KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:27 2014 Check: 00 .. Name: ENSP00000449241/1-1192 Len: 1371 Check: 9763 Weight: 1.00 Name: ENSBTAP00000009418/1-1188 Len: 1371 Check: 7090 Weight: 1.00 Name: ENSTTRP00000007902/1-1190 Len: 1371 Check: 2979 Weight: 1.00 Name: BACU008164/1-1007 Len: 1371 Check: 8028 Weight: 1.00 Name: bmy_03871T0/1-1018 Len: 1371 Check: 5872 Weight: 1.00 // 1 50 ENSP00000449241/1-1192 MSRGAGALQR RTTTYLISLT LVKLESVPPP PPSPSAAAAG AAGARGSETG ENSBTAP00000009418/1-1188 MSRGAGALQR RTTTYLISLT LVKLESVPPP PPSPSAAAAG APGTRGTETA ENSTTRP00000007902/1-1190 LIRSALALQR LTSTSLVP-T LVKLDSVSPP QHNSSAAAAG APGTRGTETR BACU008164/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_03871T0/1-1018 MSRGTGALQR RTTTYLISLT LVKLESVPPP PPSPSAAAAG APGTRGTETG 51 100 ENSP00000449241/1-1192 DPGSPRGAEE PGKKRHERLF HRQDALWIST SSAGTGGAEP PALSPAPASP ENSBTAP00000009418/1-1188 DPGSPRGAEE PGKKRHERLF HRQDALWIST SSAGAGGAEP LALSPAPASP ENSTTRP00000007902/1-1190 DHGSPRGAEE PGKKRHERLF HRQDALWIST SSAGAGGTEP PALSPAPASP BACU008164/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_03871T0/1-1018 DPGSPRGAEE PGKKRHERLF HRQDALWIST SSAGAGGAEP PALSPAPASP 101 150 ENSP00000449241/1-1192 ARPVSPAPGR RLSLWAVPPG PPLSGGLSPD PKPGGAPTSS RRPLLSSPSW ENSBTAP00000009418/1-1188 ARPVSPAPGR RLSLWAAPPG PSLSGGLSPD PKPGGAPTSS RRPLLSSPSW ENSTTRP00000007902/1-1190 ARPVSPAPGR RLSLWAAPPG PPLSGGLSPD PKPGGAPTSS RRPLLSSPSW BACU008164/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_03871T0/1-1018 ARPVSPAPGR RLSLWAAPPG PPLSGGLSPD PKPGGAPTSS RRPLLSSPSW 151 200 ENSP00000449241/1-1192 GGPEPEGRAG GGIPGSSSPH PGTGSRRLKV APPPPAPKPC KTVTTSGAKA ENSBTAP00000009418/1-1188 GGPEPEGRAG VGVPGSSSPH PGTGSRRLKV APPPPAPKPC KTVTTSGAKA ENSTTRP00000007902/1-1190 GGPEPEGRAG GGVPGSSSPH PGTGSRRLKV APPPPAPKPC KTVTTSGAKA BACU008164/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_03871T0/1-1018 GGPEPEGRAG GGVPGSSSPH PGTGSRRLKV APPPPAPKPC KTVTTSGAKA 201 250 ENSP00000449241/1-1192 GGGKGAGSRL SWPESEGKPR VKGSKSSAGT GASVSAAATA -AAAGGGGST ENSBTAP00000009418/1-1188 GGGKGAGSRL SWPESEGKPR VKGSKSSAGT GVSAAA---- -GAAGGGGAA ENSTTRP00000007902/1-1190 GGGKGTGSRL SWPESEGKPR VKGSKSSTGT GASAAAAAVT -AAAGGGGAA BACU008164/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_03871T0/1-1018 GGGKGAGSRL SWPESEGKPR VKGSKSSTGT GASAAAAAVT AAAAGGGGAA 251 300 ENSP00000449241/1-1192 ASTSGGVGAG AGARGKLSPR KGKSKTLDNS DLHPGPPAGS PPPLTLPPTP ENSBTAP00000009418/1-1188 ATTSGGVGAG PGVRGKLSPR KGKSKTLDNS DLHPGPPAGS PPPLTVPATL ENSTTRP00000007902/1-1190 ATTAGGVGAG PGARGKLSPR KGKSKTLDNS DLHPGPPAGS PPPLTVPATL BACU008164/1-1007 ---------- ---------- ---------- ---------- ---------- bmy_03871T0/1-1018 ATTAGGVGAG PGARGKLSPR KGKSKTLDNS DLHPGPPAGS PPPLTVPATL 301 350 ENSP00000449241/1-1192 SPATAVTAAS AQPPGPAPPI TLEPPAPGLK RGREGGRAST RDRKMLKFIS ENSBTAP00000009418/1-1188 TPTSAVTAAS ALPTGPAPPI TLEPPAPGLK RGREGGRAST RDRKMLKFIS ENSTTRP00000007902/1-1190 APAAAVTAAS ALPTGPAPPI TLEPPAPGLK RGREGGRAST RDRKMLKFIS BACU008164/1-1007 ---------- ---------- ---------- ---------- ----MLKFIS bmy_03871T0/1-1018 APAAAVTAAS ALPTGPAPPI TLEPPAPGLK RGREGGRAST RDRKMLKFIS 351 400 ENSP00000449241/1-1192 GIFTKSTGGP PGSGPLPGPP SLSSGSGSRE LLGAELRASP KAVINSQEWT ENSBTAP00000009418/1-1188 GIFTKSTGGP PGPGPPPGPP VLSSGSGSRE LLGAELRASP KAVINSQEWT ENSTTRP00000007902/1-1190 GIFTKSTGGP PGSGPPPGPP VLSSGSGSRE LLGAELRASP KAVVNSQEWT BACU008164/1-1007 GIFTKSTGGP PGSGPPPGPP VLSSGSGSRE LLGAELRASP KAVVNSQEWT bmy_03871T0/1-1018 GIFTKSTGGP PGSGPPPGPP VLSSGSGSRE LLGAELRASP KAVVNSQEWT 401 450 ENSP00000449241/1-1192 LSRSIPELRL GVLGDARSGK SSLIHRFLTG SYQVLEKTES EQYKKEMLVD ENSBTAP00000009418/1-1188 LSRSIPELRL GVLGDARSGK SSLIHRFLTG SYQVLEKTES EQHKKEMLVD ENSTTRP00000007902/1-1190 LSRSIPELRL GVLGDARSGK SSLIHRFLTG SYHVLEKTES EQHKKEMLVD BACU008164/1-1007 LSRSIPELRL GVLGDARSGK SSLIHRFLTG SYQVLEKTES EQHKKEMLVD bmy_03871T0/1-1018 LSRSIPELRL GVLGDARSGK SSLIHRFLTG SYQVLEKTES EQHKKEMLVD 451 500 ENSP00000449241/1-1192 GQTHLVLIRE EAGAPDAKFS GWADAVIFVF SLEDENSFQA VSRLHGQLSS ENSBTAP00000009418/1-1188 GQTHLVLIRE EAGAPDAKFS GWADAVIFVF SLEDENSFQA VSRLHGQLSS ENSTTRP00000007902/1-1190 GQTHLVLIRE EAGAPDTKFS GWADAVIFVF SLEDENSFQA VSRLHGQLNS BACU008164/1-1007 GQTHLVLIRE EAGAPDTKFS GWADAVIFVF SLEDENSFQA VSRLHGQLSS bmy_03871T0/1-1018 GQTHLVLIRE EAGAPDTKFS GWADAVIFVF SLEDENSFQA VSRLHGQLSS 501 550 ENSP00000449241/1-1192 LRGEGRGGLA LALVGTQDRI SASSPRVVGD ARARALCADM KRCSYYETCA ENSBTAP00000009418/1-1188 LRGEGRGGLA LALVGTQDRI SASSPRVVGD ARARALCADM KRCSYYETCA ENSTTRP00000007902/1-1190 LRGEGRGGLA LALVGTQDRI SASSPRVVGD ARARALCADM KRCSYYETCA BACU008164/1-1007 LRGEGRGGLA LALVGTQDRI SASSPRVVGD ARARALCADM KRCSYYETCA bmy_03871T0/1-1018 LRGEGRGGLA LALVGTQDRI SASSPRVVGD ARARALCADM KRCSYYETCA 551 600 ENSP00000449241/1-1192 TYGLNVDRVF QEVAQKVVTL RKQQQLLAAC KSLPSSPSHS AASTPVAGQA ENSBTAP00000009418/1-1188 TYGLNVDRVF QEVAQKVVTL RKQQQLLAAC KSLPSSPSHS AASTPVAGQA ENSTTRP00000007902/1-1190 TYGLNVDRVF QEVAQKVVTL RKQQQLLAAC KSLPSSPSHS AASTPVAGQA BACU008164/1-1007 TYGLNVDRVF QEVAQKVVTL RKQQQLLAAC KSLPSSPSHS AASTPVAGQA bmy_03871T0/1-1018 TYGLNVDRVF QEVAQKVVTL RKQQQLLAAC KSLPSSPSHS AASTPVAGQA 601 650 ENSP00000449241/1-1192 SNGGHTSDYS SSLPSSPNVG HRELRAEAAA VAGLSTPGSL HRAAKRRTSL ENSBTAP00000009418/1-1188 GNGGHTSDYS SSLPSSPNVG HRELRAEAAA VAGLSTPGSL HRAAKRRTSL ENSTTRP00000007902/1-1190 SNGGHTSDYS SSLPSSPNVG HRELRAEAAA VAGLSTPGSL HRAAKRRTSL BACU008164/1-1007 SNGGHTSDYS SSLPSSPNVG HRELRAEAAA VAGLSTPGSL HRAAKRRTSL bmy_03871T0/1-1018 SNGGHTSDYS SSLPSSPNVG HRELRAEAAA VAGLSTPGSL HRAAKRRTSL 651 700 ENSP00000449241/1-1192 FANRRGSDSE KRSLDSRGET TGSGRAIPIK QSFLLKRSGN SLNKEWKKKY ENSBTAP00000009418/1-1188 FANRRGSDSE KRSLDSRGET TGSGRAIPIK QSFLLKRSGN SLNKEWKKKY ENSTTRP00000007902/1-1190 FANRRGSDSE KRSLDSRGET TGSGRAIPIK QSFLLKRSGN SLNKEWKKKY BACU008164/1-1007 FANRRGSDSE KRSLDSRGET TGSGRAIPIK QSFLLKRSGN SLNKEWKKKY bmy_03871T0/1-1018 FANRRGSDSE KRSLDSRGET TGSGRAIPIK QSFLLKRSGN SLNKEWKKKY 701 750 ENSP00000449241/1-1192 VTLSSNGFLL YHPSINDYIH STHGKEMDLL RTTVKVPGKR PPRAISAFGP ENSBTAP00000009418/1-1188 VTLSSNGFLL YHPSINDYIH STHGKEMDLL RTTVKVPGKR PPRAISAFGP ENSTTRP00000007902/1-1190 VTLSSNGFLL YHPSINDYIH STHGKEMDLL RTTVKVPGKR PPRAISAFGP BACU008164/1-1007 VTLSSNGFLL YHPSINDYIH STHGKEMDLL RTTVKVPGKR PPRAISAFGP bmy_03871T0/1-1018 VTLSSNGFLL YHPSINDYIH STHGKEMDLL RTTVKVPGKR PPRAISAFGP 751 800 ENSP00000449241/1-1192 SASINGLVKD MSTVQMGEGL EATTPMPSPS PSPSSLQPPP DQTSKHLLKP ENSBTAP00000009418/1-1188 SASINGLVKD MSTVQMGEGP EATTPTPSPS PSPSSLQPPP DQTSKHLLKP ENSTTRP00000007902/1-1190 SASINGLVKD MSTVQMGEGP EATTPTPSPS PSPSSLQPPP DQTSKHLLKP BACU008164/1-1007 SASINGLVKD MSTVQMGEGP EATTPTPSPS PSPSSLQPPP DQTSKHLLKP bmy_03871T0/1-1018 SASINGLVKD MSTVQMGEGP EATTPTPSPS PSPSSLQPPP DQTSKHLLKP 801 850 ENSP00000449241/1-1192 DRNLARALST DCTPSGDLSP LSREPPPSPM VKKQRRKKLT TPSKTEGSAG ENSBTAP00000009418/1-1188 DRSLARALST DCTPSGDLSP LSREPPPSPM VKKQRRKKLT TPSKTEGSAG ENSTTRP00000007902/1-1190 DRNLARALST DCTPSGDLSP LSREPPPSPM VKKQRRKKLT TPSKTEGSAG BACU008164/1-1007 DRNLARALST DCTPSGDLSP LSREPPPSPM VKKQRRKKLT TPSKTEGSAG bmy_03871T0/1-1018 DRNLARALST DCTPSGDLSP LSREPPPSPM VKKQRRKKLT TPSKTEGSAG 851 900 ENSP00000449241/1-1192 QAEAKRKMWK LKSFGSLRNI YKAEENFEFL IVSSTGQTWH FEAASFEERD ENSBTAP00000009418/1-1188 QAEAKRKMWK LKSFGSLRNI YKAEENFEFL IVSSTGQTWH FEAASFEERD ENSTTRP00000007902/1-1190 QAEAKRKMWK LKSFGSLRNI YKAEENFEFL IVSSTDQTWH FEAASFEERD BACU008164/1-1007 QAE------- ---------- ---EENFEFL IVSSTGQTWH FEAASFEERD bmy_03871T0/1-1018 QAE------- ---------- ---EENFEFL IVSSTGQTWH FEAASFEERD 901 950 ENSP00000449241/1-1192 AWVQAIESQI LASLQCCESS KVKLRTDSQS EAVAIQAIRN AKGNSICVDC ENSBTAP00000009418/1-1188 AWVQAIESQI LASLQCCESS KVKLRTDSQS EAVAIQAIRN AKGNSICVDC ENSTTRP00000007902/1-1190 AWVQAIESQI LASLQCCEST RVQXXTDSQS EAV-IQAIRN AKGNSICVDC BACU008164/1-1007 AWVQAIESQI LASLQCCESS KVKLRTDSQS EAVAIQAIRN AKGNSICVDC bmy_03871T0/1-1018 AWVQAIESQI LASLQCCESS KVKLRTDSQS EAVAIQAIRN AKGNSICVDC 951 1000 ENSP00000449241/1-1192 GAPNPTWASL NLGALICIEC SGIHRNLGTH LSRVRSLDLD DWPRELTLVL ENSBTAP00000009418/1-1188 GAPNPTWASL NLGALICIEC SGIHRNLGTH LSRVRSLDLD DWPRELTLVL ENSTTRP00000007902/1-1190 GAPNPTWASL NLGALICIEC SGIHRNLGTH LSRVRSLDLD DWPRELTLVL BACU008164/1-1007 GAPNPTWASL NLGALICIEC SGIHRNLGTH LSRVRSLDLD DWPRELTLVL bmy_03871T0/1-1018 GAPNPTWASL NLGALICIEC SGIHRNLGTH LSRVRSLDLD DWPRELTLVL 1001 1050 ENSP00000449241/1-1192 TAIGNDTANR VWESDTRGRA KPSRDSSREE RESWIRAKYE QLLFLAPLST ENSBTAP00000009418/1-1188 TAIGNDMANR VWESDTRGRV KPTRDSSREE RESWIRAKYE QLLFLAPLGT ENSTTRP00000007902/1-1190 TAIGNDMANR VWESDTRGRA KPTRDSSREE RESWIRAKYE QLLFLAPLGT BACU008164/1-1007 TAIGNDMANR VWESDTRGRA KPTRDSSREE RESWIRAKYE QLLFLAPLGT bmy_03871T0/1-1018 TAIGNDMANC VWESDTRGRA KPTRDSSR-- ---------- ---------- 1051 1100 ENSP00000449241/1-1192 SEEPLGRQLW AAVQAQDVAT VLLLLAHARH GPLDTSVEDP QLRSPLHLAA ENSBTAP00000009418/1-1188 SEEPLGRQLW AAVQAQDVAA VLLLLAHARH GPLDTSVEDP QLRSPLHLAA ENSTTRP00000007902/1-1190 SEEPLGCQLW AAVQAQDVAA VLLLLAHARH GPLDTSPEDP QLRSPLHLAA BACU008164/1-1007 SEEPLGCQLW AAVQAQDVAA VLLLLAHARH GPLDTSPEDP QLRSPLHLAA bmy_03871T0/1-1018 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000449241/1-1192 ELAHVVITQL LLWYGADVAA RDAQGRTALF YARQAGSQLC ADILLQHGCP ENSBTAP00000009418/1-1188 ELSHVVITQL LLWYGADVSA RDAQGRTALF YARQAGSQLC ADVLLQHGCP ENSTTRP00000007902/1-1190 ELAHVVITQL LLWYGADVSA RDAQGRTALF YARQAGSQLC ADILLQHGCP BACU008164/1-1007 ELAHVVITQL LLWYGADVSA RDAQGRTALF YARQAGSQLC ADILLQHGCP bmy_03871T0/1-1018 ---------- ---------- ---------- ---------- ------YACR 1151 1200 ENSP00000449241/1-1192 GEGGSAATTP SAATTPSITA TPSPRRRSSA ASVGRADAPV ALV------- ENSBTAP00000009418/1-1188 CEGGSTATTP SAATTPSITA TPSPRRRSSA ASVGRADAPV ALV------- ENSTTRP00000007902/1-1190 GEGGSTATTP SAATTPSITA TPSPRRRSSA ASVGRADAPV ALV------- BACU008164/1-1007 GEGGSTATTP SAATTPSITA TPSPRRRSSA ASVGRADVPV ALVYVXXXXX bmy_03871T0/1-1018 RGVGET---- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000449241/1-1192 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009418/1-1188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007902/1-1190 ---------- ---------- ---------- ---------- ---------- BACU008164/1-1007 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03871T0/1-1018 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000449241/1-1192 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009418/1-1188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007902/1-1190 ---------- ---------- ---------- ---------- ---------- BACU008164/1-1007 XXXXXXXXXX XXXPPPQEGT APTPPRRHKL TSLSPARHGD PILTRPLSTV bmy_03871T0/1-1018 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000449241/1-1192 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009418/1-1188 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007902/1-1190 ---------- ---------- ---------- ---------- ---------- BACU008164/1-1007 CTLGLLWVYP LGVCGRGRPR RGPCSWPFGC ARSRPLGVGE KTQSCLCSTV bmy_03871T0/1-1018 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000449241/1-1192 ---------- ---------- - ENSBTAP00000009418/1-1188 ---------- ---------- - ENSTTRP00000007902/1-1190 ---------- ---------- - BACU008164/1-1007 PQRASTYPGW LLGRRHATGR G bmy_03871T0/1-1018 ---------- ---------- -