KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:38 2014 Check: 00 .. Name: ENSP00000325355/1-1202 Len: 1356 Check: 5503 Weight: 1.00 Name: ENSBTAP00000009497/1-1192 Len: 1356 Check: 8758 Weight: 1.00 Name: ENSTTRP00000014991/1-1195 Len: 1356 Check: 3321 Weight: 1.00 Name: bmy_15340T0/1-1283 Len: 1356 Check: 2545 Weight: 1.00 Name: BACU020365/1-1173 Len: 1356 Check: 4496 Weight: 1.00 // 1 50 ENSP00000325355/1-1202 MGREQDLILA VKNGDVTGVQ KLVAKVKATK TKLLGSTKRL NVNYQDADGF ENSBTAP00000009497/1-1192 MGREQDLILA VKNGDVTGVQ KLVAKVKATK TKLLGSTKRL NVNYQDADGF ENSTTRP00000014991/1-1195 MGREQDLILA VKNGDVTGVQ KLVAKVKATK TKLLGSTKRL NVNYQDADGF bmy_15340T0/1-1283 MGREQDLILA VKNGDVTGVQ KLVAKVKATK TKLLGSTKRL NINYQDADGF BACU020365/1-1173 MGREQDLILA VKNGDVTGVQ KLVAKVKATK TKLLGSTKRL NVNYQDADGF 51 100 ENSP00000325355/1-1202 SALHHAALGG SLELIALLLE AQATVDIKDS NGMRPLHYAA WQGRLEPVRL ENSBTAP00000009497/1-1192 SALHHAALGG SLELIALLLE AQATVDIKDS NGMRPLHYAA WQGRLEPVRL ENSTTRP00000014991/1-1195 SALHHAALGG SLELIALLLE AQATVDIKDS NGMRPLHYAA WQGRLEPVRL bmy_15340T0/1-1283 SALHHAALGG SLELIALLLE AQATVDIKDS NGMRPLHYAA WQGRLEPVRL BACU020365/1-1173 SALHHAALGG SLELIALLLE AQATVDIKDS NGMRPLHYAA WQGRLEPVRL 101 150 ENSP00000325355/1-1202 LLRASAAVNA ASLDGQIPLH LAAQYGHYEV SEMLLQHQSN PCLVNKAKKT ENSBTAP00000009497/1-1192 LLRASAAVNA ASLDGQIPLH LAAQYGHYEV SEMLLQHQSN PCLVNKAKKT ENSTTRP00000014991/1-1195 LLRASAAVNA ASLDGQIPLH LAAQYGHYEV SEMLLQHQSN PCLVNKAKKT bmy_15340T0/1-1283 LLRASAAVNA ASLDGQIPLH LAAQYGHYEV SEMLLQHQSN PCLVNKAKKT BACU020365/1-1173 LLRASAAVNA ASLDGQIPLH LAAQYGHYEV SEMLLQHQSN PCLVNKAKKT 151 200 ENSP00000325355/1-1202 PLDLACEFGR LK-------- ---------- ---------- -VAQLLLNSH ENSBTAP00000009497/1-1192 PLDLACEFGR LK-------- ---------- ---------- -VAQLLLNSH ENSTTRP00000014991/1-1195 PLDLACEFGR LK-------- ---------- ---------- -VAQLLLNSH bmy_15340T0/1-1283 PLDLACEFGR LKVGPAVLGV LGSGRLGGSQ EEALPECWLL QVAQLLLNSH BACU020365/1-1173 PLDLACEFGR LK-------- ---------- ---------- -VAQLLLNSH 201 250 ENSP00000325355/1-1202 LCVALLEGEA KDPCDPNYTT PLHLAAKNGH REVI------ ---------- ENSBTAP00000009497/1-1192 LCVALLEGEA KDPCDPNYTT PLHLAAKNGH REVI------ ---------- ENSTTRP00000014991/1-1195 LCVALLEGEA KDPCDPNYTT PLHLAAKNGH REVI------ ---------- bmy_15340T0/1-1283 LCVALLEGEA KDPCDPNYTT PLHLAAKNGH REVIRYPPGP PQHPHPLPVG BACU020365/1-1173 LCVALLEGEA KDPCDPNYTT PLHLAAKNGH REVI------ ---------- 251 300 ENSP00000325355/1-1202 ---------- ---------- ---------- ---------- ------RQLL ENSBTAP00000009497/1-1192 ---------- ---------- ---------- ---------- ------RQLL ENSTTRP00000014991/1-1195 ---------- ---------- ---------- ---------- ------RQLL bmy_15340T0/1-1283 LATSPQCPAL LPSSPSLWIS LPAPSNRLPL LPHPLPSAPV THPPLHRQLL BACU020365/1-1173 ---------- ---------- ---------- ---------- ------RQLL 301 350 ENSP00000325355/1-1202 RAGIEINRQT KTGTALHEAA LYGKTEVVRL LLEGGVDVNI RNTYNQTALD ENSBTAP00000009497/1-1192 RAGIEINRQT KAGTALHEAA LYGKTEVVRL LLEGGVDVNI RNTYNQTALD ENSTTRP00000014991/1-1195 RAGIEINRQT KTGTALHEAA LYGKTEVVRL LLEGGVDVNI RNTYNQTALD bmy_15340T0/1-1283 RAGIEINRQT KTGTALHEAA LYGKTEVVRL LLE------- ---------- BACU020365/1-1173 RAGIEINRQT KTGTALHEAA LYGKTEVVRL LLEGGVDVNI RNTYNQTALD 351 400 ENSP00000325355/1-1202 IVNQFTTSQA SREIKQLLRE ASGILKVRAL KDFWNLHDPT ALNVRAGDVI ENSBTAP00000009497/1-1192 IVNQFTTSQA SREIKQLLRE ASGILKVRAL KDFWNLHDPT ALNVRAGDVI ENSTTRP00000014991/1-1195 IVNQFTTSQA SREIKQLLRE ASGILKVRAL KDFWNLHDPT ALNVRAGDVI bmy_15340T0/1-1283 ---------- ---------- ---------- ---------- ---------- BACU020365/1-1173 IVNQFTTSQA SREIKQLLRE ASGILKVRAL KDFWNLHDPT ALNVRAGDVI 401 450 ENSP00000325355/1-1202 TVLEQHPDGR WKGHIHESQR GTDRIGYFPP GIVEVVSKRV GIPAARLPSA ENSBTAP00000009497/1-1192 TVLEQHPDGR WKGHIHESQR GTDRVGYFPP GIVEVVSKRV GVLAPRLPSV ENSTTRP00000014991/1-1195 TVLEQHPDGR WKGHIHESQR GTDRVGYFPP GIVEVVSKRV GVLAPRLPCV bmy_15340T0/1-1283 -VLEQHPDGR WKGHIHESQR GTDRVGYFPP GIVEVVSKRV GVLAPRLPSA BACU020365/1-1173 TVLEQHPDGR WKGHIHESQR GTDRVGYFPP GIVEVVSKRV GVLAPRLPSA 451 500 ENSP00000325355/1-1202 PTPLRPGFSR TPQPPAEEPP HPLTYSQLPR VGLSPDSPAG DRNSVGSEGS ENSBTAP00000009497/1-1192 PTPLRPGFSR MPQPPAEEPL HPLTYGQLPR VGLSPDSPAG DRNSVGSEGS ENSTTRP00000014991/1-1195 STTLRPGLSR TPQPPADDSL HPLTYGQLPR VGLSPDSPAG DRNSVGSEGS bmy_15340T0/1-1283 STTLRPGLSR TPQPPADDPL HPLTYGQLPR VGLSPDSPAG DRNSVGSEGS BACU020365/1-1173 STTLRPGLSR TPQPPADDPL HPLTYGQLPR VGLSPDSPAG DRNSVGSEGS 501 550 ENSP00000325355/1-1202 VGSIRSAGSG QSSEGTNGHG PGLLIENAQ- ---------- ---------- ENSBTAP00000009497/1-1192 VGSIRSAGSG QSSEGTNGHS TGLLIENAQ- ---------- ---------- ENSTTRP00000014991/1-1195 VGSIRSAGSG QSSEGTNGHS TGLLIENAQ- ---------- ---------- bmy_15340T0/1-1283 VGSIRSAGSG QSSEGTNGHS TGLLIENAQV GGRGGALVGT RAGPPTPTAS BACU020365/1-1173 VGSIRSAGSG QSSEGTNGHS TGLLIENAQ- ---------- ---------- 551 600 ENSP00000325355/1-1202 ---------- --PLPSAGED QVLPGLHPPS LADNLSHRPL ANCRSGEQIF ENSBTAP00000009497/1-1192 ---------- --PLPSAGED QVPPGLQPAS LADNPNHRPL ANYRSGEQHF ENSTTRP00000014991/1-1195 ---------- --XXXXXXXX XXXXXXXXXX XXXNPNHRPL ANYRSGEQLF bmy_15340T0/1-1283 SPSESQLLPC LQPLPSAGED QVLPGLHPPS LADNPNHRPL ANYRSGELLF BACU020365/1-1173 ---------- --VGGAGGRP TLIPFL--SF LEDNPNHRPL ANYRSGELLF 601 650 ENSP00000325355/1-1202 TQDVRPEQLL EGKDAQAIHN WLSEFQLEGY TAHFLQAGYD VPTISRMTPE ENSBTAP00000009497/1-1192 TQDVRPEQLL EGKDAQAIHN WLSEFQLEGY TAHFLQAGYD VPTISRMTPE ENSTTRP00000014991/1-1195 TQDVRPEQLL EGKDAQAIHN WLSEFQLEGY TAHFLQAGYD VPTISRMTPE bmy_15340T0/1-1283 TQDVRPEQLL EGKDAQAIHN WLSEFQLEGY TAHFLQAGYD VPTISRMTPE BACU020365/1-1173 TQDVRPEQLL EGKDAQAIHN WLSEFQLEGY TAHFLQAGYD VPTLSRMTPE 651 700 ENSP00000325355/1-1202 DLTAIGVTKP GHRKKIASEI AQLSIAEWLP SYIP------ ---------- ENSBTAP00000009497/1-1192 DLTAIGVTKP GHRKKIASEI AQLSIAEWLP NYIP------ ---------- ENSTTRP00000014991/1-1195 DLTAIGVTKP GHRKKIASEI AQLSIAEWLP NYIP------ ---------- bmy_15340T0/1-1283 DLTAIGVTKP GHRKKIASEI AQLSIAEWLP NYIPWATGTG SHLQLRLCSA BACU020365/1-1173 DLTAIGVTKP GHRKKIASEI AQLSIAEWLP NYIP------ ---------- 701 750 ENSP00000325355/1-1202 ---------- --TDLLEWLC ALGLPQYHKQ LVSSGYDSMG LVADLTWEEL ENSBTAP00000009497/1-1192 ---------- --ADLLEWLC ALGLPQYHKQ LVSSGYDSMG LVADLTWEEL ENSTTRP00000014991/1-1195 ---------- --ADLLEWLC ALGLPQYHKQ LVSSGYDSMG LVADLTWEEL bmy_15340T0/1-1283 FLAWGPTVLL LQADLLEWLC ALGLPQYHKQ LVSSGYDSMG LVADLTWEEL BACU020365/1-1173 ---------- --ADLLEWLC ALGLPQYHKQ LVSSGYDSMG LVADLTWEEL 751 800 ENSP00000325355/1-1202 QEIGVNKLGH QKKLMLGVKR LAELRRGLLQ GEALSEGGRR LAKGPELMAI ENSBTAP00000009497/1-1192 QEIGVNKLGH QKKLMLGVKR LAELRRGLLQ GESLGEGGRR LARGPELMAI ENSTTRP00000014991/1-1195 QEIGVNKLGH QKKLMLGVKR LAELRRGLLQ GEAPGDGGRR LARAPELMAI bmy_15340T0/1-1283 QEIGVNKLGH QKKLMLGVKR LAELRRGLLQ GEAPGDGGRR LARGPELMAI BACU020365/1-1173 QEIGVNKLGH QKKLMLGVKR LAELRRGLLQ GEAPGDGGRR LARGPELMAI 801 850 ENSP00000325355/1-1202 EGLENGEGPA TAGPRLLTFQ GSELSPELQA AMAGGGPEPL PLPPARSPSQ ENSBTAP00000009497/1-1192 EGLENGDGPP AASPRLLTFQ GSELSPELQA AMAGGGPEPL PLPPARSPSQ ENSTTRP00000014991/1-1195 EGLENGDGPA VAGPRLLTFQ GSELSPELQA AMAGGGPEPL PLPPARSPSQ bmy_15340T0/1-1283 EGLENGDGPA VAGPRLLTFQ GSELSSELQA AMAGGGPEPL PLPPARSPSQ BACU020365/1-1173 EGLENGDGPA VAGPRLLTFQ GSELSPELQA AMAGGGPQPL PLPPARSPSQ 851 900 ENSP00000325355/1-1202 ESIGARSRGS GHSQEQPAPQ PSGGDPSPPQ ERNLPEGTER PPKLCSSLPG ENSBTAP00000009497/1-1192 ESIGARSRGS GHSQEQPAPQ PSGGDPNTPQ ERNLPEGTER PPKLCSPLPS ENSTTRP00000014991/1-1195 ESIGARSRGS GHSQEQPASQ PSGGDPNTPQ ERNLPEGTER PPKLCSPLPG bmy_15340T0/1-1283 ESIGARSQGS GHSQEQPASQ PSGGDPSTPQ ERNLPEGTER PPKLCSPLPG BACU020365/1-1173 ESIGARSRGS GHSQEQPASQ PSGGDPNTPQ ERNLPEGTER PPKLCSPLPG 901 950 ENSP00000325355/1-1202 QGPPPYVFMY PQGSPSSPAP GPPPGAPWAF SYLAGPPATP PDPPRPKRRS ENSBTAP00000009497/1-1192 QGPPPYVFMY PQASPSSPAP GPPPGAPRAF SYLAGPPATP PDPPRPKRRS ENSTTRP00000014991/1-1195 QGAPPYVFMY PQGSPSSPAP GPPPGAPRAF SYLAGAPATP PDPPRPKRRS bmy_15340T0/1-1283 QGAPPYVFMY PQGSPSSPAP GPPPGAPRAF SYLAGPLATP PDPPRPKRRS BACU020365/1-1173 QGAPPYVFMY PQGSPSSPAP GPPPGAPRAF SYLAGPLATP PDPPRPKRRS 951 1000 ENSP00000325355/1-1202 HSLSRPGPTE GDAEGEAEGP VGSTLGSYAT LTRRPGRSAL VRTSPSVTPT ENSBTAP00000009497/1-1192 HSLSRPGPAE GEADGEAEGP VDSALGSYAT LTRRPGRSTL ARTSPS--PT ENSTTRP00000014991/1-1195 HSLSRPSPDD GEVEGESERT VNSALGSYAT LTRRPGCTTF VRISP---PT bmy_15340T0/1-1283 HSLSRPSPAE GEAEGEAEGP VDSALGSYAT LTRRPGRSAL ARTSPS--PT BACU020365/1-1173 HSLSRPSPAE GEAEGEAEGP VDSALGSYAT LTRRPGRSAL ARTSPS--PT 1001 1050 ENSP00000325355/1-1202 PARGTPRSQS FALRARRKGP PPPPPKRLSS VSGPSPE-PP PLDESPGPKE ENSBTAP00000009497/1-1192 PTRGAPRSQS FALRARRKGP PPPPPKRLSS VSGSTPE-PP PPDGSPGPKE ENSTTRP00000014991/1-1195 RARRAPHNPS FA-RARGKGP PPPPPRDFRV VSGRTLK-PP PPDGKPAPRR bmy_15340T0/1-1283 PTRGAPRSQS FALRARRKGP PPPPPKRLSS VSGPTLEPPP PPDGSPAPKE BACU020365/1-1173 PTRG------ ---------- --------XS VSGPTLEPPP PPDGSPAPKE 1051 1100 ENSP00000325355/1-1202 GATGPRRRTL SEPAGPSEPP GPPAPAGPAS DTEEEEPGPE GTPPSRGSSG ENSBTAP00000009497/1-1192 GAAGPRRRTL SEPTGPSEPS GPPTPAGAAS DTEEEDPGPE GTPPSRGSSG ENSTTRP00000014991/1-1195 GPPGPRKRTV SEPTGPSEPT NLPTPAGAAS DTEEEDPGPE GTPPSRGSSG bmy_15340T0/1-1283 GAPGPRRRTL SEPTGPSEPP GLPAPAGAAS DTEEEDPGHE GTPPSRGSSG BACU020365/1-1173 GALGPRRRTL SEPTGPSEPP GLPAPAGTAS DTEEEDPGPE GTPPSRGSSG 1101 1150 ENSP00000325355/1-1202 EGLPFAEEGN LTIKQRPKPA GPPPRETPVP PGLDFNLTES DTVKRRPKCR ENSBTAP00000009497/1-1192 EGLPFAEEGN LTIKQRPKPA GPPPRETPVP AGLDFNLTES DTVKRRPKCR ENSTTRP00000014991/1-1195 -GLPFAEEGN LTIKQRPKPA GPPPRETPVP AGLDFNLTES DTVKRRPKCR bmy_15340T0/1-1283 EGLPFAEEGN LTIKQRPKPA GPPPRETPVP AGLDFNLTES DTVKRRPKCR BACU020365/1-1173 EGLPFAEEGN LTIKQRPKPA GPPPRETPVP AGLDFNLTES DTVKRRPKCR 1151 1200 ENSP00000325355/1-1202 EREPLQTALL AFGVASATPG PAAPLPSPTP GESPPAS-SL PQPEPSSLPA ENSBTAP00000009497/1-1192 EREPLQTALL AFGVAGTTPN P-APQPSQTP SEPPAASPSP PQPDPSSLPT ENSTTRP00000014991/1-1195 EREPLQTALL AFGVAGATPG PPAALSPQTP GESPSASASP PRPDPSSLPN bmy_15340T0/1-1283 EREPLQTALL AFGVAGATPG PPTPLSSQTP GESPSASASP PRPDPSSLPN BACU020365/1-1173 ERGPLQTALL AFGAAGATPG PPTPLSSQTP GESPSASASP PRPDPSGLPN 1201 1250 ENSP00000325355/1-1202 QGVPTPLAPS PAMQPPVPPC PGPGLESSAA SRWNGETEPP AAPAALLKVP ENSBTAP00000009497/1-1192 PGAPASLSPS SPAQP----- LGPALEN--- NRRPGETEPP AAPATLIKVP ENSTTRP00000014991/1-1195 PGAPAPLSPS PPTQPPMAPC PGPALEN--- SRRPGEMEPP APPAALLKVP bmy_15340T0/1-1283 PGAPAPLSPS PPTQPPVAPC PGPGLEN--- SRRPGEMEPP APPAALLKVP BACU020365/1-1173 PGAPAPLSPS PPTQPPAAPC PGPALEH--- SRRPGEMEPP APPAALLKVP 1251 1300 ENSP00000325355/1-1202 GAGTAPKPVS VACTQLAFSG PKLAPRLGPR PVPPPRPEST GTVGPGQAQQ ENSBTAP00000009497/1-1192 GAGTAPKPVS VACTQLAFSG PKLAPRLGPR PVPPPRPEST GAAGPGRAQQ ENSTTRP00000014991/1-1195 GAGTAPKPVS VACTQLAFSG PKLAPRLGPR PVPPPRPENT GATGPGRAQQ bmy_15340T0/1-1283 GAGTAPKPVS VACTQLAFSG PKLAPRLGPR PVPPPRPENT GATGPGRAQQ BACU020365/1-1173 GAGTAPKPVS VACTQLAFSG PKLAPRLGPR PVPPPRPENT GATGPGRAQQ 1301 1350 ENSP00000325355/1-1202 RLEQTSSSLA AALRAAEKSI GTKEQEGTPS ASTKHILDDI STMFDALADQ ENSBTAP00000009497/1-1192 RLEQTSSSLA AALRAAEKSI GAEEREGAPG ASTKHILDDI STMFDALADQ ENSTTRP00000014991/1-1195 RLEQTSSSLA AALRAAEKSI GAEEREGPPG TSTKHILDDI STMFDALANQ bmy_15340T0/1-1283 RLEQTSSSLA AALRAAEKSI GAEEREGPPG TSTKHILDDI STMFDALANQ BACU020365/1-1173 RLEQTSSSLA AALRAAEKSI GAEEREGPPG TSTKHILDDI STMFDALANQ 1351 1400 ENSP00000325355/1-1202 LDAMLD ENSBTAP00000009497/1-1192 LDAMLD ENSTTRP00000014991/1-1195 LDAMLD bmy_15340T0/1-1283 LDAMLD BACU020365/1-1173 LDAMLD