KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:28 2014 Check: 00 .. Name: bmy_00209T0/1-505 Len: 615 Check: 8571 Weight: 1.00 Name: ENSTTRP00000005533/1-534 Len: 615 Check: 8321 Weight: 1.00 Name: ENSBTAP00000009431/1-505 Len: 615 Check: 4144 Weight: 1.00 Name: ENSP00000158166/1-520 Len: 615 Check: 4471 Weight: 1.00 Name: BACU006951/1-564 Len: 615 Check: 9188 Weight: 1.00 // 1 50 bmy_00209T0/1-505 --MLATQAEG TG-------- ---------- ---------- QVPNKAAQRN ENSTTRP00000005533/1-534 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009431/1-505 ---------- ---------- ---------- ---------- ---------- ENSP00000158166/1-520 ---------- ---------- ---------- ---------- ---------- BACU006951/1-564 MSELPSSSKG EGGVFWQKAQ LGQRPGSRTE SAVWDLQPEW RVPNKAAQRN 51 100 bmy_00209T0/1-505 PLTVAMEGGP AVCCQDPRAE LVERVAAMDV AHLEETDGSP EPTRNCVDPP ENSTTRP00000005533/1-534 -----MEGGP AVCCQDPRAE LVERVAAMDV AHLEETDGSP EPTRNCVDPS ENSBTAP00000009431/1-505 -----MEGGP AVCCQDPRAE LVERVAAIDV THLEETDGSP EPPRNCVDPP ENSP00000158166/1-520 -----MEGGP AVCCQDPRAE LVERVAAIDV THLEEADGGP EPTRNGVDPP BACU006951/1-564 PLTVAMEGGP AVCCQDPRAE LVERVAAMDV AHLEETDGSP EPTRNCVDPP 101 150 bmy_00209T0/1-505 SRARAASVIP GGTSRCPAAR PSLSARKFSL QERPVGSCLE AQAGPYATGP ENSTTRP00000005533/1-534 PRARAASVIP GGTSRCPAAR PSLSARKFSL QERPAGSCLE AQAAPYATGP ENSBTAP00000009431/1-505 SRTRAASLIP SGPSRHPAVR PSLSTRKFSL QERPAGSCLE AQAGPYATGP ENSP00000158166/1-520 PRARAASVIP GSTSRLLPAR PSLSARKLSL QERPAGSYLE AQAGPYATGP BACU006951/1-564 SRARAASVIP GGTSRCPAAR PSLSARKFSL QERPAGSCLE AQAGPYATGP 151 200 bmy_00209T0/1-505 ASHISPRVWR RPTIESHHVA ISDAEDCVQL NQYKLQSEIG KGAYGVVRLA ENSTTRP00000005533/1-534 ASHISPRAWR RPTIESHHVA ISDAEDCVQL NQYKLQSEIG KGAYGVVRLA ENSBTAP00000009431/1-505 ASHISPRAWR RPTIESHHVA ISDAEDCIQL NQYKLQSEIG KGAYGVVRLA ENSP00000158166/1-520 ASHISPRAWR RPTIESHHVA ISDAEDCVQL NQYKLQSEIG KGAYGVVRLA BACU006951/1-564 TSHISPRAWR RPTIESHHVA ISDAEDCVQL NQYKLQSEIG KGAYGVVRLA 201 250 bmy_00209T0/1-505 YNESEDRHYA MKVLSKKKLL KQYGFPRRPP PRGSQAAQGG PAKQLLPLER ENSTTRP00000005533/1-534 YNESEDRHYA MKVLSKKKLL KQYGFPRRPP PRGSQAAQAG PAKQLLPLER ENSBTAP00000009431/1-505 YNESEDRHYA MKVLSKKKLL KQYGFPRRPP PRGSQAAQGG PAKQLLPLER ENSP00000158166/1-520 YNESEDRHYA MKVLSKKKLL KQYGFPRRPP PRGSQAAQGG PAKQLLPLER BACU006951/1-564 YNESEDRHYA MKVLSKKKLL KQYGFPRRPP PRGSQAAQGG PAKQLLPLER 251 300 bmy_00209T0/1-505 VYQEIAILKK LDHVNVVKLI EVLDDPAEDN LYL------- ---------- ENSTTRP00000005533/1-534 VYQEIAILKK LDHVNVVKLI EVLDDPAEDN LYLALLSQAQ NIQLDSTTIP ENSBTAP00000009431/1-505 VYQEIAILKK LDHVNVVKLI EVLDDPAEDN LYL------- ---------- ENSP00000158166/1-520 VYQEIAILKK LDHVNVVKLI EVLDDPAEDN LYLALQNQAQ NIQLDSTNIA BACU006951/1-564 VYQEIAILKK LDHVNVVKLI EVLDDPAEDN LYL------- ---------- 301 350 bmy_00209T0/1-505 ---------- ---------- -VFDLLRKGP VMEVPCDKPF PEEQARLYLR ENSTTRP00000005533/1-534 KPHSTDRRD- --------GR SVFDLLRKGP VMEVPCDKPF PEEQARLYLR ENSBTAP00000009431/1-505 ---------- ---------- -VFDLLRKGP VMEVPCDKPF PEEQARLYLR ENSP00000158166/1-520 KPHSLLPSEQ QDSGSTWAAR SVFDLLRKGP VMEVPCDKPF SEEQARLYLR BACU006951/1-564 ---------- ---------- -VFDLLRKGP VMEVPCDKPF PEEQARLYLR 351 400 bmy_00209T0/1-505 DIILGLEYLH YQKIIHRDIK PSNLLLGDDG HVKIADFGVS NQFEGNDARL ENSTTRP00000005533/1-534 DIILGLEYLH YQKIIHRDIK PSNLLLGDDG HVKIADFGVS NQFEGNDARL ENSBTAP00000009431/1-505 DIILGLEYLH YQKIIHRDIK PSNLLLGDDG HVKIADFGVS NQFEGNDARL ENSP00000158166/1-520 DVILGLEYLH CQKIVHRDIK PSNLLLGDDG HVKIADFGVS NQFEGNDAQL BACU006951/1-564 DIILGLEYLH YQKIIHRDIK PSNLLLGDDG HVKIADFGVS NQFEGNDARL 401 450 bmy_00209T0/1-505 SSTAGTPAFM APEAISESGQ SFSGKALDVW ATGVTLYCFV YGKVSAGWAG ENSTTRP00000005533/1-534 SSTAGTPAFM APEAISESGQ SFSGKALDVW ATGITLYCFV YGKCPF---- ENSBTAP00000009431/1-505 SSTAGTPAFM APEAISDSGQ SFSGKALDVW ATGVTLYCFV YGKCPF---- ENSP00000158166/1-520 SSTAGTPAFM APEAISDSGQ SFSGKALDVW ATGVTLYCFV YGKCPF---- BACU006951/1-564 SSTAGTPAFM APEAISESGQ SFSGKALDVW ATGVTLYCFV YGKCPF---- 451 500 bmy_00209T0/1-505 RAGAALAPWA GHHGPGCMTD AGPAFVSLSK ---MTFERAH PAQRRWKEKG ENSTTRP00000005533/1-534 IDDFILALHR KIKNEAIVFP EEPRVSEELK DLILKMLDKN PETR----IG ENSBTAP00000009431/1-505 IDDYILALHR KIKNEAVVFP EEPKVSEELK DLILKMLDKN PETR----IG ENSP00000158166/1-520 IDDFILALHR KIKNEPVVFP EEPEISEELK DLILKMLDKN PETR----IG BACU006951/1-564 IDDFILALHR KIKNEAIVFP EEPKVSEELK DLILKMLDKN PETR----IG 501 550 bmy_00209T0/1-505 LFCSPLVPLG GWIHVQESWD SRHPKGGVDG AIHSFT---- ---YSLIHSF ENSTTRP00000005533/1-534 V---PDIKSH PW--VTKNGE EPLPSEEEHC TVVEVTEEEV KNSVRLIPSW ENSBTAP00000009431/1-505 V---PDIKLH PW--VTKNGE EPLPSEEEHC SMVEVTEEEV KNSVRLIPSW ENSP00000158166/1-520 V---PDIKLH PW--VTKNGE EPLPSEEEHC SVVEVTEEEV KNSVRLIPSW BACU006951/1-564 V---PDIKLH PW--VTKNGE EPLPSEEEHC TAVEVTEEEV KNSVKLIPSW 551 600 bmy_00209T0/1-505 NKLSLTSALG QA---GHPX- -LTCRDPRPQ VLPLQGPC-- ---------- ENSTTRP00000005533/1-534 TTVILVKSML RKRSFGNPFE PQARREERSM SAPGSLLS-- --KDGCGEGG ENSBTAP00000009431/1-505 TTVILVKSML RKRSFGNPFE PQARREARSM SAPGSLLS-- --KDGFGEGG ENSP00000158166/1-520 TTVILVKSML RKRSFGNPFE PQARREERSM SAPGNLLV-- ---------- BACU006951/1-564 TTVILVKSML RKRSFGNPFE PQARREERSM SAPESLLSAV AARDTRADID 601 650 bmy_00209T0/1-505 ---------- ----- ENSTTRP00000005533/1-534 KSPELPGVQE DEAAS ENSBTAP00000009431/1-505 KSPELPGVQE DEAAS ENSP00000158166/1-520 ---------- ----- BACU006951/1-564 RGPWTHRAVT LQMLK