KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:40 2014 Check: 00 .. Name: bmy_02535T0/1-357 Len: 555 Check: 9731 Weight: 1.00 Name: ENSP00000334148/1-544 Len: 555 Check: 8645 Weight: 1.00 Name: ENSBTAP00000009513/1-552 Len: 555 Check: 149 Weight: 1.00 Name: BACU020386/1-546 Len: 555 Check: 6364 Weight: 1.00 Name: ENSTTRP00000015139/1-543 Len: 555 Check: 6859 Weight: 1.00 // 1 50 bmy_02535T0/1-357 ------MGGL VSVECSLVD- ---------- ---------- -------VRS ENSP00000334148/1-544 -----MTART LSLMASLVAY DDSDSEAETE HAGSFNATGQ QKDTSGVARP ENSBTAP00000009513/1-552 KFALEGQRET VSLMASLVAY EDSDSEAETE PAGSFHPVGQ MEDTSAMLRP BACU020386/1-546 ---------T VSSMASLVAY DDSDSEAETE PAGSFNPAGQ MKDASDAVRP ENSTTRP00000015139/1-543 -----RTRRT VSSMASLVAY DDSDSEPETE PGGSFNPAGQ MKDASDAIRP 51 100 bmy_02535T0/1-357 PGPG------ ---PSGLHPL ICGGVA---- ---------- ---------- ENSP00000334148/1-544 PGQDFASGTL DVPKAGAQPT KHGSCEDPGG YRLPLAQLGR SDWGSCPSQR ENSBTAP00000009513/1-552 PEQDFGSRVL DATGGWAPSL VCGSHDDPTT CRLPLARLWS QDPGSCPSQR BACU020386/1-546 PGRDFASEVL DAKDGGALPA KHGSCEDAAG CRLPLARLWS SDSGSCPNQR ENSTTRP00000015139/1-543 PGRDFASEVL DA-RTGAQPT KHGSCEDAAS CRLPLARLWS SDSGSCPNQR 101 150 bmy_02535T0/1-357 ---------- ---------- ---------- ---------- ---------- ENSP00000334148/1-544 LQWPGKEPQV TFPIKEPSCS SLWTSHVPAS HMPLAAARFK QVKLS---RN ENSBTAP00000009513/1-552 LRWPRPEPEA TLPASPPARP SLWTSQAPAG HVPLAAARSK QVRVCWEPSG BACU020386/1-546 LQWPRTEPEV TFPTSQPVRP SLWTSHAPAG HVPLAAACLK QVKLSWGTSG ENSTTRP00000015139/1-543 LQWPRTEPEV TFPTSQPARP SLWTSHAPAG HVPLAAARLK QVKLS---GN 151 200 bmy_02535T0/1-357 -PEPCACGAL GPPSGWQGGK DRPRPNQR-- ---------- ---------- ENSP00000334148/1-544 FPKSSFHAQS ESETVGKNGS SFQKKKCEDC VVPYTPRRLR QRQALSTETG ENSBTAP00000009513/1-552 SPKPSLDART GSEGPGKGSS SLQRKRREDC VVPYIPKRLR PLQALSTETD BACU020386/1-546 SPEPSFCART GSEAPGENGS SLPRQRCAHG VVPYTPKRLR RWQALSTETG ENSTTRP00000015139/1-543 FPEPSFCART GSETPGKNGS SLQRQWCEDC VVPYTPKRLR QLQALSTETG 201 250 bmy_02535T0/1-357 ------PEQK RAG------- ---------- ---------- -----IAHLL ENSP00000334148/1-544 KGKDVEPQGP PAGRAPAPLY VGPGVSEFIQ PYLNSHYKET TVPRKVLFHL ENSBTAP00000009513/1-552 SGKDTEARGP LAGRVPAPLC VAPEVSEFIQ PYLDSQYKET KIPKTVLFHL BACU020386/1-546 KSKDMEPPGP CARRAPAPLC VAPEVSEFIQ PYLDSQYQET EIPRKVLFRM ENSTTRP00000015139/1-543 KSKDMEPQGP CAGRAPAPLC VAPQVSEFIQ PYLDCQYKET KIPRKVLFHL 251 300 bmy_02535T0/1-357 LGSPG----- ---------- -VFTNDVEPQ -QVWNAVDSG SCLQTYSLHG ENSP00000334148/1-544 RGHRGPVNTI QWCPVLSKSH MLLSTSMDKT FKVWNAVDSG HCLQTYSLHT ENSBTAP00000009513/1-552 RGHRGPVNSV QWCPVSARSH MLLSTSMDKT FKVWNAVDSG SCLQTYSLHS BACU020386/1-546 RGHRGPVNNV QWCPVSSRSH VLLSTSMDKT FKVWNAVDSG SCLQTYCLHS ENSTTRP00000015139/1-543 RGHRGPVNNI QWCPVSSKSH MLLSTSMDKT FKVWNAVDSG SCLQTYSLHS 301 350 bmy_02535T0/1-357 EAVRAARWSP CGQRILSGGF DFALHLTDLQ TGTQLFSGQS DFRITTLKFH ENSP00000334148/1-544 EAVRAARWAP CGRRILSGGF DFALHLTDLE TGTQLFSGRS DFRITTLKFH ENSBTAP00000009513/1-552 EAVRAARWSP CGRRILSGGF DFALHLTDLE TGTQLFSSRS DFRITALRFH BACU020386/1-546 EAVRAALWSP CGQRVLSGGF DFALHLTDLE TGTQLFSGQS DFRITTLKFH ENSTTRP00000015139/1-543 EAVRAARWSP CGQRILSGGF DSALHLTDLE TGTQLFSGQS DFRITTLKFH 351 400 bmy_02535T0/1-357 PRDHNVFVCG GFSSEMKAWD IRTSKVVRSY KATIQQTLDI LFLREGSEFL ENSP00000334148/1-544 PKDHNIFLCG GFSSEMKAWD IRTGKVMRSY KATIQQTLDI LFLREGSEFL ENSBTAP00000009513/1-552 PRDHSVFVCG GFSSEMKAWD IRTSKVVRSY KATIQQTLDI LFLREGSEFL BACU020386/1-546 PRDHNVFVCG GFSSEMKAWD IRTSKVVRSY KATIQQTLDI LFLREGSEFL ENSTTRP00000015139/1-543 PRDHNVFVCG GFSSEMKAWD VRTSKVVRSY KATIQQTLDI LFLREGSEFL 401 450 bmy_02535T0/1-357 SSTDASSRDS ADRTIIAWDF RSSAKISNQI FH---ERYTC PSLALHPREP ENSP00000334148/1-544 SSTDASTRDS ADRTIIAWDF RTSAKISNQI FH---ERFTC PSLALHPREP ENSBTAP00000009513/1-552 SSTDASSRDS ADRTIIAWDF QSSAKISNQI FH---ERYTC PSLTLHPREP BACU020386/1-546 SSTDASSRDS ADRTIIAWDF RSSAKISNQI FHVRNPRYTC PSLTLHPREP ENSTTRP00000015139/1-543 SSTDASSRDS ADRTIIAWDF RSSAKISNQI FH---ERYTC PSLTLHPREP 451 500 bmy_02535T0/1-357 VFLAQTNGNY LALFSAVWPY RMSRRRRYEG HKVEGYSVGC ECSPDGDLLL ENSP00000334148/1-544 VFLAQTNGNY LALFSTVWPY RMSRRRRYEG HKVEGYSVGC ECSPGGDLLV ENSBTAP00000009513/1-552 VFLAQTNGNY LALFSAVWPY RMSRRRRYEG HKVEGYSVGC DCSPDGDLLL BACU020386/1-546 VFLAQTNGNY LALFSAVWPY RMSRRRRYEG HKVEGYSVGC ECSPDGDLLL ENSTTRP00000015139/1-543 VFLAQTNGNY LALFSAVWPY RMSRRRRYEG HKVEGYSVGC ECSPDGDLLL 501 550 bmy_02535T0/1-357 TGSADGRVLV YSFRTASRAR TLHGHTQACV GTTFHPVLPS VLATCSWEGD ENSP00000334148/1-544 TGSADGRVLM YSFRTASRAC TLQGHTQACV GTTYHPVLPS VLATCSWGGD ENSBTAP00000009513/1-552 TGSADGRTLV YSFRTASRAR TLHGHTQACV GATFHPVLPS MLATCSWEGD BACU020386/1-546 TGSADGRVLV YSFRTASRAR TLHGHTQACV GTTFHPVLPS VLATCSWEGD ENSTTRP00000015139/1-543 TGSADGRVLV YSFRTASRAR TLHGHTQACV GTTFHPVLPS VLATCSWEGD 551 600 bmy_02535T0/1-357 VKIWH ENSP00000334148/1-544 MKIWH ENSBTAP00000009513/1-552 VKIWH BACU020386/1-546 VKIWH ENSTTRP00000015139/1-543 VKIWH