KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:37 2014 Check: 00 .. Name: ENSTTRP00000014974/1-1386 Len: 1438 Check: 6467 Weight: 1.00 Name: BACU011515/1-1385 Len: 1438 Check: 1856 Weight: 1.00 Name: ENSP00000313885/1-1356 Len: 1438 Check: 3459 Weight: 1.00 Name: bmy_15339T0/1-820 Len: 1438 Check: 3318 Weight: 1.00 Name: ENSBTAP00000009496/1-1368 Len: 1438 Check: 4020 Weight: 1.00 // 1 50 ENSTTRP00000014974/1-1386 MDLKEKHV-- --------XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011515/1-1385 ---------- --------GE APLALGLSTR KALSILKEQL EAVLDGHLKE ENSP00000313885/1-1356 MDLKEKHL-- --------GE PPSALGLSTR KALSVLKEQL EAVLEGHLRE bmy_15339T0/1-820 ---------- --------GE APLALGLSTR KALSILKEQL EAVLDGHLKE ENSBTAP00000009496/1-1368 MLFKRAELWT APQGKGGKGE PPLALGLSTR KALSILKEQL EAVLDGHLKE 51 100 ENSTTRP00000014974/1-1386 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011515/1-1385 RKKCLTWKEM CRSSFLHHSN RCSCFHWPGA SLMLLAVLLL LGCYGGQPAG ENSP00000313885/1-1356 RKKCLTWKEV WRSSFLHHSN RCSCFHWPGA SLMLLAVLLL LGCCGGQPAG bmy_15339T0/1-820 RKKCLTWKEM RRSSFLHHSN RCSCFHWPGA SLMLLAVLLL LGCYGGQPAG ENSBTAP00000009496/1-1368 RKKCLTWKEM WRSSFLHHGN RCSCFHWPGA SLMLLAVFLL LACCGGQPAG 101 150 ENSTTRP00000014974/1-1386 XHGVELVNAS ALFLLLLLNL VLIGRQDRLK RREVERRLRG IIDQIQDALR BACU011515/1-1385 SHGVELVNAA ALFLLLLLNL VLIGRQDRLK RREVERRLRG IIDQIQDALR ENSP00000313885/1-1356 SRGVGLVNAS ALFLLLLLNL VLIGRQDRLK RREVERRLRG IIDQIQDALR bmy_15339T0/1-820 SHGVELVNAA ALFLLLLLNL VLIGRQDRLK RREVERRLRG IIDQIQDALR ENSBTAP00000009496/1-1368 SRGVELVNAS ALFLLLLLNL VLIGRQDRLK RQEVERRLRG VIDQIQDALR 151 200 ENSTTRP00000014974/1-1386 DGKEIKWLDA MYPDLHMPFA PSWSLHWAYR DGHLVNLPVS LLVEGDIIAL BACU011515/1-1385 DGKEIKWLDA MYPDLHMPFA PSWSLHWAYR DGHLVNLPVS LLVEGDIIAL ENSP00000313885/1-1356 DGREIQWPSA MYPDLHMPFA PSWSLHWAYR DGHLVNLPVS LLVEGDIIAL bmy_15339T0/1-820 DGKEIKWLDA MYPDLHMPFA PSWSLHWAYR DGHLVNLPVS LLVEGDIIAL ENSBTAP00000009496/1-1368 DGKEVKWPDA MYPDLHMPFA PSWSLHWAYR DGHLVNLPVS LLVEGDIIAL 201 250 ENSTTRP00000014974/1-1386 RPGQESFASL RGIKDDEHIV LEPGDLFPPF SPPPSPRGEV KKGPQNPQQH BACU011515/1-1385 RPGQESFASL RGIKDDEHIV LEPGDLFPPF SPPPSPRGEV KKGPQNPQQH ENSP00000313885/1-1356 RPGQESFASL RGIKDDEHIV LEPGDLFPPF SPPPSPRGEV ERGPQSPQQH bmy_15339T0/1-820 RPGQESFASL RGIKDDEHIV LEPGDLFPPF SPPPSPRGEV KKGPQNPQQH ENSBTAP00000009496/1-1368 RPGQESFASL RGIKDDEHIV LEPGDLFPPF SPPPSPRGEV KKGPQNPQQH 251 300 ENSTTRP00000014974/1-1386 RLFRVLETPV IDNIRWCLDM ALSRPVTALD NERFTVQSVM LHYAVPVVLA BACU011515/1-1385 RLFRVLETPV IDNIRWCLDM ALSRPVTALD NERFTVQSVM LHYAVPVVLA ENSP00000313885/1-1356 RLFRVLETPV IDNIRWCLDM ALSRPVTALD NERFTVQSVM LHYAVPVVLA bmy_15339T0/1-820 RLFRVLETPV IDNIRWCLDM ALSRPVTALD NERFTVQSVM LHFAVPVVLA ENSBTAP00000009496/1-1368 RLFRVLETPV IDNIRWCLDM ALSRPVTALD NERFTVQSVM LRYAVPVVLA 301 350 ENSTTRP00000014974/1-1386 GFLITNALRF MLNAPGVTTW QYTLLQLQVN GVLPILPLLF PVLWVLATAC BACU011515/1-1385 GFLITNALRF MLNAPGVTTW QYTLLQLQVN GVLPILPLLF PVLWVLATAC ENSP00000313885/1-1356 GFLITNALRF IFSAPGVTSW QYTLLQLQVN GVLPILPLLF PVLWVLATAC bmy_15339T0/1-820 GFLITNALRF MLNAPGVTTW QYTLLQLQVN GVLPILPLLF PVLWVLATAC ENSBTAP00000009496/1-1368 SFLITNALRF MLNAPGVTTW QYTLLQLQVN GVLPILPLLF PVLWVLATAC 351 400 ENSTTRP00000014974/1-1386 GEARVLAQMS KASPSSLLAK FSEDTLSSYT EAVSSQEMLR CIWGHFLRVI BACU011515/1-1385 GEARVLAQMS KASPSSLLAK FSEDTLSSYT EAVSSQEMLR CIWGHFLRVI ENSP00000313885/1-1356 GEARVLAQMS KASPSSLLAK FSEDTLSSYT EAVSSQEMLR CIWGHFLRVL bmy_15339T0/1-820 GEARVLAQMS KASPSSLLAK FSEDTLSSYT EAVSSQEMLR CIWGHFLRVI ENSBTAP00000009496/1-1368 GEARVLAQMS KASPSSLLAK FSEDTLSSYT EAVSSQEMLR CIWGHFLRVI 401 450 ENSTTRP00000014974/1-1386 QGTSPTLSHS SSLLHSLGSV TVLCCVDKQG ILSWPNPSPE TVLFFSGKVE BACU011515/1-1385 QGASPTLSHS SSLLHSLGSV TVLCCVDKQG VLSWPNPSPE TVLFFSGKVE ENSP00000313885/1-1356 GGTSPTLSHS SSLLHSLGSV TVLCCVDKQG ILSWPNPSPE TVLFFSGKVE bmy_15339T0/1-820 QGTSPTLSHS SSLLHSLGSV TVLCCVDKQG VLSWPNPSPE TVLFFSGKVE ENSBTAP00000009496/1-1368 QGTSPTLSHS SSLLHSLGSV TVLCCVDKQG ILSWPNPSPE TVLFFSGKVE 451 500 ENSTTRP00000014974/1-1386 PPHSSHEDLT DDLSTRSFCH P----EPRER DALLAGSLNP TLHLSNEQEH BACU011515/1-1385 PPHSSHEDLT DDLSTRSFCH PEVEEEPRER DALLAGSLNP TLHLSNEQER ENSP00000313885/1-1356 PPHSSHEDLT DGLSTRSFCH P----EPHER DALLAGSLNN TLHLSNEQER bmy_15339T0/1-820 PPHSSHEDLT DDLSTRSFCH PEVEEEPRER DALLAGSLNP TLHLSNEQER ENSBTAP00000009496/1-1368 PPHSSHEDLT DDLSTRSFCH P----EPHER DALLAGSLNA PLHLSNEQER 501 550 ENSTTRP00000014974/1-1386 -GNWPGDGPK APEPSSHHRA HGRSKHLSGS SVSFSRDTEG GE-EDPGKXX BACU011515/1-1385 -GNWPGDGPK APEPSSHHRA HGRSKHLSGS SVSFSRDTEG GE-EEPGK-- ENSP00000313885/1-1356 -GDWPGEAPK PPEPYSHHKA HGRSKHPSGS NVSFSRDTEG GE-EEPSKTQ bmy_15339T0/1-820 -GNWPGDGPK APEPSSHHRA HGRSKHLSGS SVSFSRDTEG GE-EEPGKTQ ENSBTAP00000009496/1-1368 GGHWPSDGPK ASEPHPHHRA HGRSKHLSGS SVSFSRDTEG GEDDDPSKTQ 551 600 ENSTTRP00000014974/1-1386 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011515/1-1385 HGLEGEPYEA EDFVCDYHLE MLSLSQDQQN PSCIQFDDSN WQLHLTSLKP ENSP00000313885/1-1356 PGMESDPYEA EDFVCDYHLE MLSLSQDQQN PSCIQFDDSN WQLHLTSLKP bmy_15339T0/1-820 HGLEGEPYEA EDFVCDYHLE MLSLSQDQQN PSCIQFDDSN WQLHLTSLKP ENSBTAP00000009496/1-1368 HGPEGEPYEA EDFVCDYHLE MLSLSQDQQN PSCIQFDDSN WQLHLTSLKP 601 650 ENSTTRP00000014974/1-1386 XXXXXX-XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011515/1-1385 LGLNALPLDG ASSSGKTTPC GM-DAWREAA QPDRGSVPAR EGGVWGWASS ENSP00000313885/1-1356 LGLNVL-LNL CDASVTERLC RFSDHLCNIA LQESHSAVLP VHVPWGLCEL bmy_15339T0/1-820 LGLNVL-LNL CNASVTERLC RFSDHLCNIA LQESHSTVLP VHVPWGLCEL ENSBTAP00000009496/1-1368 LGLNVL-LNL CDASVTERLC RFSDHLCNVA LQESRSAVLP VRVPWGLCEL 651 700 ENSTTRP00000014974/1-1386 XX------XX XFTPGAKELF KQGNHLALYR LPSAETMKET SLGRLSCVTK BACU011515/1-1385 QRPRAVPPPA GFTPGAKELF KQGNHLALYR LPSAETMKET SLGRLSCVTK ENSP00000313885/1-1356 AR------LI GFTPGAKELF KQENHLALYR LPSAETMKET SLGRLSCVTK bmy_15339T0/1-820 AR------LI GFTPGAKELF KQGNHLALYR LPSAETMKET SLGRLSCVTK ENSBTAP00000009496/1-1368 AR------LI GFTPGAKELF KQGNHLALYR LPSAETMKET SLGRLSCVTK 701 750 ENSTTRP00000014974/1-1386 RRPPLSHMIS LFIKDTTTCT EQMLSHGTAD VVLEACTDFW DGAXXXXXXX BACU011515/1-1385 RRPPLSHMIS LFIKDTTTST EQMLSHGTAD VVLEACTDFW DGADIYPLSG ENSP00000313885/1-1356 RRPPLSHMIS LFIKDTTTST EQMLSHGTAD VVLEACTDFW DGADIYPLSG bmy_15339T0/1-820 RRPPLSHMIS LFIKDTTTST EQMLSHGTAD VVLEACTDFW DGADIYPLSG ENSBTAP00000009496/1-1368 RRPPLSHMIS LFIKDTTTST EQMLSHGTAD VVLEACTDFW DGADIYPLSG 751 800 ENSTTRP00000014974/1-1386 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU011515/1-1385 SDRKKVLDFY QRACLSGYCS AFAYKPMSCA LSSQLNGKCI ELVQAPGQSS ENSP00000313885/1-1356 SDRKKVLDFY QRACLSGYCS AFAYKPMNCA LSSQLNGKCI ELVQVPGQSS bmy_15339T0/1-820 SDRKKVLDFY QRACLSGYCS AFAYKPMSCA LSSQLNGKCI ELVQAPGQSS ENSBTAP00000009496/1-1368 SDRKKVLDFY QRACLSGYCS AFAYKPMSCA LSSQLNGKCI ELVQAPGQNS 801 850 ENSTTRP00000014974/1-1386 XXXXXXXXXX XXXXXXXXXX XXXXXXGIGE VLEKEDCMQA LSGQIFMGMV BACU011515/1-1385 IFTTCELPST IPIKLSARRG SWSSDEGIGE VLEKEDCMQA LSGQIFMGMV ENSP00000313885/1-1356 IFTMCELPST IPIKQNARRS SWSSDEGIGE VLEKEDCMQA LSGQIFMGMV bmy_15339T0/1-820 IFTTCELPST IPIKLSARRG SWSSDGTVGP V--------- ---------- ENSBTAP00000009496/1-1368 IFTTCELPST IPIKLSARRG SWSSDEGIGE VLEKEDCMQA LSGQIFMGMV 851 900 ENSTTRP00000014974/1-1386 SSQYQARLDI VRLIDGLVNA CIRFVYFSLE DELKSKVFAE KMGLETGWNC BACU011515/1-1385 SSQYQARLDI VRLIDGLVNA CIRFVYFSLE DELKSKVFAE KMGLETGWNC ENSP00000313885/1-1356 SSQYQARLDI VRLIDGLVNA CIRFVYFSLE DELKSKVFAE KMGLETGWNC bmy_15339T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009496/1-1368 SSQYQARLDI VRLIDGLVNA CIRFVYFSLE DELKSKVFAE KMGLETGWNC 901 950 ENSTTRP00000014974/1-1386 HISLTPNGDM PGSEIPPSSP SHTGSLHDDL NQ-------- --VSRDDAEG BACU011515/1-1385 HISLTPNGDM PGSEIPPSSP SHAGSLHDDL NQGEGKGLVW TRVSRDDAEG ENSP00000313885/1-1356 HISLTPNGDM PGSEIPPSSP SHAGSLHDDL NQ-------- --VSRDDAEG bmy_15339T0/1-820 -----PGGRG PG-------- ---------- ---------- ---------- ENSBTAP00000009496/1-1368 HISLTPNGDM PGSEIPPSSP SHAGSLHDDL NQ-------- --ASRDDAEG 951 1000 ENSTTRP00000014974/1-1386 LLLMEEEGHS DLISFQPTDS DLPSFLEDCN RAKLPRGIHQ VRPHLQNIDN BACU011515/1-1385 LLLMEEEGHS DLISFQPTDS DLPSFLEDCN RAKLPRGIHQ VRPHLQNIDN ENSP00000313885/1-1356 LLLMEEEGHS DLISFQPTDS DIPSFLEDSN RAKLPRGIHQ VRPHLQNIDN bmy_15339T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009496/1-1368 LLLMEEEGHS DLISFQPTDS DLPSFLEDCN RAKLPRGIHQ VRPHLQNIDN 1001 1050 ENSTTRP00000014974/1-1386 VPLLVPLFTD CTPE------ ---------- ---TMCEMIK IMQEYGEVTC BACU011515/1-1385 VPLLVPLFTD CTPESEYPGG GYSASPALVR SAATMCEMIK IMQEYGEVTC ENSP00000313885/1-1356 VPLLVPLFTD CTPE------ ---------- ---TMCEMIK IMQEYGEVTC bmy_15339T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009496/1-1368 VPLLVPLFTD CTPE------ ---------- ---TMCEMIK IMQEYGEVTC 1051 1100 ENSTTRP00000014974/1-1386 CLGSSANLRN SCLFLQSDIS IALDPLYPSR CSWETFGYAT STSMAQASDG BACU011515/1-1385 CLGSSANLRN SCLFLQSDIS IALDPLYPSR CSWETFGYAT SISMAQASDG ENSP00000313885/1-1356 CLGSSANLRN SCLFLQSDIS IALDPLYPSR CSWETFGYAT SISMAQASDG bmy_15339T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009496/1-1368 CLGSSANLRN SCLFLQSDVS IALDPLYPSR CSWETFGYAT STSMAQASDG 1101 1150 ENSTTRP00000014974/1-1386 LSPLQLSGQL NSLPCSLTFR QEETISVIRL IEQARHATYG IRKCFLFLLQ BACU011515/1-1385 LSPLQLSGQL NSLPCSLTFR QEETISIIRL IEQARHATYG IRKCFLFLLQ ENSP00000313885/1-1356 LSPLQLSGQL NSLPCSLTFR QEETISIIRL IEQARHATYG IRKCFLFLLQ bmy_15339T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009496/1-1368 LSPLQLSGQL NSLPCSLTFR QEETISIIRL IEQARHATYG IRKCFLFLLQ 1151 1200 ENSTTRP00000014974/1-1386 CQLTLVVIQF LSCLVQLPPI LSTTDILWLS CFCYPLLSIS LLGKPPHSSI BACU011515/1-1385 CQLTLVVIQF LSCLVQLPPI LSTTDILWLS CFCYPLLSIS LLGKPPHSSI ENSP00000313885/1-1356 CQLTLVVIQF LSCLVQLPPL LSTTDILWLS CFCYPLLSIS LLGKPPHSSI bmy_15339T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009496/1-1368 CQLTLVVIQF LSCLVQLPPI LSTTDILWLS CFCYPLLSIS LLGKPPHSSI 1201 1250 ENSTTRP00000014974/1-1386 MSMATGKNLQ SIPKKTQHYF LLCFLLKFSL TISSCLICFG FTLQSFCDSS BACU011515/1-1385 MSMATGKNLQ SIPKKTQHYF LLCFLLKFSL TISSCLICFG FTLQSFCDSS ENSP00000313885/1-1356 MSMATGKNLQ SIPKKTQHYF LLCFLLKFSL TISSCLICFG FTLQSFCDSS bmy_15339T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009496/1-1368 MSMATGKNLQ SIPKKTQHYF LLCFLLKFSL TISSCLICFA FTLQSFCDRS 1251 1300 ENSTTRP00000014974/1-1386 RVRNLTNCSS IMLPSHADTA PAWFDDFANG LLPAQKLAAA LTVLHTGEGL BACU011515/1-1385 RVRNLTNCSS IMLPSQADTA PAWFDDFANG LLLALKLPAA LTVLHT---- ENSP00000313885/1-1356 RDRNLTNCSS VMLPSNDDRA PAWFEDFANG LLSAQKLTAA LIVLHT---- bmy_15339T0/1-820 ---------- ---------- ---------G LPGA------ ---------- ENSBTAP00000009496/1-1368 RARNLTNCSS IMLPSHVDKA PAWFDNFANG LLSAQKLAAA LIVLHT---- 1301 1350 ENSTTRP00000014974/1-1386 PGAGEAPWGP GLWPWKSDTH HTPFSPVFIS ITHVHRTKPL WRKSPLTNLW BACU011515/1-1385 ---------- ---------- ------VFIS ITHVHRTKPL WRKSPLTNLW ENSP00000313885/1-1356 ---------- ---------- ------VFIS ITHVHRTKPL WRKSPLTNLW bmy_15339T0/1-820 ---------- ---------- ---------- ---------- WTRS------ ENSBTAP00000009496/1-1368 ---------- ---------- ------VFIS ITHVHRTKPL WRKSPLTNLW 1351 1400 ENSTTRP00000014974/1-1386 WAVTVPVVLL GQVVQTAVDL QLWTHRDSHV HFGLEDVPLL TWLLGCLSLV BACU011515/1-1385 WAVTVPVVLL GQVVQTAVDL QLWTHRDSHV HFGLEDVPLL TWLLGCLSLV ENSP00000313885/1-1356 WAVTVPVVLL GQVVQTAVDL QLWTHRDSHV HFGLEDVPLL TWLLGCLSLV bmy_15339T0/1-820 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009496/1-1368 WAVTVPVVLL GQVAQTAVDL QLWTHRDSHI HFGLEDVPLL TWLLGCLSLV 1401 1450 ENSTTRP00000014974/1-1386 LVVVTNEIVK LHEIRVRVRY QKRQKLQFET KLGMNSPF BACU011515/1-1385 LVVVTNEIVK LHEIRVRVRY QKRQKLQFET KLGMNSPF ENSP00000313885/1-1356 LVVVTNEIVK LHEIRVRVRY QKRQKLQFET KLGMNSPF bmy_15339T0/1-820 ---------- ---------- ---------- -------- ENSBTAP00000009496/1-1368 LVVVTNEVVK LHEIRVRVRY QKRQKLQFET KLGMNSPF