KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:31 2014 Check: 00 .. Name: ENSP00000257290/1-1089 Len: 1136 Check: 6325 Weight: 1.00 Name: ENSBTAP00000009441/1-1089 Len: 1136 Check: 9383 Weight: 1.00 Name: bmy_17856T0/1-712 Len: 1136 Check: 8833 Weight: 1.00 Name: BACU002235/1-1113 Len: 1136 Check: 5463 Weight: 1.00 Name: ENSTTRP00000011756/1-1040 Len: 1136 Check: 41 Weight: 1.00 // 1 50 ENSP00000257290/1-1089 ---------- -----MGTSH PAFLVLGCL- --------LT GLSLILCQLS ENSBTAP00000009441/1-1089 ---------- -----MGTSH WALLVLGCL- --------FT GPSLILCQLS bmy_17856T0/1-712 ---------- -----MGTSY WALLVLGCL- --------LT GPSLILCQLS BACU002235/1-1113 MRVQIRFSTA QVVQGQSSGL WGLTVSNLLQ EIRVENFAFA GPSLILCQLS ENSTTRP00000011756/1-1040 ---------- -----MGTSH WALLVLGCL- --------VT GPSLILCQLS 51 100 ENSP00000257290/1-1089 LPSILPNENE KVVQLNSSFS LRCFGESEVS WQYPMSEEES SDVEIRNEEN ENSBTAP00000009441/1-1089 LPSILPNENE RVVQLNSSFS LRCFGESEVS WQYPMSEEEY PDVEIRNEEN bmy_17856T0/1-712 LPSILPNENE RVVQLNSSFS LRCFGESEVS WQYPMSEEEN PNVEIRNEEN BACU002235/1-1113 LPSILPNENE RVVQLNSSFS LRCFGESEVS WQYPMSEEEN PNVEIRNEEN ENSTTRP00000011756/1-1040 LPSILPNENE RIVQLNSSFS LRCFGESEVS WQYPMSEEEN PNVEIRDEEN 101 150 ENSP00000257290/1-1089 NSGLFVTVLE VSSASAAHTG LYTCYYNHTQ TEENELEGRH IYIYVPDPDV ENSBTAP00000009441/1-1089 NSGLFVTVLE VVSASAAHTG LYTCYYNHTQ MDENEIEGRH IYIYVPDPDV bmy_17856T0/1-712 NSGLFVTVLE VVSASAAHTG LYTCYYNHTQ LEESEIEGRR IYIYVPDPDV BACU002235/1-1113 NSGLFVTVLE VVSASAAHTG LYTCYYNHTQ LEESEIEGRR IYIYVPDPDV ENSTTRP00000011756/1-1040 NSGLFVTVLE VVSASAAHTG LYTCYYNHTQ LEESEIEGRR IYIYVPDPDV 151 200 ENSP00000257290/1-1089 AFVPLGMTDY LVIVEDDDSA IIPCRTTDPE TPVTLHNSEG VVPASYDSRQ ENSBTAP00000009441/1-1089 AFVPLGMTDS LVIVEDEDSV IIPCRTTDPE TPVTLLSSEG IVPASYDSRQ bmy_17856T0/1-712 AFVPLGMTDY LVIVEDDDSA IIPCRTTDPE TPVILLSSDG VVHASYDSRQ BACU002235/1-1113 AFVPLGMTDY LVIVEDDDSA IIPCRTTDPE TPVILLSSDG VVHASYDSRQ ENSTTRP00000011756/1-1040 AFVPLGMTDY LVIVEDDDSA IIPCRTTDPE TPVILLSSDG VVHASYDSRQ 201 250 ENSP00000257290/1-1089 GFNGTFTVGP YICEATVKGK KFQTIPFNVY ALKATSELDL EMEALKTVYK ENSBTAP00000009441/1-1089 GFKGTFSVGL YICEATVRGK KFQTIPFNVY AYTATSKLDL EMESPKTVYK bmy_17856T0/1-712 GFNGTFTVGP YICEATVRGK KFQTIPFNVY ALKATSELDL EMEALKTVYK BACU002235/1-1113 GFNGTFTVGP YICEATVRGK KFQTIPFNVY ALKATSELDL EMEALKTVYK ENSTTRP00000011756/1-1040 GFNGTFTVGP YICEATVRGK KFQTIPFNVY ALKATSELDL EMEALKTVYK 251 300 ENSP00000257290/1-1089 SGETIVVTCA VFNNEVVDLQ WTYPGEVKGK GITMLEEIKV PSIKLVYTLT ENSBTAP00000009441/1-1089 AGESIVVTCT VFNNEVVDFQ WTYPGQMKGK GITRLEETKF PSIKLVYTLR bmy_17856T0/1-712 AGESIVVTCA VFNNEVVDLQ WTYPGQVNLF GYNLLKQSP- ---------- BACU002235/1-1113 AGESIVVTCA VFNNEVVDLQ WTYPGQVKGK GITMLEETKV PSIKLVYTLM ENSTTRP00000011756/1-1040 AGESIVVTCA VFNNEVVDLQ WTYPGQVKGK GLTMLEETKV PSIKLVYTLM 301 350 ENSP00000257290/1-1089 VPEATVKDSG DYECAARQAT REVKEMKKVT ISVHEKGFIE IKPTFSQLEA ENSBTAP00000009441/1-1089 VPEATVKDSG DYECAAHQAT KEVKKMRNVT ISVHEKGFIE IKPNFNLLEA bmy_17856T0/1-712 ---------- ---------- ---------- -------FL- ---------- BACU002235/1-1113 VPEATVKDSG DYECAARQAT KEVKEMKKVT ISVHEKGFIE IKPNFSPLEA ENSTTRP00000011756/1-1040 VPEATVKDSG DYECAARQAT KEVKEMKKVT ISVHEKGFIE IRPNFSPLEA 351 400 ENSP00000257290/1-1089 VNLHEVKHFV VEVRAYPPPR ISWLKNNLTL IENLTEITTD VEKIQEIRYR ENSBTAP00000009441/1-1089 VNLHEVKHFV VDVQAYPPPK ITWLKDNLTL IENLTEITTD IEKIQEISYR bmy_17856T0/1-712 ---------- ---------- ---------- ---------- ------LRYR BACU002235/1-1113 VNLHEVKHFV VDVQAYPPPR IAWLKDNLTL IENLTEITTD IEKIQEIRYR ENSTTRP00000011756/1-1040 VNLHEVKHFV VDVQAYPPPR IAWLKDNLTL IENLTEITTD IEKIQEIRYR 401 450 ENSP00000257290/1-1089 SKLKLIRAKE EDSGHYTIVA QNEDAVKSYT FELLTQVPSS ILDLVDDHHG ENSBTAP00000009441/1-1089 SKLKLIRAKE EDSGHYTIVV QNEDDVKSYT FELLTQVPSS ILDLVDDHHG bmy_17856T0/1-712 SKLKLIRAKE EDSGHYTIVV QNEDDVKSYT FELLTQVPSS ILDLVDDHHG BACU002235/1-1113 SKLKLIRAKE EDSGHYTIVV QNEDDVKSYT FELLTQVPSS ILDLVDDHHG ENSTTRP00000011756/1-1040 SKLKLIRAKE EDSGHYTIVV QNEDDVKSYT FELLTQVPSS ILDLVDDHHG 451 500 ENSP00000257290/1-1089 STGGQTVRCT AEGTPLPDIE WMICKDIKKC NNETSWTILA NNVSNIITEI ENSBTAP00000009441/1-1089 SNGGQTVRCT AEGTPLPDIE WMVCKDIKKC NNETSWTVLA NNVSNIITGV bmy_17856T0/1-712 SNGGQTVRCT AEGTPLPDIE WMICKDIKKC NNETSWTILA NNVSNIITEV BACU002235/1-1113 SNGGQTVRCT AEGTPLPDIE WMICKDIKKC NNETSWTILA NNVSNIITEV ENSTTRP00000011756/1-1040 SNGGQTVRCT AEGTPLPDIE WLICKDIKKC NNETSWTILA NNVSNIITEV 501 550 ENSP00000257290/1-1089 HSRDRSTVEG RVTFAKVEET IAVRCLAKNL LGAENRELKL VAPTLRSELT ENSBTAP00000009441/1-1089 HPRDRSTVEG QVTFAKVEET IAVRCLAKNL LGVESRELKL VAPTLRSELT bmy_17856T0/1-712 HPRDRSMVEG QVTFAKVEET IAVRCLAKNL LGVESRELKL VAPS------ BACU002235/1-1113 HPRDRSMVEG QVTFAKVEET IAVRCLAKNL LGVESRELKL VAPTLRSELT ENSTTRP00000011756/1-1040 HPRDRSMVEG QVTFAKVEET IAVRCLAKNL LGVESRELKL VAPTLRSELT 551 600 ENSP00000257290/1-1089 VAAAVLVLLV IVIISLIVLV VIWKQKPRYE IRWRVIESIS PDGHEYIYVD ENSBTAP00000009441/1-1089 VAAAVLVLLV IVIISLIVLV VIWKQKPRYE IRWRVIESIS PDGHEYIYVD bmy_17856T0/1-712 ---------- ---------- ---------- ---------- ---------- BACU002235/1-1113 VAAAVLVLLV IVIISLIVLV VIWKQKPRYE IRWRVIESIS PDGHEYIYVD ENSTTRP00000011756/1-1040 VAAAVLVLLV IVIISLIVLV VIWKQKPRYE IRWRVIESIS PDGHEYIYVD 601 650 ENSP00000257290/1-1089 PMQLPYDSRW EFPRDGLVLG RVLGSGAFGK VVEGTAYGLS RSQPVMKVAV ENSBTAP00000009441/1-1089 PMQLPYDSRW EFPRDGLVLG RILGSGAFGK VVEGTAYGLS RSQPVMKVAV bmy_17856T0/1-712 ---------- ---------- ---------- ---------- ---------- BACU002235/1-1113 PMQLPYDSRW EFPRDGLVLG RILGSGAFGK VVEGTAYGLS RSQPVMKVAV ENSTTRP00000011756/1-1040 PMQLPYDSRW EFPRDGLVLG RILGSGAFGK VVEGTAYGLS RSQPVMKVAV 651 700 ENSP00000257290/1-1089 KMLKPTARSS EKQALMSELK IMTHLGPHLN IVNLLGACTK SGPIYIITEY ENSBTAP00000009441/1-1089 KMLKPTARSS EKQALMSELK IMTHLGPHLN IVNLLGACTK SGPIYIITEY bmy_17856T0/1-712 ---------- ---------- ---------- ---------- --PIYIITEY BACU002235/1-1113 KMLKPTARSS EKQALMSELK IMTHLGPHLN IVNLLGACTK SGPIYIITEY ENSTTRP00000011756/1-1040 KMLKPTARSS EKQALMSELK IMTHLGPHLN IVNLLGACTK SGPIYIITEY 701 750 ENSP00000257290/1-1089 CFYGDLVNYL HKNRDSFLSH HPEKPKKELD IFGLNPADES TRS------- ENSBTAP00000009441/1-1089 CFYGDLVNYL HKNRDSFLSH HPEKPKKELD IFGLNPADES TRS------- bmy_17856T0/1-712 CFYGDLVNYL HKNRDSFLSR HPEKPKKELD IFGLNPADES TRRPLNASLA BACU002235/1-1113 CFYGDLVNYL HKNRDSFLSR HPEKPKKELD IFGLNPADES TRS------- ENSTTRP00000011756/1-1040 CFYGDLVNYL HKNRDSFLSR HPEKPKKELD IFGLNPADES TRS------- 751 800 ENSP00000257290/1-1089 ---------- ------YVIL SFENNGDYMD MKQADTTQYV PMLERKEVSK ENSBTAP00000009441/1-1089 ---------- ------YVIL SFENNGDYMD MKQADTTQYV PMLERKEVSK bmy_17856T0/1-712 RDAPVLISCE KLSEDFYVIL SFENNGDYMD MKQADTTQYV PMLERKEVSK BACU002235/1-1113 ---------- ------YVIL SFENNGDYMD MKQADTTQYV PMLERKEVSK ENSTTRP00000011756/1-1040 ---------- ------YVIL SFENNGDYMD MKQADTTQYV PMLERKEVSK 801 850 ENSP00000257290/1-1089 YSDIQRSLYD RPASYKKKSM LDSEVKNLLS DDNSEGLTLL DLLSFTYQVA ENSBTAP00000009441/1-1089 YSDIQRALYD RPASYKKKSM LDSEVKNLLS DDNSEGLTLL DLLSFTYQVA bmy_17856T0/1-712 YSDIQRALYD RPASYKKKSM LDSEVKNLLS DDNSEGLTLL DLLSFTYQVA BACU002235/1-1113 YSDIQRALYD RPASYKKKSM LDSEVKNLLS DDNSEGLTLL DLLSFTYQVA ENSTTRP00000011756/1-1040 YSDIQRALYD RPASYKKKSM LDSEVKNLLS DDNSEGLTLL DLLSFTYQVA 851 900 ENSP00000257290/1-1089 RGMEFLASKN CVHRDLAARN VLLAQGKIVK ICDFGLARDI MHDSNYVSKG ENSBTAP00000009441/1-1089 RGMEFLASKN CVHRDLAARN VLLAQGKIVK ICDFGLARDI MHDSNYVSKG bmy_17856T0/1-712 RGMEFLASKN ---------- ---------- ---------- ---------- BACU002235/1-1113 RGMEFLASKN CVHRDLAARN VLLAQGKIVK ICDFGLARDI MHDSNYVSKG ENSTTRP00000011756/1-1040 RGMEFLASKN CVHRDLAARN VLLAQGKIVK ICDFGLARDI MHDSNYVSKG 901 950 ENSP00000257290/1-1089 STFLPVKWMA PESIFDNLYT TLSDVWSYGI LLWEIFSLGG TPYPGMMVDS ENSBTAP00000009441/1-1089 STFLPVKWMA PESIFDNLYT TLSDVWSYGI LLWEIFSLGG TPYPGMMVDS bmy_17856T0/1-712 ---------- ---------- ---------- ---------- ---------- BACU002235/1-1113 STFLPVKWMA PESIFDNLYT TLSDVWSYGI LLWEIFSLGG TPYPGMMVDS ENSTTRP00000011756/1-1040 STFLPVKWMA PESIFDNLYT TLSDVWSYGI LLWEIFSLGG TPYPGMVVDS 951 1000 ENSP00000257290/1-1089 TFYNKIKSGY RMAKPDHATS EVYEIMVKCW NSEPEKRPSF YHLSEIVENL ENSBTAP00000009441/1-1089 TFYNKIKSGY RMAKPDHATS EVYEIMVKCW NSEPEKRPSF YHLSEIVENL bmy_17856T0/1-712 ---------- ---------- ---------- ---------- ---------- BACU002235/1-1113 TFYNKIKSGY RMAKPDHATS EVYEIMVKCW NSEPEKRPSF YHLSEIVENL ENSTTRP00000011756/1-1040 TFYNKIKSGY RMAKPDHATS EVYEIMVKCW NSEPEKRPSF YHLSEIVENL 1001 1050 ENSP00000257290/1-1089 LPGQYKKSYE KIHLDFLKSD HPAVARMRVD SDNAYIGVTY KNEEDKLKDW ENSBTAP00000009441/1-1089 LPGQYKKSYE KIHLDFLKSD HPAVARMRVD SDNAYIGVTY KNEEDKLKDW bmy_17856T0/1-712 -------SYE KIHLDFLKSD HPAVARMRVD SDNAYIGVTY KNEEDKLKDW BACU002235/1-1113 LPGQYKKSYE KIHLDFLKSD HPAVARMRVD SDNAYIGVTY KNEEDKLKDW ENSTTRP00000011756/1-1040 LPGQYKKSYE KIHLDFLKSD HPAVARMRVD SDNAYIGVTY KNEEDKLKDW 1051 1100 ENSP00000257290/1-1089 EGGLDEQRLS ADSGYIIPLP DIDPVPEEED LGKRNRHSSQ TSEESAIETG ENSBTAP00000009441/1-1089 EGGLDEQRLS ADSGYIIPLP DIDPVPEEED LGKRNRHSSQ TSEESAIETG bmy_17856T0/1-712 EGGLDEQRLS ADSGYIIPLP DIDPVPEEED LGKRNRHSSQ TSEESAIETG BACU002235/1-1113 EGGLDEQRLS ADSGYIIPLP DIDPVPEEED LGKRNRHSSQ TSEESAIETG ENSTTRP00000011756/1-1040 EGGLDEQRLS ADSGYIIPLP DIDPVPEEED LGKRNRH--- ---------- 1101 1150 ENSP00000257290/1-1089 SSSSTFIKRE DETIEDIDMM DDIGIDSSDL VEDSFL ENSBTAP00000009441/1-1089 SSSSTFIKRE DETIEDIDMM DDIGIDSSDL VEDSFL bmy_17856T0/1-712 SSSSTFIKRE DETIEDIDMM DDIGIDSSDL VEDSFL BACU002235/1-1113 SSSSTFIKRE DETIEDIDMM DDIGIDSSDL VEDSFL ENSTTRP00000011756/1-1040 ---------- ---------- ---------- ------