KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:29 2014 Check: 00 .. Name: ENSBTAP00000009433/1-673 Len: 1019 Check: 2224 Weight: 1.00 Name: BACU000174/1-664 Len: 1019 Check: 271 Weight: 1.00 Name: ENSTTRP00000003134/1-488 Len: 1019 Check: 8084 Weight: 1.00 Name: ENSP00000372361/1-382 Len: 1019 Check: 8127 Weight: 1.00 Name: bmy_11025T0/1-947 Len: 1019 Check: 1335 Weight: 1.00 // 1 50 ENSBTAP00000009433/1-673 ---------- ---------- ---------- ---------- ---------- BACU000174/1-664 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003134/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000372361/1-382 ---------- ---------- ---------- ---------- ---------- bmy_11025T0/1-947 MAPAGHSGDL VPHLWSKKEN LYECPVVSAT ENNVTITVSF VTNEENREMP 51 100 ENSBTAP00000009433/1-673 ---------- ---------- ---------- ---------- ---------- BACU000174/1-664 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003134/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000372361/1-382 ---------- ---------- ---------- ---------- ---------- bmy_11025T0/1-947 SSFHVVHVLL LQKQQVSDHT ESPHLHRDVG TTCQKLEILT VFQEGELYSK 101 150 ENSBTAP00000009433/1-673 ---------- ---------- ---------- ---------- ---------- BACU000174/1-664 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003134/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000372361/1-382 ---------- ---------- ---------- ---------- ---------- bmy_11025T0/1-947 SSATFQCFLL WFGDVGCSPT NGRQGGLPAR LLREPGAASG LGPVAPAGAR 151 200 ENSBTAP00000009433/1-673 ---------- ---------- ---------- ---------- ---------- BACU000174/1-664 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003134/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000372361/1-382 ---------- ---------- ---------- ---------- ---------- bmy_11025T0/1-947 CGAGRGRRPR GAEARDSASS LRSARAPPPP ASQPPVPPPV AVAPARSALT 201 250 ENSBTAP00000009433/1-673 ---------- ---------- -----MGECS AGRLDLTEQT PILLGSKAMA BACU000174/1-664 ---------- ---------- -----IDKCS AGGLDLTEQT PVLLGNKAMA ENSTTRP00000003134/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000372361/1-382 ---------- ---------- -----MEKCS VGGLELTEQT PALLGNMAMA bmy_11025T0/1-947 GLPDTGQGGR GGHQGRGDPR AAFFGIDKCS AGGLDLTEQT PVLLGSKAMA 251 300 ENSBTAP00000009433/1-673 ASLMDVGDSF GDPASPLVNR SRNSLVEGDN GDDDDVVFIE SIQPPSSSAP BACU000174/1-664 ASFMDI--AF GDPASPLVNR SRNSSAE--- DDDDDVVFIE SIQPPSSSAP ENSTTRP00000003134/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000372361/1-382 TSLMDIGDSF GHPACPLVSR SRNSPVE-DD DDDDDVVFIE SIQPPSISAP bmy_11025T0/1-947 ASFMDV--AF GDPASPLVNR SRNSSAE--- DDDDDVVFIE SIQPPSSSAP 301 350 ENSBTAP00000009433/1-673 VIADQRHFVF PASRNKKLQG HYSVILPSSR YLASQKGNTS ETIVIDDEED BACU000174/1-664 VIADQRNFIF AASRNEKLQG NYSIILPSSR DLASQKGSIS ETIVIDDEED ENSTTRP00000003134/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000372361/1-382 AIADQRNFIF ASSKNEKPQG NYSVIPPSSR DLASQKGNIS ETIVIDDEED bmy_11025T0/1-947 VIADQRNFIF AASRNEKLQG NYSVILPSSR DLASQKGSIS ETIVIDDEED 351 400 ENSBTAP00000009433/1-673 METNGREKTV SSSFIEWGFP GTKNRTKDLD FSTSSLSRSK ---------- BACU000174/1-664 METNGREKTI SSSFIEWALP GSKNRTKDLD FSTSSLSRSK ---------- ENSTTRP00000003134/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000372361/1-382 IETNGGAEKK SSCFIEWGLP GTKNKTNDLD FSTSSLSRSK ---------- bmy_11025T0/1-947 METNGREKTI SSSFIEWALP GSKNRTKDLD FSTSSLSRSK NTSLGDVANG 401 450 ENSBTAP00000009433/1-673 ---------- ---------- TKTAVGPFNP GRMNVAGGEF QNGGFTTHHS BACU000174/1-664 ---------- ---------- TKTAVGPFNP GRMNVAGDIF QNGGFTAHHS ENSTTRP00000003134/1-488 ---------- ---------- ---------- --MNVAGDVF QNGGFTAHHN ENSP00000372361/1-382 ---------- ---------- TKTGVRPFNP GRMNVAGDLF QNGEFATHHS bmy_11025T0/1-947 LQSSNFGVNM QTYTPSLTSQ TKTAVGPFNP GRMNVAGDVF QNGGFTAHHS 451 500 ENSBTAP00000009433/1-673 P--------- ---------- ---------- ---------- ---------- BACU000174/1-664 P--------- ---------- ---------- ---------- ---------- ENSTTRP00000003134/1-488 P--------- ---------- ---------- ---------- ---------- ENSP00000372361/1-382 P--------- ---------- ---------- ---------- ---------- bmy_11025T0/1-947 PVLLAIDQLR ILGKDWKNIT EHLKEIIVRN KKIVSVTYLT NFSYKNIWKR 501 550 ENSBTAP00000009433/1-673 -------DSW ISQSASFPRN QKQPGVDSLS PVASLPKQIF QSSAQQQPTK BACU000174/1-664 -------DSW ISQSASFPRN QKQPGVDSLS PVGSLPKQIF QPSAQQQPTK ENSTTRP00000003134/1-488 -------DSW ISQSASFPRN QKQPGVDSLS PVDSLPKQIF QPSVQQQPTK ENSP00000372361/1-382 -------DSW ISQSASFPSN QKQPGVDSLS PVALLRKQNF QPTAQQQLTK bmy_11025T0/1-947 TKLEAAVDSW ISQSASFPRN QKQPGVDSLS PVDSLPKQIF QPSAQQQPTK 551 600 ENSBTAP00000009433/1-673 AAKITCANCK KPLQKGQTAY QRKGSAHLFC STTCLSSFSH KRTPKKRNVT BACU000174/1-664 PAKITCANCK KPLQKGQTAY QRKGSAHLFC STTCLSSFSH KRTPKKRNGT ENSTTRP00000003134/1-488 PAKITCANCK KPLQKGQTAY QRKGSAHLFC STTCLSSFSH KRTPKKRKVT ENSP00000372361/1-382 PAKITCANCK KPLQKGQTAY QRKGSAHLFC STTCLSSFSH KRTQNTRSII bmy_11025T0/1-947 PAKITCANCK KPLQKGQTAY QRKGSAHLFC STTCLSSFSH KRTPKKRNVT 601 650 ENSBTAP00000009433/1-673 CKKDAPTKKA TVVPQGESSE PFPKCFSTSH LSPYEDSQNL RKRVLNKSRC BACU000174/1-664 CKKGAPAKKA TLVPQGESSE SFQK-FCSTS SSPYEDNQNL RKRVLNKSRC ENSTTRP00000003134/1-488 CKKGAPAKQA TLVPQGESSE SFQK-FCGTS LSPYEDNQNL RKRVLNKSRC ENSP00000372361/1-382 CKKDASTKK- ---------- ---------- ---------- ---------A bmy_11025T0/1-947 CKNTSSS--- ---------- ---------- --PYEDNQNL RKRVLNKSRC 651 700 ENSBTAP00000009433/1-673 TICNKLTE-- ---------- --------IR HEVSVNNVTH KLCSNQCFNK BACU000174/1-664 TVCSKLTE-- ---------- --------IR HEVSVNNVTH KLCSNQCFNK ENSTTRP00000003134/1-488 TICSKLTE-- ---------- --------IR HEVSVNNVTH KLCSNQCFNK ENSP00000372361/1-382 NVILP----- ---------- --------VE SSKSFQEFYS TSCLSPCENN bmy_11025T0/1-947 TICSKLTEVQ DMKETTSPTR TRRTGGVKIR HEVSVNNVTH KLCSNQCFNK 701 750 ENSBTAP00000009433/1-673 YRLANGLVMN C-CEQCGEYL PGKGAGNNVL VIEGQQMRFC CQSCVNEYKQ BACU000174/1-664 YRLANGLVMN C-CEQCGEYL PSKGAGNNLL VIEGQQMRFC CQSCANEYKQ ENSTTRP00000003134/1-488 YRLANGLVMN C-CEQCGEYL PSKGAGNNLL VIEGQQMRFC CQSCVNEYKQ ENSP00000372361/1-382 WNLKKGVFNK SRCTICSKLA E--------- ---------- ------VWI- bmy_11025T0/1-947 YRLANGLVMN C-CEQCGEYL PSKGAGNNLL VIE------- ------VWTH 751 800 ENSBTAP00000009433/1-673 MIETNLKKIL ASENRKRNAV GEENERELYG SLNILPEKTE EIPEKKEKTS BACU000174/1-664 MMETNSKKVL ASENRKRNAV REENERELYG SLNILLEKIE RIPVKKEKTS ENSTTRP00000003134/1-488 MMETNSKKVL ASENRKRNAV REENERELHG SLNILLEKIE RIPVKKEKTS ENSP00000372361/1-382 ---------- ---------- ---------- ---------- ---------- bmy_11025T0/1-947 LKEGRKKTRR TLSGQGLRVP PQGGAAPAVG TWRLSQGRVR GARLPRGSQG 801 850 ENSBTAP00000009433/1-673 ELQVSAECSL DASVVQQNVN LPPSVSDIAD KLQEQLGEKP SEDSIIPAVL BACU000174/1-664 ELQVSVECSQ DTSLIQQDVN LPPSVSTIAD KFQEQLEEKQ SEDSIIPAVL ENSTTRP00000003134/1-488 ELQVSAECSQ DTPLVQQDVN LPPSVSTIAD KFQEQLEEKQ AEDSIIPAVL ENSP00000372361/1-382 ---------- ---------- ---------- ---------- ----FIPKLL bmy_11025T0/1-947 E----GAPHP GSPGPDPASA LPPIA----- ----QMGLQE PGPGASPLLL 851 900 ENSBTAP00000009433/1-673 SADP-GTWPR ILSIKQRDTL V------END PPQVRNFNFP KDSTGRKFSE BACU000174/1-664 SADP-GTWPR VLSIKERDTL V------END PPQVRNFNFP KDSTGRKFSE ENSTTRP00000003134/1-488 SADP-GTWPR ILSIKERDTL V------END PPQVRNFNFP KDSTGRKFSE ENSP00000372361/1-382 FRLT------ ---------- ---------- ---VIILTF- ---------K bmy_11025T0/1-947 VPLPLGRRAR ALAHRPRAEP CLRVVGAEEN VDISRITAFS HTAATSNITV 901 950 ENSBTAP00000009433/1-673 TYYTRILANG EK-------T TRSWLLYSTS KDSVFCLYCK LFGEGKNQLK BACU000174/1-664 TYYTRILPNG EK-------T TRSWLLYSIS KDSVFCLYCR LFGEGKNQLK ENSTTRP00000003134/1-488 TYYTRILPNG EK-------T TRSWLLYSTS KDSVFCLYCK LFGEGKNQLK ENSP00000372361/1-382 CYYV------ ---------- ---------- ---LFHLH-- ---------- bmy_11025T0/1-947 TYGVRDLPSS QPWEGCEQGR AQSGAHARAT RAPWAQQYAG ALAPARLRRR 951 1000 ENSBTAP00000009433/1-673 NENGCRDWQH LSHILSKHEE SEMHINNSVK YSKLKSDLKT SKIVEASEHR BACU000174/1-664 NENGCKDWQH LSHILSKHEE SEMHINNSVK YSKLKSDLNK SKTV---EHR ENSTTRP00000003134/1-488 NENGCKDWQH LSHILSKHEE SEMHINNSVK YSKLKSDLKK SKTV---EHR ENSP00000372361/1-382 ---------- ---------- ---------- ---------- -------NAR bmy_11025T0/1-947 GGACAASLLP TAVVAAPSWA SGRGVSAGGG LAAFSSASFP TPVLCADIDR 1001 1050 ENSBTAP00000009433/1-673 LQEREGKDGV KLLYTLDLI BACU000174/1-664 LQEKVGKEGV KLLYTLDLI ENSTTRP00000003134/1-488 LQENMGKEGV KLLYT---- ENSP00000372361/1-382 VLDV------ --------- bmy_11025T0/1-947 QVEL------ ---------