEK VFPRSIKTQG LK-HQRFHFA SALKRMSVLA SYEKLGSTDL ENSBTAP00000009383/1-1199 VDWTLTRDEK VFPRSIKTQG LKIHQRFHFA SALKRMSVLA SYEKLGSTDL ENSP00000349877/1-1204 VDWTLTKDEK VFPRSIKTQG LKIHQRFHFA SALKRMSVLA SYEKLGSTDL bmy_02668T0/1-1235 VDWTLTKDEK VFPRSIKTQG LKIHQRFHFA SALKRMSVLA SYEKLGSTDF BACU016621/1-1141 VDWTLTKDEK VFPRSIKTQG LKIHQRFHFA SALKRMSVLA SYEKLGSTDL 651 700 ENSTTRP00000009382/1-1204 CYIAAVKGAP ETLHSMFAQC PPDYHHIHTE ISREGARVLA LGYKELGHLT ENSBTAP00000009383/1-1199 CYIAAVKGAP ETLHSMFAQC PPDYHHIHTE ISREGARVLA LGYKELGHLT ENSP00000349877/1-1204 CYIAAVKGAP ETLHSMFSQC PPDYHHIHTE ISREGARVLA LGYKELGHLT bmy_02668T0/1-1235 CYIAAVKGAP ETLHSMFAQC PPDYDHIHTE ISREGARVLA LGYKELGHLT BACU016621/1-1141 CYIAAVKGAP ETLHSMFAQC PPDYHHIHTE ISREGARVLA LGYKELGHLT 701 750 ENSTTRP00000009382/1-1204 HQQARELKRE ALECNLKFVG FIVVSCPLKA DSKAVIREIQ NASHRVVMIT ENSBTAP00000009383/1-1199 HQQAREVKRE ALECNLKFVG FIVVSCPLKA DSKAVIREIQ NASHRVVMIT ENSP00000349877/1-1204 HQQAREVKRE ALECSLKFVG FIVVSCPLKA DSKAVIREIQ NASHRVVMIT bmy_02668T0/1-1235 HQQARELKRE ALECNLKFVG FIVVSCPLKA DSKAVIREIQ NASHRVVMIT BACU016621/1-1141 HQQARELKRE ALECNLKFVG FIVVSCPLKA DSKAVIREIQ NASHRVVMIT 751 800 ENSTTRP00000009382/1-1204 GDNPLTACHV A-ELHFIEKA HTLILQPPTE KGRPCEWHSI DGSIMLPLAQ ENSBTAP00000009383/1-1199 GDNPLTACHV ARELHFIEKA QTLILQPPTG KGGLCEWRSI DGSISEPLAQ ENSP00000349877/1-1204 GDNPLTACHV AQELHFIEKA HTLILQPPSE KGRQCEWRSI DGSIVLPLAR bmy_02668T0/1-1235 GDNPLTACHV AQELHFIEKA HTLILQPPTE KGRPCEWHSI DGSITLPLAQ BACU016621/1-1141 GDNPLTACHV AQELHFIEKA HTLILQPPTE RGRPCEWHSI DGSITLPLAQ 801 850 ENSTTRP00000009382/1-1204 GSPKALALDH ALCLTGDGLA HLQAEDPQLL LRLIPHVQVF ARVAPKQKEF ENSBTAP00000009383/1-1199 GSPKALAREH ALCLTGDGLA HLQAEDPQLL LRLIPYVQVF ARVAPKQKEF ENSP00000349877/1-1204 GSPKALALEY ALCLTGDGLA HLQATDPQQL LRLIPHVQVF ARVAPKQKEF bmy_02668T0/1-1235 GSPKALALDH ALCLTGDGLA HLQAEDPQLL LRLIPHVQVF ARVAPKQKEF BACU016621/1-1141 GSPKALALDH ALCLTGDGLA HLQAEDPQLL LRLIPHVQVF ARVAPKQKEF 851 900 ENSTTRP00000009382/1-1204 VITSLKELGY VTLMCGDGTN DVGALKHADV GVALLANAPE RIIERRRRPR ENSBTAP00000009383/1-1199 VITSLKELGY VTLMCGDGTN DVGALKHADV GVALLANAPE RVVERRRRPR ENSP00000349877/1-1204 VITSLKELGY VTLMCGDGTN DVGALKHADV GVALLANAPE RVVERRRRPR bmy_02668T0/1-1235 VITSLKELGY VTLMCGDGTN DVGALKHADV GVALLANAPE RVIERRRRPR BACU016621/1-1141 VITSLKELGC VTLMCGDGTN DVGALKHADV GVALLANAPE RVIERRRRPR 901 950 ENSTTRP00000009382/1-1204 DSPVLSNSGV RATSRAAKQR SGLPPSEEQL ASQRDRLSQV LRDLEDESMP ENSBTAP00000009383/1-1199 DSPILSNSGV RATSRAAKQR SGLPAPEEQL ASQRDRLSQV LRDLEDESTP ENSP00000349877/1-1204 DSPTLSNSGI RATSRTAKQR SGLPPSEEQP TSQRDRLSQV LRDLEDESTP bmy_02668T0/1-1235 DSPVLSNSGV RATSRAAKQR SGLPPSEEQL ASQRDRLSQV LRDLEDESMP BACU016621/1-1141 DSPVLSNSGV RATSRAAKQR SGLPPSEEQL ASQRDRLSQV LRDLEDESMP 951 1000 ENSTTRP00000009382/1-1204 IVKLGDASIA APFTSKLSSI QC-------- ---------- ---------- ENSBTAP00000009383/1-1199 MVKLGDASIA APFTSKLSSI QC-------- ---------- ---------- ENSP00000349877/1-1204 IVKLGDASIA APFTSKLSSI QC-------- ---------- ---------- bmy_02668T0/1-1235 IVKLGDASIA APFTSKLSSI QCSESCCRDP PLPHPSAHPA WHPRPHLPSP BACU016621/1-1141 IVKLGDASIA APFTSKLSSI QC-------- ---------- ---------- 1001 1050 ENSTTRP00000009382/1-1204 -ICHVIKQGR CTLVTTLQMF KILALNALIL AYSQSVLYLE GVKFSDFQAT ENSBTAP00000009383/1-1199 -ICHVIKQGR CTLVTTLQMF KILALNALIL AYSQSVLYLE GVKFSDFQAT ENSP00000349877/1-1204 -ICHVIKQGR CTLVTTLQMF KILALNALIL AYSQSVLYLE GVKFSDFQAT bmy_02668T0/1-1235 TVCHVIKQGR CTLVTTLQMF KILALNALIL AYSQSVLYLE GVKFSDFQAT BACU016621/1-1141 -ICHVIKQGR CTLVTTLQMF KILALNALIL AYSQSVLYLE GVKFSDFQAT 1051 1100 ENSTTRP00000009382/1-1204 LQGLLLAGCF LFISRSKPLK TLSRERPLPN IFNLYTILTV MLQFCVHFMS ENSBTAP00000009383/1-1199 LQGLLLAGCF LFISRSKPLK TLSRERPLPN IFNLYTILTV TLQFCVHFAS ENSP00000349877/1-1204 LQGLLLAGCF LFISRSKPLK TLSRERPLPN IFNLYTILTV MLQFFVHFLS bmy_02668T0/1-1235 LQGLLLAGCF LFISRSKPLK TLSQERPLPN IFNLYTILTV MLQFCVHFMS BACU016621/1-1141 LQGLLLAGCF LFISRSKPLK TLSRERPLPN IFNLYTILTV MLQFCVHFMS 1101 1150 ENSTTRP00000009382/1-1204 LVYLYSEAQA RSPEKQEQFV DLYKEFEPSL VNSTVYIMAM AMQMATFAIN ENSBTAP00000009383/1-1199 LVYLYREAQA RSPEKQEQFV DLYKEFEPSL VNSTVYIMAM AMQMATFAIN ENSP00000349877/1-1204 LVYLYREAQA RSPEKQEQFV DLYKEFEPSL VNSTVYIMAM AMQMATFAIN bmy_02668T0/1-1235 LVYLYSEAQA RSPEKQEQFV DLYKEFEPSL VNSTVYIMAM AMQMATFAIN BACU016621/1-1141 LVYLYSEAQA RSPEKQEQFV DLYKEFEPSL VNSTVYIMAM AMQMATFAIN 1151 1200 ENSTTRP00000009382/1-1204 YKGPPFMESL PENRPLVWSL AVSLLAIVGL LLGSSPEFNS QFGLVDIPVE ENSBTAP00000009383/1-1199 YKGPPFMESL PENRPLVWSL AVSLLAIVGL LLGSSPEFNS QFGLVDIPVE ENSP00000349877/1-1204 YKGPPFMESL PENKPLVWSL AVSLLAIIGL LLGSSPDFNS QFGLVDIPVE bmy_02668T0/1-1235 YKGPPFMESL PENRPLVWSL AVSLLAIVGL LLGSSPEFNS QFGLVDIPVE BACU016621/1-1141 YKGPPFMESL PENRPLVWSL AVSLLAIVGL LLGSSPEFNS QFGLVDIPVE 1201 1250 ENSTTRP00000009382/1-1204 FKLVIAQVLL LDFCLALLVD RVLQFFLGTP KLKVPS ENSBTAP00000009383/1-1199 FKLVIAQVLL LDFCLAFLAD RVLQFFLGTP KLKVPS ENSP00000349877/1-1204 FKLVIAQVLL LDFCLALLAD RVLQFFLGTP KLKVPS bmy_02668T0/1-1235 FKLVIAQVLL LDFCLALLVD RVLQFFLGTP KLKVPS BACU016621/1-1141 FKLVIAQVLL LDFCLALLVD RVLQFFLGTP KLKVPS