KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:23 2014 Check: 00 .. Name: ENSP00000308541/1-622 Len: 650 Check: 3003 Weight: 1.00 Name: ENSBTAP00000009406/1-625 Len: 650 Check: 7248 Weight: 1.00 Name: ENSTTRP00000002629/1-623 Len: 650 Check: 8695 Weight: 1.00 Name: BACU018662/1-623 Len: 650 Check: 3018 Weight: 1.00 Name: bmy_04116T0/1-647 Len: 650 Check: 2111 Weight: 1.00 // 1 50 ENSP00000308541/1-622 MAHVRGLQLP GCLALAALCS LVHSQHVFLA PQQARSLLQR VRRANT-FLE ENSBTAP00000009406/1-625 MARVRGPRLP GCLALAALFS LVHSQHVFLA HQQASSLLQR ARRANKGFLE ENSTTRP00000002629/1-623 MAHVRGLWLP GCLALAALFS LVHSQHVFLA PQQALSLLQR VRRANSGFLE BACU018662/1-623 MAHVRGLWLP GCLALAALFS LVHSQYVFLA PQQALSLLQR VRRANSGFLE bmy_04116T0/1-647 MAHVRGLWLP GCLALAALFS LVHSQHVFLA PQQALSLLQR VRRANSGFLE 51 100 ENSP00000308541/1-622 EVRKGNLERE CVEETCSYEE AFEALESSTA TDVFWAKYTA CETARTPRDK ENSBTAP00000009406/1-625 EVRKGNLERE CLEEPCSREE AFEALESLSA TDAFWAKYTA CESARNPREK ENSTTRP00000002629/1-623 EWREGNLERE CVEEQCSREE AFEALESPSA TDVFWAKYTA CESLRKPREK BACU018662/1-623 EWREGNLERE CVEEQCSREE AFEALESPSA SDVFWAKYTA CESVRKPREK bmy_04116T0/1-647 EWREGNLERE CVEEQCSREE AFEALESPSA TGVS-GSFPA CESVRKPREK 101 150 ENSP00000308541/1-622 LAACLEGNCA EGLGTNYRGH VNITRSGIEC QLWRSRYPHK PEINSTTHPG ENSBTAP00000009406/1-625 LNECLEGNCA EGVGMNYRGN VSVTRSGIEC QLWRSRYPHK PEINSTTHPG ENSTTRP00000002629/1-623 LIECLEGNCA EGLGMNYRGN VSFTRSGIEC QLWRSRYPHK PEINSTTHPG BACU018662/1-623 LIECLEGNCA EGLGMNYRGN VSFTRSGIEC QLWRSRYPHK PEINSTTHPG bmy_04116T0/1-647 LIECLEGNCA EGLGMNYRGN VSFTRSGIEC QLWRSRYPHK PEINSTTHPG 151 200 ENSP00000308541/1-622 ADLQENFCRN PDSSTTGPWC YTTDPTVRRQ ECSIPVCGQD QVTVAMTPRS ENSBTAP00000009406/1-625 ADLRENFCRN PDGSITGPWC YTTSPTLRRE ECSVPVCGQD RVTVEVIPRS ENSTTRP00000002629/1-623 ADLQENFCRN PDGSITGPWC YTTLPTVQRE ECSIPVCGQE RVTVELTSNS BACU018662/1-623 ADLRENFCRN PDGSITGPWC YTTFPTVQRE ECSIPVCGQE RVTVELTPNS bmy_04116T0/1-647 ADLQENFCRN PDGSITGPWC YTTFPTVQRE ECSIPVCGQE RVTVELTPNS 201 250 ENSP00000308541/1-622 EGSSVNLSPP LEQCVPDRGQ QYQGRLAVTT HGLPCLAWAS AQAKALSKHQ ENSBTAP00000009406/1-625 GGSTTSQSPL LETCVPDRGR EYRGRLAVTT SGSRCLAWSS EQAKALSKDQ ENSTTRP00000002629/1-623 RDFAVNLSPQ SEMCIPDRGR QYQGHLAVTT HGSPCLAWAS ERAKALSKDQ BACU018662/1-623 GDFTVNLSPQ SEMCIPDRGQ QYQGHLAVTT HGSPCLAWAS ERAKALSKDQ bmy_04116T0/1-647 RDFTVNLSPQ SEMCIPDRGQ QYQGHLAVTT HGSPCLAWAS ERAKALSKDQ 251 300 ENSP00000308541/1-622 DFNSAVQLVE NFCRNPDGDE EGVWCYVAGK PGDFGYCDLN YCEEAVEEET ENSBTAP00000009406/1-625 DFNPAVPLAE NFCRNPDGDE EGAWCYVADQ PGDFEYCDLN YCEEPVDGDL ENSTTRP00000002629/1-623 DFSPAVPLVE NFCRNPDGDE EGAWCYVAGE PGDFEYCDLD YCEEPVDEEV BACU018662/1-623 DFNPAVPLVE NFCRNPDGDA EGAWCYVAGE PGDFEYCDLD YCEEPVDEEV bmy_04116T0/1-647 DFNPAVPLVE NFCRNPDGDE EGAWCYVAGE PGDFEYCDLD YCEEPVDEEV 301 350 ENSP00000308541/1-622 GDGLDE--DS DRAIEGRTAT SEYQTFFNPR TFGSGE---- ---------- ENSBTAP00000009406/1-625 GDRLGEDPDP DAAIEGRTSE DHFQPFFNEK TFGAGE---- ---------- ENSTTRP00000002629/1-623 GYGLGE--EP DAAIEGRTAA DTFLPFFDER TFGAGE---- ---------- BACU018662/1-623 GYGPGE--EP DVAIEGRTTA DKFQPFFNER TFGSGE---- ---------- bmy_04116T0/1-647 GYGLGE--EP DAAIEGRTAA DKFQPFFNER TFGAGEAGQA AAGGARGRVL 351 400 ENSP00000308541/1-622 ---------- -ADCGLRPLF EKKSLEDKTE RELLESYIDG RIVEGSDAEI ENSBTAP00000009406/1-625 ---------- -ADCGLRPLF EKKQVQDQTE KELFESYIEG RIVEGQDAEV ENSTTRP00000002629/1-623 ---------- -ADCGLRPLF ENKLVQDKTE QELFDSYIEG RIVEGRDAEI BACU018662/1-623 ---------- -ADCGLRPLF ENKLVQDKTE QELFDSYIEG RIVEGRDAEI bmy_04116T0/1-647 QRLAPHGPTG SADCGLRPLF ENKLVQDKTE QELFDSYIEG RIVDGRDAEI 401 450 ENSP00000308541/1-622 GMSPWQVMLF RKSPQELLCG ASLISDRWVL TAAHCLLYPP WDKNFTENDL ENSBTAP00000009406/1-625 GLSPWQVMLF RKSPQELLCG ASLISDRWVL TAAHCLLYPP WDKNFTVDDL ENSTTRP00000002629/1-623 GLAPWQVMLF RKSPQELLCG ASLISDRWIL TAAHCLLYPP WDKNFTENDL BACU018662/1-623 GLAPWQVMLF RKSPQELLCG ASLISDRWIL TAAHCLLYPP WDKNFTENDL bmy_04116T0/1-647 GLAPWQVMLF RKSPQELLCG ASLISDRWIL TAAHCLLYPP WDKNFTENDL 451 500 ENSP00000308541/1-622 LVRIGKHSRT RYERNIEKIS MLEKIYIHPR YNWRENLDRD IALMKLKKPV ENSBTAP00000009406/1-625 LVRIGKHSRT RYERKVEKIS MLDKIYIHPR YNWKENLDRD IALLKLKRPI ENSTTRP00000002629/1-623 LVRIGKHSRT SYERKIEKIS MLEKIHIHPR YNWRENLDRD IALLKLRKPI BACU018662/1-623 LVRIGKHSRT SYERKIEKIS MLEKIYIHPR YNWRENLDRD IALLKLKKPI bmy_04116T0/1-647 LVRIGKHSRT RYERKIEKIS MLEKIHIHPR YNWRENLDRD IALLKLKKPI 501 550 ENSP00000308541/1-622 AFSDYIHPVC LPDRETAASL LQAGYKGRVT GWGNLKETWT ANVGKGQPSV ENSBTAP00000009406/1-625 ELSDYIHPVC LPDKQTAAKL LHAGFKGRVT GWGNRRETWT TSVAEVQPSV ENSTTRP00000002629/1-623 SFTEYVHPVC LPDKDTATKL LRAGYKGRVT GWGNLRETWT ANIAEVQPSV BACU018662/1-623 SFTEYVHPVC LPDKETATKL LQAGYKGRVT GWGNLRETWT TNMAEVQPSV bmy_04116T0/1-647 SFTEYVHPVC LPDKETATKL LQAGYKGRVT GWGNLRETWT TSIAEVQPSM 551 600 ENSP00000308541/1-622 LQVVNLPIVE RPVCKDSTRI RITDNMFCAG YKPDEGKRGD ACEGDSGGPF ENSBTAP00000009406/1-625 LQVVNLPLVE RPVCKASTRI RITDNMFCAG YKPGEGKRGD ACEGDSGGPF ENSTTRP00000002629/1-623 LQVVNLPIVE RPVCKASTRI RITDNMFCAG YKPGEGKRGD ACEGDSGGPF BACU018662/1-623 LQVVNLPIVE RPVCKASTRI RITDNMFCAG YKPGEGKRGD ACEGDSGGPF bmy_04116T0/1-647 LQVVNLPIVE RPVCKASTRI RITDNMFCAG YKPGEGKRGD ACEGDSGGPF 601 650 ENSP00000308541/1-622 VMKSPFNNRW YQMGIVSWGE GCDRDGKYGF YTHVFRLKKW IQKVIDQFGE ENSBTAP00000009406/1-625 VMKSPYNNRW YQMGIVSWGE GCDRDGKYGF YTHVFRLKKW IQKVIDRLGS ENSTTRP00000002629/1-623 VMKSPFNNRW YQMGIVSWGE GCDRDGKYGF YTHVFRLKKW IQKVIERFGS BACU018662/1-623 VMKSPFNNRW YQMGIVSWGE GCDRDGKYGF YTHVFRLKKW IQKVTERFGS bmy_04116T0/1-647 VMKSPFNNRW YQMGIVSWGE GCDRDGKYGF YTHVFRLKKW IQKVTERFGS