KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:28 2014 Check: 00 .. Name: ENSTTRP00000010371/1-692 Len: 984 Check: 7657 Weight: 1.00 Name: BACU009129/1-782 Len: 984 Check: 8047 Weight: 1.00 Name: ENSP00000339824/1-808 Len: 984 Check: 145 Weight: 1.00 Name: bmy_05471T0/1-837 Len: 984 Check: 9484 Weight: 1.00 Name: ENSBTAP00000009427/1-801 Len: 984 Check: 1434 Weight: 1.00 // 1 50 ENSTTRP00000010371/1-692 ---------- ---------- ---------- ---------- ---------- BACU009129/1-782 ---------- ---------- ---------- -------MRC RSAGC----- ENSP00000339824/1-808 ---------- ---------- ---------- ----MGAPAC ALALCVAVA- bmy_05471T0/1-837 QTPEWRPPAG ARTGPWGAAC WRAPPEDVVT PAPAMGAPAC ALAFFVAVAV ENSBTAP00000009427/1-801 ---------- ---------- ---------- ----MGAPAR ALAFCVAVA- 51 100 ENSTTRP00000010371/1-692 ---------- ---------- -----VPGPE PGQQE-LVFG SGDIVELSCH BACU009129/1-782 ----GAPGAP GLGSAASWAP ILPAEVPGPE PGQQE-LVFG SGDTVELSCH ENSP00000339824/1-808 IVAGASSESL GTEQRVVGR- --AAEVPGPE PGQQEQLVFG SGDAVELSCP bmy_05471T0/1-837 VMTGAVSGSP GMEQRVVRR- --AAEVPGPE PGQQE-LVFG SGDTVELSCH ENSBTAP00000009427/1-801 VMTGAALGSP GVEPRVARR- --AAEVPGPE PSPQE-RAFG SGDTVELSCR 101 150 ENSTTRP00000010371/1-692 WPAGAPSGPT VWVKDGVGLA PSDRILVGPQ RLQVLNASHE DAGAYSCRQR BACU009129/1-782 LPAGAPSGPT VWVKDGVALA PSDRILVGPQ RLQVLNASHE DAGAYSCRQR ENSP00000339824/1-808 PPGGGPMGPT VWVKDGTGLV PSERVLVGPQ RLQVLNASHE DSGAYSCRQR bmy_05471T0/1-837 LPAGAPSGPT VWVKDGVALA PSDRILVGPQ RLQVLNASHE DAGAYSCRQR ENSBTAP00000009427/1-801 LPAGVPTEPT VWVKDGVGLA PSDRVLVGPQ RLQVLNASHE DAGAYSCRQR 151 200 ENSTTRP00000010371/1-692 LTQSVLCHFT VRVTDAPSSG DDEDGEDEAE DT----GEXX XXXXXXXXXX BACU009129/1-782 LSQSVLCRFT VRVPDAPSSG DDEDGEDEAE DT----GAPY -WTRPERMDK ENSP00000339824/1-808 LTQRVLCHFS VRVTDAPSSG DDEDGEDEAE DTGVDTGAPY -WTRPERMDK bmy_05471T0/1-837 LSQSVLCHFT VRVTDAPSSG DDEDGEDEAE DT---AGAPY -WTRPERMDK ENSBTAP00000009427/1-801 LSQRLLCLFS VRVTDAPSSG DDEGGDDEAE DT---AGAPY -WTRPERMDK 201 250 ENSTTRP00000010371/1-692 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009129/1-782 KLLAVPAANT VRFRCPAAGN PTPSISWLKN GKEFRGEHRI GGIK------ ENSP00000339824/1-808 KLLAVPAANT VRFRCPAAGN PTPSISWLKN GREFRGEHRI GGIKLRHQQW bmy_05471T0/1-837 KLLAVPAANT VRFRCPAAGN PTPSISWLKN GKEFRGEHRI GGIKLRHQQW ENSBTAP00000009427/1-801 KLLAVPAANT VRFRCPAAGN PTPSITWLKN GKEFRGEHRI GGIKLRQQQW 251 300 ENSTTRP00000010371/1-692 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009129/1-782 ---------- ---------- ---------- ---------- ---------- ENSP00000339824/1-808 SLVMESVVPS DRGNYTCVVE NKFGSIRQTY TLDVLERSPH RPILQAGLPA bmy_05471T0/1-837 SLVMESVVPS DRGNYTCVVE NKFGSIRQTY TLDVLERSPH RPILQAGLPA ENSBTAP00000009427/1-801 SLVMESVVPS DRGNYTCVVE NKFGRIQQTY TLDVLERSPH RPILQAGLPA 301 350 ENSTTRP00000010371/1-692 XXXXXXXXXX XXXXXXXXXX XXXXXXXKHV EVNGSKVGP- GTPYVTVLKT BACU009129/1-782 --TAVLGSDV EFHCKVYSDA QPHIQWLKHV EVNGSKVGPD GTPYVTVLKS ENSP00000339824/1-808 NQTAVLGSDV EFHCKVYSDA QPHIQWLKHV EVNGSKVGPD GTPYVTVLKS bmy_05471T0/1-837 NQTAVLGSDV EFHCKVYSDA QPHIQWLKHV EVNGSKVGPD GTPYVTVLKT ENSBTAP00000009427/1-801 NQTAVLGSDV EFHCKVYSDA QPHIQWLKHV EVNGSKVGPD GTPYVTVLKT 351 400 ENSTTRP00000010371/1-692 A--------- ---------- ---------- ---------- ---------- BACU009129/1-782 WISESAEADV RLRLANVSER DGGEYLCRAS NFIGVAEKAF WLRVRGPQAG ENSP00000339824/1-808 W--------- ---------- ---------- ---------- ---------- bmy_05471T0/1-837 A--------- ---------- ---------- ---------- ---------- ENSBTAP00000009427/1-801 A--------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000010371/1-692 ---------- ---------- ---------- ---------- -----GANTT BACU009129/1-782 TGFGLGVDAR GRGPSAAVAV AVVAVAAFSL QPGWIVVAWT LAVTAGANTT ENSP00000339824/1-808 ---------- ---------- ---------- ---------- -----ISESV bmy_05471T0/1-837 ---------- ---------- ---------- ---------- -----GANTT ENSBTAP00000009427/1-801 ---------- ---------- ---------- ---------- -----GANTT 451 500 ENSTTRP00000010371/1-692 DKELEVLSLR NVTFEDAGEY TCLAGNSIGF SHHSAWLVVL PX-------- BACU009129/1-782 DKELEVLSLR NVTFEDAGEY TCLAGNSIGF SHHSAWLVVL PEGLPRVPHP ENSP00000339824/1-808 EADVR-LRLA NVSERDGGEY LCRATNFIGV AEKAFWLSVH GPR------- bmy_05471T0/1-837 DKELEVLSLR NVTFEDAGEY TCLAGNSIGF SHHSAWLVVL P--------- ENSBTAP00000009427/1-801 DKELEVLSLR NVTFEDAGEY TCLAGNSIGF SHHSAWLVVL P--------- 501 550 ENSTTRP00000010371/1-692 ---------- -------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009129/1-782 NGVPSSRYGG FGVSRVAAEE ELVEAGEAGS VYAGVLSYGV GFLLFILVVA ENSP00000339824/1-808 ---------- ------AAEE ELVEADEAGS VYAGILSYGV GFFLFILVVA bmy_05471T0/1-837 ---------- -------AEE ELVEAGEAGS VYAGVLSYGV GFLLFILVVA ENSBTAP00000009427/1-801 ---------- -------AEE ELVEAGEAGG VFAGVLSYGL GFLLFILAVA 551 600 ENSTTRP00000010371/1-692 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX QVSLESSSSM SSNTPLVRIA BACU009129/1-782 AVTLCRLRSP PKKGLGSPAV HKVSRFPLKR QVSLESSSSM SSNTPLVRIA ENSP00000339824/1-808 AVTLCRLRSP PKKGLGSPTV HKISRFPLKR QVSLESNASM SSNTPLVRIA bmy_05471T0/1-837 AVTLCRLRSP PKKGLGSPTV HKVSRFPLKR QVSLESSSSM SSNTPLVRIA ENSBTAP00000009427/1-801 AVTLYRLRSP PKKGLGSPAV HKVSRFPLKR QVSLESSSSM SSNTPLVRIA 601 650 ENSTTRP00000010371/1-692 RLSSGEGPAL ANVSELELPA D--------- ---------- PKWELSRARL BACU009129/1-782 RLSSGEGPAL ANVSELGGAA GKTHPWKSAL TGPEAGGQGP PPARAGSPGL ENSP00000339824/1-808 RLSSGEGPTL ANVSELELPA D--------- ---------- PKWELSRARL bmy_05471T0/1-837 RLSSGEGPAL ANVSELELPA D--------- ---------- PKWELSRARL ENSBTAP00000009427/1-801 RLSSGEGPTL ANVSELELPA D--------- ---------- PKWELSRARL 651 700 ENSTTRP00000010371/1-692 TLGKPLGEGC FGQVVMAEAI GIDKDRAAKP VTVAVKMLKD DATDKDLSDL BACU009129/1-782 TLGKPLGEGC FGQVVMAEAI GIDKDRAAKP VTVAVKMLKD DATDKDLSDL ENSP00000339824/1-808 TLGKPLGEGC FGQVVMAEAI GIDKDRAAKP VTVAVKMLKD DATDKDLSDL bmy_05471T0/1-837 TLGKPLGEGC FGQVVMAEAI GIDKDRAAKP VTVAVKMLKD DATDKDLSDL ENSBTAP00000009427/1-801 TLGKPLGEGC FGQVVMAEAI GIDKDRAAKP VTVAVKMLKD DATDKDLSDL 701 750 ENSTTRP00000010371/1-692 VSEMEMMKMI GKHKNIINLL GACTQGGPLY VLVEYAAKGN LREYLRARRP BACU009129/1-782 VSEMEMMKMI GKHKNIINLL GACTQGGPLY VLVEYAAKGN LREYLRARRP ENSP00000339824/1-808 VSEMEMMKMI GKHKNIINLL GACTQGGPLY VLVEYAAKGN LREFLRARRP bmy_05471T0/1-837 VSEMEMMKMI GKHKNIINLL GACTQGGPLY VLVEYAAKGN LREYLRARRP ENSBTAP00000009427/1-801 VSEMEMMKMI GKHKNIINLL GACTQGGPLY VLVEYAAKGN LREYLRARRP 751 800 ENSTTRP00000010371/1-692 PGTDYSFDTC RLPEEQLTFK DLVSCAYQVA RGMEYLASQK CIHRDLAARN BACU009129/1-782 PGTDYSFDTC RLPEEQLTFK DLVSCAYQVA RGMEYLASQK RMSKKFQV-- ENSP00000339824/1-808 PGLDYSFDTC KPPEEQLTFK DLVSCAYQVA RGMEYLASQK CIHRDLAARN bmy_05471T0/1-837 PGTDYSFDTC RLPEEQLTFK DLVSCAYQVA RGMEYLASQK CIHRDLAARN ENSBTAP00000009427/1-801 PGTDYSFDTC RLPEEQLTFK DLVSCAYQVA RGMEYLASQK CIHRDLAARN 801 850 ENSTTRP00000010371/1-692 VLVTEDNVMK IADFGLARDV HNLDYYKKTT NLVLRCPALG ---------- BACU009129/1-782 ---------- ---------T WKLSFCRRPP SAHLAT--LG PR-------- ENSP00000339824/1-808 VLVTEDNVMK IADFGLARDV HNLDYYKKTT NGRLPVKWMA PEALFDRVYT bmy_05471T0/1-837 VLVTEDNVMK IADFGLARDV HNLDYYKKTT NGRLPVKWMA PEALFDRVYT ENSBTAP00000009427/1-801 VLVTEDNVMK IADFGLARDV HNLDYYKKTT NGRLPVKWMA PEALFDRVYT 851 900 ENSTTRP00000010371/1-692 ---DLHAGGL ---------- ----AVPRHP RGGALQA--- ---------- BACU009129/1-782 -------LPI PMF------- ----VVPQRT FLPYLTQPSQ -EQPD----- ENSP00000339824/1-808 HQSDVWSFGV LLWEIFTLGG SPYPGIPVEE LFKLLKEGHR MDKPANCTHD bmy_05471T0/1-837 HQSDVWSFGV LLWEIFTLGG SPYPGIPVEE LFKLLKEGHR MDKPANCTHD ENSBTAP00000009427/1-801 HQSDVYVAPE LVW-IWGWWG NPCPGVPAHG QGPALXEGHR MDKPANCTHD 901 950 ENSTTRP00000010371/1-692 --------AE GRPPHGQAGQ LHARSVHDHA VLARR----- -ALPEAHLQA BACU009129/1-782 -----RAGAA GRPPATPTAP PWSTSLPEL- ---------- ---PVVDPSP ENSP00000339824/1-808 LYMIMRECWH AAPSQRPTFK QLVEDLDRVL TVTSTDEYLD LSAPFEQYSP bmy_05471T0/1-837 LYMIMRECWH AVPSQRPTFK QLVEDLDRVL TVTSTDEYLD LSVPFEQYSP ENSBTAP00000009427/1-801 LYMIMRECWH AAPSQRPTFK QLVEDLDRVL TVTSTDEYLD LSVPFEQYSP 951 1000 ENSTTRP00000010371/1-692 AGGR------ ---------- ---PGPRAYR YIHR BACU009129/1-782 DVQRNP---- ---------- LRTP----TG AVRR ENSP00000339824/1-808 GGQDTPSSSS SGDDSVFAHD LLPPAPPSSG GSRT bmy_05471T0/1-837 GGQDTPSSGS SGDDSVFAHD LLPPAPPGSG GSRT ENSBTAP00000009427/1-801 GGQDTPSSGS SGDDSVFAHD LLPPAPSGSG GSRT