KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:33 2014 Check: 00 .. Name: ENSTTRP00000000180/1-703 Len: 1210 Check: 184 Weight: 1.00 Name: bmy_08512T0/1-663 Len: 1210 Check: 325 Weight: 1.00 Name: BACU010203/1-1209 Len: 1210 Check: 8623 Weight: 1.00 Name: ENSP00000376472/1-705 Len: 1210 Check: 2897 Weight: 1.00 Name: ENSBTAP00000009477/1-705 Len: 1210 Check: 3338 Weight: 1.00 // 1 50 ENSTTRP00000000180/1-703 ---------- ---------- ---------- --------MT KLGFLRLSYE bmy_08512T0/1-663 TLPGLGAPLN GWQGEASGFL RKPGQLFECH LLPPIDVKMT KLGFLRLSYE BACU010203/1-1209 MALRMLRRWG VPRWVVSGVL HFV-KLFECH LLPPIDVKMT KLGFLRLSYE ENSP00000376472/1-705 ---------- ---------- ---------- --------MT KFGFLRLSYE ENSBTAP00000009477/1-705 ---------- ---------- ---------- --------MT KLGFLRLSYE 51 100 ENSTTRP00000000180/1-703 KQDTLLKLLI LSMAAVLSFS TRLFAVLRFE SVIHEFDPXX XXXXXXXXXX bmy_08512T0/1-663 KQDTLLKLLI LSMAAVLSFS TRLFAVLRFE SVIHEFDPYF NYRTTRFLAE BACU010203/1-1209 KQDTLLKLLI LSMAAVLSFS TRLFAVLRFE SVIHEFDPYF NYRTTRFLAE ENSP00000376472/1-705 KQDTLLKLLI LSMAAVLSFS TRLFAVLRFE SVIHEFDPYF NYRTTRFLAE ENSBTAP00000009477/1-705 KQDTLLKLLI LSMAAVLSFS TRLFAVLRFE SVIHEFDPYF NYRTTRFLAE 101 150 ENSTTRP00000000180/1-703 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL MITSAAIYHV LHFFHITIDI bmy_08512T0/1-663 EGFYKFHNWF DDRAWYPLGR IIGGTIYPGL MITSAAIYHV LHFFHITIDI BACU010203/1-1209 EGFYKFHNWF DDRAWYPLGR IIGGTIYPGL MITSAAIYHV LHFFHITIDI ENSP00000376472/1-705 EGFYKFHNWF DDRAWYPLGR IIGGTIYPGL MITSAAIYHV LHFFHITIDI ENSBTAP00000009477/1-705 EGFYKFHNWF DDRAWYPLGR IIGGTIYPGL MITSAAIYHV LHFFHITIDI 151 200 ENSTTRP00000000180/1-703 RNVCVFLAPL FSSFTTIVTY HLTKELKDAG AGLLAAAMIA VVPGYISRSV bmy_08512T0/1-663 RNVCVFLAPL FSSFTTIVTY HLTKELKDAG AGLLAAAMIA VVPGYISRSV BACU010203/1-1209 RNVCVFLAPL FSSFTTIVTY HLTKELKDAG AGLLAAAMIA VVPGYISRSV ENSP00000376472/1-705 RNVCVFLAPL FSSFTTIVTY HLTKELKDAG AGLLAAAMIA VVPGYISRSV ENSBTAP00000009477/1-705 RNVCVFLAPL FSSFTTIVTY HLTKELKDAG AGLLAAAMIA VVPGYISRSV 201 250 ENSTTRP00000000180/1-703 AGSYDNEGIA IFCMLLTYYM WIKAVKTGSI YWAAKCALAY FYMVSSWGGY bmy_08512T0/1-663 AGSYDNEGIA IFCMLLTYYM WIKAVKTGSI YWAAKCALAY FYMVSSWGGY BACU010203/1-1209 AGSYDNEGIA IFCMLLTYYM WIKAVKTGSI YWAAKCALAY FYMVSSWGGY ENSP00000376472/1-705 AGSYDNEGIA IFCMLLTYYM WIKAVKTGSI CWAAKCALAY FYMVSSWGGY ENSBTAP00000009477/1-705 AGSYDNEGIA IFCMLLTYYM WIKAVKTGSI YWAAKCALAY FYMVSSWGGY 251 300 ENSTTRP00000000180/1-703 VFLINLIPLH VLVLMLTGRF SHRIYVAYCT VYCLGTILSM QISFVGFQPV bmy_08512T0/1-663 VFLINLIPLH VLVLMLTGRF SHRIYVAYCT VYCLGTILSM QISFVGFQPV BACU010203/1-1209 VFLINLIPLH VLVLMLTGRF SHRIYVAYCT VYCLGTILSM QISFVGFQPV ENSP00000376472/1-705 VFLINLIPLH VLVLMLTGRF SHRIYVAYCT VYCLGTILSM QISFVGFQPV ENSBTAP00000009477/1-705 VFLINLIPLH VLVLMLTGRF SHRIYVAYCT VYCLGTILSM QISFVGFQPV 301 350 ENSTTRP00000000180/1-703 LSSEHMAAFG VFGLCQIHAF VDYLRSKLNP QQFEVLFRSV ISLVGFVLLT bmy_08512T0/1-663 LSSEHMAAFG VFGLCQIHAF VDYLRSKLNP QQFEVLFRSV ISLVGFVLLT BACU010203/1-1209 LSSEHMAAFG VFGLCQIHAF VDYLRSKLNP QQFEVLFRSV ISLVGFVLLT ENSP00000376472/1-705 LSSEHMAAFG VFGLCQIHAF VDYLRSKLNP QQFEVLFRSV ISLVGFVLLT ENSBTAP00000009477/1-705 LSSEHMAAFG VFGLCQIHAF VDYLRSKLNP QQFEVLFRSV ISLVGFVLLT 351 400 ENSTTRP00000000180/1-703 VGALLMLTXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXSYYF bmy_08512T0/1-663 VGALLMLTGK ISPWTGRFYS LLDPSYAKNN IPIIASVSEH QPTTWSSYYF BACU010203/1-1209 VGALLMLTGK ISPWTGRFYS LLDPSYAKNN IPIIASVSEH QPTTWSSYYF ENSP00000376472/1-705 VGALLMLTGK ISPWTGRFYS LLDPSYAKNN IPIIASVSEH QPTTWSSYYF ENSBTAP00000009477/1-705 IGALLMLTGK ISPWTGRFYS LLDPSYAKNN IPIIASVSEH QPTTWSSYYF 401 450 ENSTTRP00000000180/1-703 D--QLVFMFP VGLYYCFSNL SDARIFIIMY GVTSMYFSAV MVRLMLVLAP bmy_08512T0/1-663 DLQLLVFMFP A--------- --LRVFFV-- ---------- ---------P BACU010203/1-1209 DLQLLVFMFP VGLYYCFSNL SDARIFIIMY GVTSMYFSAV MVRLMLVLAP ENSP00000376472/1-705 DLQLLVFMFP VGLYYCFSNL SDARIFIIMY GVTSMYFSAV MVRLMLVLAP ENSBTAP00000009477/1-705 DLQLLVFMFP VGLYYCFSNL SDARIFIIMY GVTSMYFSAV MVRLMLVLAP 451 500 ENSTTRP00000000180/1-703 VMCILSGIGV SQVLSTYMKN LDISRPDKKN KKQQDSTYPI KNEVASGMIL bmy_08512T0/1-663 LHGRFSIDAV QGLPSEHLRG ---------- ---------- -CVVASGMIL BACU010203/1-1209 VMCILSGIGV SQVLSTYMKN LDISRPDKKN KKQQDSTYPI KNEVASGMIL ENSP00000376472/1-705 VMCILSGIGV SQVLSTYMKN LDISRPDKKS KKQQDSTYPI KNEVASGMIL ENSBTAP00000009477/1-705 VMCILSGIGV SQVLSTYMKN LDISRQDKKS KKQQDSTYPI KNEVASGMIL 501 550 ENSTTRP00000000180/1-703 VMAFFLITYT FHSTWVTSEA YSSPSIVLSA RGGDGSRIIF DDFREAYYWL bmy_08512T0/1-663 VMAFFLITYT FHSTWVTSEA YSSPSIVLSA RGGDGSRIIF DDFREAYYWL BACU010203/1-1209 VMAFFLITYT FHSTWVTSEA YSSPSIVLSA RGGDGSRIIF DDFREAYYWL ENSP00000376472/1-705 VMAFFLITYT FHSTWVTSEA YSSPSIVLSA RGGDGSRIIF DDFREAYYWL ENSBTAP00000009477/1-705 VMAFFLITYT FHSTWVTSEA YSSPSIVLSA RGGDGSRIIF DDFREAYYWL 551 600 ENSTTRP00000000180/1-703 RHNTPEDAKV MSWWDYGYQI TAMANRTILV DNNTWNNTHI SRVGQAMAST bmy_08512T0/1-663 RHNTPEDAKV MSWWDYGYQI TAMANRTILV DNNTWNNTHI SRVGQAMAST BACU010203/1-1209 RHNTPEDAKV MSWWDYGYQI TAMANRTILV DNNTWNNTHI SRVGQAMAST ENSP00000376472/1-705 RHNTPEDAKV MSWWDYGYQI TAMANRTILV DNNTWNNTHI SRVGQAMAST ENSBTAP00000009477/1-705 RHNTPEDAKV MSWWDYGYQI TAMANRTILV DNNTWNNTHI SRVGQAMAST 601 650 ENSTTRP00000000180/1-703 EEKAYEIMRE LDVSYVLVIF GGLTGYSSDD INKFLWMVRI GGSTDTGKHI bmy_08512T0/1-663 EEKAYEIMRE LDVSYVLVIF GGLTGYSSDD INKFLWMVRI GGSTDTGKHI BACU010203/1-1209 EEKAYEIMRE LDVSYVLVIF GGLTGYSSDD INKFLWMVRI GGSTDTGKHI ENSP00000376472/1-705 EEKAYEIMRE LDVSYVLVIF GGLTGYSSDD INKFLWMVRI GGSTDTGKHI ENSBTAP00000009477/1-705 EEKAYEIMRE LDVSYVLVIF GGLTGYSSDD INKFLWMVRI GGSTDTGKHI 651 700 ENSTTRP00000000180/1-703 KEHDYYTPTG EFRVDREGSP VLLNCLMYKM CYYRFGQVYT EAKRPLGYDR bmy_08512T0/1-663 KEHDYYTPTG EFRVD----- ---------- ---------- --QRPLGYDR BACU010203/1-1209 KEHDYYTPTG EFRVDREGSP VLLNCLMYKM CYYRFGQVYT EAKRPLGYDR ENSP00000376472/1-705 KENDYYTPTG EFRVDREGSP VLLNCLMYKM CYYRFGQVYT EAKRPPGFDR ENSBTAP00000009477/1-705 KEHDYYTPTG EFRVDREGSP VLLNCLMYKM CYYRFGQVYT EAKRPLGYDR 701 750 ENSTTRP00000000180/1-703 VRNAEIGNKD FELDVLEEAY TTEHWLVRIY K--------- ---------- bmy_08512T0/1-663 VRNAEIGNKD FELDVLEEAY TTEHWLVRIY K--------- ---------- BACU010203/1-1209 VRNAEIGNKD FELDVLEEAY TTEHWLVRIY KHWSPNSSAS LVRFLGRLEG ENSP00000376472/1-705 VRNAEIGNKD FELDVLEEAY TTEHWLVRIY K--------- ---------- ENSBTAP00000009477/1-705 VRNAEIGNKD FELDVLEEAY TTEHWLVRIY K--------- ---------- 751 800 ENSTTRP00000000180/1-703 ---------- ---------- ----VKD--- ---------- ---------- bmy_08512T0/1-663 ---------- ---------- ----VKD--- ---------- ---------- BACU010203/1-1209 GVSACRLRGN EASAGLSGVM AVPFVEDWDL VQTLGEGAYG EVQLAVNRRT ENSP00000376472/1-705 ---------- ---------- ----VKD--- ---------- ---------- ENSBTAP00000009477/1-705 ---------- ---------- ----VKD--- ---------- ---------- 801 850 ENSTTRP00000000180/1-703 ---------- ---------- ---------- ---------- ---------- bmy_08512T0/1-663 ---------- ---------- ---------- ---------- ---------- BACU010203/1-1209 EEAVAVKIVD MKRAVDCPEN IKKEICINKM LNHENVVKFY GHRREGNIQY ENSP00000376472/1-705 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009477/1-705 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000000180/1-703 ---------- ---------- ---------- ---------- ---------- bmy_08512T0/1-663 ---------- ---------- ---------- ---------- ---------- BACU010203/1-1209 LFLEYCSGGE LFDRIEPDIG MPEQDAQRFF HQLMAGVVYL HGIGITHRDI ENSP00000376472/1-705 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009477/1-705 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000000180/1-703 ------LDNR ---------- ---------- ---------- ---------- bmy_08512T0/1-663 ------LDNR ---------- ---------- ---------- ---------- BACU010203/1-1209 KPENLLLDER DNLKISDFGL ATVFRHNNRE RLLNKMCGTL PYVAPELLKR ENSP00000376472/1-705 ------LDNR ---------- ---------- ---------- ---------- ENSBTAP00000009477/1-705 ------LDNR ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000000180/1-703 ---------- ---------- ---------- ---------- ---------- bmy_08512T0/1-663 ---------- ---------- ---------- ---------- ---------- BACU010203/1-1209 KEFHAEPVDV WSCGIVLTAM LAGALLHKIL VENPSVRITI PDIKKDRWYN ENSP00000376472/1-705 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009477/1-705 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000000180/1-703 ---------- ---------- --GLSRT--- ---------- ---------- bmy_08512T0/1-663 ---------- ---------- --GLSRT--- ---------- ---------- BACU010203/1-1209 KPLKKGAKRP RVTSGGVSES PGGFSKHIQS NLDFSPVNSA SSEENVKYSS ENSP00000376472/1-705 ---------- ---------- --GLSRT--- ---------- ---------- ENSBTAP00000009477/1-705 ---------- ---------- --GLSRT--- ---------- ---------- 1051 1100 ENSTTRP00000000180/1-703 ---------- ---------- ---------- ---------- ---------- bmy_08512T0/1-663 ---------- ---------- ---------- ---------- ---------- BACU010203/1-1209 SQPEPRTGLS LWDTSPSYID KLVQGISFSQ PTCPDHMLLN SQLLGTPGSS ENSP00000376472/1-705 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009477/1-705 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000000180/1-703 ---------- ---------- ---------- ---------- ---------- bmy_08512T0/1-663 ---------- ---------- ---------- ---------- ---------- BACU010203/1-1209 QNPWQRLVKR MTRFFTKLDA DKSYQCLKET CEKLGYQWKK SCMNQVTVST ENSP00000376472/1-705 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009477/1-705 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000000180/1-703 ---------- ---------- ---------- ---------- ---------- bmy_08512T0/1-663 ---------- ---------- ---------- ---------- ---------- BACU010203/1-1209 TDRRNNKLIF KVNLVEMDEK ILVDFRLSKG DGLEFKRHFL KIKGKLSDVV ENSP00000376472/1-705 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009477/1-705 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000000180/1-703 ---------- bmy_08512T0/1-663 ---------- BACU010203/1-1209 SSQKVWLPAT ENSP00000376472/1-705 ---------- ENSBTAP00000009477/1-705 ----------