KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:41 2014 Check: 00 .. Name: ENSP00000287598/1-1050 Len: 1064 Check: 8009 Weight: 1.00 Name: ENSBTAP00000009521/1-1062 Len: 1064 Check: 2198 Weight: 1.00 Name: BACU008539/1-839 Len: 1064 Check: 2096 Weight: 1.00 Name: bmy_00633T0/1-1043 Len: 1064 Check: 9894 Weight: 1.00 Name: ENSTTRP00000000034/1-1051 Len: 1064 Check: 3886 Weight: 1.00 // 1 50 ENSP00000287598/1-1050 MAAVKKEGGA LSEAMSLEGD EWELSKENVQ PLRQGRIMST LQGALA-QES ENSBTAP00000009521/1-1062 MAAMQKERGA PSDIMSLEGD EWELSKENVQ PLRQGRIMST LQGALAQQES BACU008539/1-839 ---MQKERGA PSEVMSLEGD EWELSKENVQ PLRQGRIMST LQGALAQQES bmy_00633T0/1-1043 ---------- ----MSLEGD EWELSKENVQ PLRQGRIMST LQGALAQQES ENSTTRP00000000034/1-1051 MAAMQKERGA PSEVMSLEGD EWELSKENVQ PLRQGRIMST LQGALAQQES 51 100 ENSP00000287598/1-1050 ACNNTLQQQK RAFEYEIRFY TGNDPLDVWD RYISWTEQNY PQGGKESNMS ENSBTAP00000009521/1-1062 ACNTTLQQQK RAFESEIRFY AGNDPLDVWD RYINWTEQNY PQGGKESNMS BACU008539/1-839 ACNTTLQQQK RAFESEIRFY AGNDPLDVWD RYINWTEQNY PQGGKESNMS bmy_00633T0/1-1043 ACNTTLQQQK RAFESEIRFY AGNDPLDVWD RYINWTEQNY PQGGKESNMS ENSTTRP00000000034/1-1051 ACNTTLQQQK REFESEIRFY AGNDPLDVWD RYINWTEQNY PQGGKESNMS 101 150 ENSP00000287598/1-1050 TLLERAVEAL QGEKRYYSDP RFLNLWLKLG RLCNEPLDMY SYLHNQGIGV ENSBTAP00000009521/1-1062 TLLERAVEAL QGEKRYYNDP RFLSLWLKLG HLCNEPLDMY SYLHNQGIGI BACU008539/1-839 TLLERAVEAL QGEKRYYNDP RFLSLWLKLG HLCNEPLDMY SYLHNQGIGI bmy_00633T0/1-1043 TLLERAVEAL QGEKRYYNDP RFLSLWLKLG HLCNEPLDMY SYLHNQGIGI ENSTTRP00000000034/1-1051 TLLERAVEAL QGEKRYYNDP RFLSLWLKLG HLCNEPLDMY SYLHNQGIGI 151 200 ENSP00000287598/1-1050 SLAQFYISWA EEYEARENFR KADAIFQEGI QQKAEPLERL QSQHRQFQAR ENSBTAP00000009521/1-1062 SLAQFYISWA EEYEARENFK KADLIFQEGI EQKAEPLERL QSQHRQFQAR BACU008539/1-839 SLAQFYISWA EEYEARENFK KADVIFQEGI QQKAEPLEKL QSQHRQFQAR bmy_00633T0/1-1043 SLAQFYISWA EEYEARENFK KADVIFQEGI QQKAEPLEKL QSQHRQFQAR ENSTTRP00000000034/1-1051 SLAQFYISWA EEYEARENFK RADVIFQEGI QQKAEPLERL QSQHRQFQAR 201 250 ENSP00000287598/1-1050 VSRQTLLALE KEEEEEVFES SVPQRSTLAE LKSKGKKTAR APIIRVGGAL ENSBTAP00000009521/1-1062 VSRQTLLALE KEEEEEVVGS SVPQRSTLAE LKSKGKKTAR APISRVGGAL BACU008539/1-839 VSRQTLLALE KEEEEEVFGS SVPQRSTLAE LKSKGKKTAR APISRVGGAL bmy_00633T0/1-1043 VSRQTLLALE KEEEEEVFGS SVPQRSTLAE LKSKGKKTAR APISRVGGAL ENSTTRP00000000034/1-1051 VSRQTLLALE KEEEEEVFGS SEPQRSTLAE LKSKGKKTAR APISRVGGAL 251 300 ENSP00000287598/1-1050 KAPSQNRGLQ NPFPQQMQNN SRITVFDENA DEASTAELSK PTVQPWIAPP ENSBTAP00000009521/1-1062 KAPSQNRGLQ NPVPQQMQSN TRIIVFDENT DEASRAEPSK PTVQPWIAPP BACU008539/1-839 KAPRQNRGLQ NPVPQQMQSN SRITVFDENA DEPSRAESSR PTGQPWIAPP bmy_00633T0/1-1043 KAPRQNRGLQ NPVPQQMQSN SRITVFDENA DEPSRAESSR PTGQPWIAPP ENSTTRP00000000034/1-1051 KAPRHNRGLQ NPVLQQMQSN SRITVFDENA DEPSRAESSR PTGQPWIAPP 301 350 ENSP00000287598/1-1050 MPRAKENELQ AGPWNTGRSL EHRPRGNTAS LIAVPAVLPS FTPYVEETAR ENSBTAP00000009521/1-1062 VSRGKENELQ AGPWNTGRPL EYRPRGNTAS MTAVPSMLPS FTPYVEETAQ BACU008539/1-839 VSRAKENELQ AGPWNTGRPL EYRPRGNTAS MTAIPSMLPS FTPYVEETAQ bmy_00633T0/1-1043 VSRAKENELQ AGPWNTGRPL EYRPRGNTAS MTAVPSVLPS FTPYVEETAQ ENSTTRP00000000034/1-1051 VSRAKENELQ AGPWNTGRPL EYRPRGNAAS MTAVPPVLPS FTPYVEETAQ 351 400 ENSP00000287598/1-1050 QPVMTPCKIE PSINHILSTR KPGKEEGDPL QRVQSHQQAS EEKKEKMMYC ENSBTAP00000009521/1-1062 QPVMTPCKIE PSINHILSTR KPGKEEGDLL QRVQSLQQES -EKKEKMMYC BACU008539/1-839 QPVMTPCKIE PSINHILSTR KPGKEEGDLL QRVQSLQQES EEKKEKMMYC bmy_00633T0/1-1043 QPVMTPCKIE PSINHILSTR KPGKEEGDLL QRVQSLQQES EEKKEKMMYC ENSTTRP00000000034/1-1051 QPVMTPCKIE PSINHILSTR KPGKEEGDLL QRVQSLQQES EEKKEKMMYC 401 450 ENSP00000287598/1-1050 KEKIYAGVGE FSFEEIRAEV FRKKLKEQRE AELLTSAEKR AEMQKQIEEM ENSBTAP00000009521/1-1062 KEKIYAGVGE FSFEEIRAEV FRKKLKERRE AELLTSAEKR AEMQKQIEEM BACU008539/1-839 KEKIYAGVGE FSFEEIRAEV FRKKLKEQRE AELLTSAEKR AEMQKQIEEM bmy_00633T0/1-1043 KEKIYAGVGE FSFEEIRAEV FRKKLKEQRE AELLTSAEKR AEMQKQIEEM ENSTTRP00000000034/1-1051 KEKIYAGVGE FSFEEIRAEV FRKKLKERRE AELLTSAEKR AEMQKQIEEM 451 500 ENSP00000287598/1-1050 EKKLKEIQTT QQERTGDQQE ETMPTKETTK LQIASESQKI PGMTLSSSVC ENSBTAP00000009521/1-1062 EKKLKEIQTT QQERANEQQE EKMPTKETAE LPIASESQEI SGMALSNFVC BACU008539/1-839 EKKLKEIQTT QQERASDQ-- ---------- ---------- ---------- bmy_00633T0/1-1043 EKKLKEIQTT QQERASDQQE EKMSTKETAE LRIVSESQEI PGMALCNSVC ENSTTRP00000000034/1-1051 EKKLKEIQTT QQERASDQQE EKMSTKETAE LRIVSESQEI PGMALCNSVF 501 550 ENSP00000287598/1-1050 QVNCCARETS LAENIWQEQP HSKGPSVPFS IFDEFLLSEK KNKSPPADPP ENSBTAP00000009521/1-1062 PVNSCARETS LAENVWQEQP HSKSSSVPFS IFDESLLSEK KPVSPSAAPS BACU008539/1-839 ---------- ---------- ---------- ---------- ---------- bmy_00633T0/1-1043 PVNSCARETS LAENIWQEQP HSKSSSVPFS IFDEFLLSEK KTISPSADPP ENSTTRP00000000034/1-1051 PVNSCARETS LAENIWQEQP HSKSSSVPFS IFDEFLLSEK KTISPSADPP 551 600 ENSP00000287598/1-1050 RVLAQRRPLA VLKTSESITS NEDVSPDVCD EFTGIEPLSE DAIITGFRNV ENSBTAP00000009521/1-1062 RVLAQRRPLA ILKTSESITS NEDVSPDVCD EFTGIEPLSE DAIITGFRNV BACU008539/1-839 ---------- ---------- ---------D EFTGIEPLSE DAIITGFRNV bmy_00633T0/1-1043 RVLAQRRPLA ILKTSESITS NEDVSPDVCD EFTGIEPLSE DAIITGFRNV ENSTTRP00000000034/1-1051 RVLAQRMPLA VLKTS-SITS NDDVSPDVCD EFTGIEPLSE DAIITGFRNV 601 650 ENSP00000287598/1-1050 TICPNPEDTC DFARAARFVS TPFHEIMSLK DLPSDPERLL PEEDLDVKTS ENSBTAP00000009521/1-1062 TICPNPEDTC DFARAARFAS TPFHEIISLK DLPSDPERLL QEEDLDMKTS BACU008539/1-839 TICPNPEDTC DFARAARFAS TPFHEVISLK DLPSDPERLL QEEDLDVKTS bmy_00633T0/1-1043 TICPNPEDTC DFARAARFAS TPFHEVISLK DLPSDPERLL QEEDLDVKTS ENSTTRP00000000034/1-1051 TICPNPEDTC DFARAARFAS TPFHEIISLK DLPSDPERLL QEEDLDVKTS 651 700 ENSP00000287598/1-1050 EDQQTACGTI YSQTLSIKKL SPIIEDSREA THSSGFSGSS ASVASTSSIK ENSBTAP00000009521/1-1062 EDQQTACGTI YNPPLSIKKL SPIIEDSREA THSSGFSGSS ASVTSTSSIK BACU008539/1-839 EDQQTACGTI YNPTLSIKKL SPIIEDSGEA THSSGFSGSS ASVTSTSSIK bmy_00633T0/1-1043 EDQQTACGTI YNPTLSIKKL SPIIEDSGEA THSSGFSGSS ASVTSTSSIK ENSTTRP00000000034/1-1051 EDQQTACGTI YNPTLSIKKL SPIIEDSGEA THSSGFSGSS ASVTSTSSIK 701 750 ENSP00000287598/1-1050 CLQIPEKLEL TNETSENPTQ SPWCSQYRRQ LLKSLPELSA SAELCIEDRP ENSBTAP00000009521/1-1062 SLQIPEKLEL TSDTADSPTQ SPWCPQYRRQ LVKSLPELSV STEFFVEDRP BACU008539/1-839 CLQIPEKLEL TSETADSPTQ LPWCSQYRRQ LLKSLPQLST STEFFVEDRP bmy_00633T0/1-1043 CLQIPEKLEL TSETADSPTQ SPWCSQYRRQ LLKSLPELST STEFFVEDRP ENSTTRP00000000034/1-1051 CLQIPEKLEL TSETADSPTQ SPWCSQYRRQ LLKSLPELST STEFFVEDKP 751 800 ENSP00000287598/1-1050 MPKLEIEKEI ELGNEDYCIK REYLICEDYK -LFWVAPRNS AELTVIKVSS ENSBTAP00000009521/1-1062 MPSLEIEKEI ELDNEEYCIR QEYLVCEDYK -LFWVTPRNT AELTIIKVSS BACU008539/1-839 MPNLEIEKEI ELDQ------ ----LCSFFH GLFLLSPSLT SGL------- bmy_00633T0/1-1043 MPNLEIEKEI ELDNEDYCIK QQYLICEDYK -LFWVTPRNS AELTIIKVGL ENSTTRP00000000034/1-1051 MPNLEIEKEI ELDNEDYCIK QQYLICEDYK -LFWVTPRNS AELTIIKVSS 801 850 ENSP00000287598/1-1050 QPVPWDFYIN LKLKERLNED FDHFCSCYQY QDGCIVWHQY INCFTLQDLL ENSBTAP00000009521/1-1062 HPVPWDFYIN FKLKERLNEE CDNLCSCYQY QDGCIVWHQY INCFTLQDLL BACU008539/1-839 ---------- ---------- ---------- ---------- ---------- bmy_00633T0/1-1043 ILCHFNFF-- ----ERLNEE CDNLCICYQY QDGCIVWHQY INCFTLQDLL ENSTTRP00000000034/1-1051 QPVPWDFYIN FKLKERLNEE CDNLCICYQY QDGCIVWHQY INCFTLQDLL 851 900 ENSP00000287598/1-1050 QHSEYITHEI TVLIIYNLLT IVEMLHKAEI VHGDLSPRCL ILRNRIHDPY ENSBTAP00000009521/1-1062 QHSEFITHEM TVLIIYNLLT MVEKLHKAEI VHGDLSPRSL ILRNRIHDPY BACU008539/1-839 ---------- ---------- ---------- ---------- ----RIHDPY bmy_00633T0/1-1043 QYSEFITHEM TVLIIYNLLT MMEKLHKAEI VHGDLSPRSL ILRNRIHDPY ENSTTRP00000000034/1-1051 QYSEFITHEM IVLIICNLLT MMEKLHKAEI VHGDLSPRSL ILRNRIHDPY 901 950 ENSP00000287598/1-1050 DCNKNNQALK IVDFSYSVDL RVQLDVFTLS GFRTVQILEG QKILANCSSP ENSBTAP00000009521/1-1062 DFNKNNQALK IVDFSYSVDL RAQLDVFNLS GFRTVQTLEG QKILANCSSP BACU008539/1-839 DCNKNNQALK IVDFSYSVDL RAQLDVFNLS GFRTVQILEG QKILANCSSP bmy_00633T0/1-1043 DCNKNNQALK IVDFSYSVDL RAQLDVFNLS GFRTVQILEG QKILANCSSP ENSTTRP00000000034/1-1051 DCNKNDQALK IVDFSYSVDL RAQLDVFNLS GFRTVQILEG QKILANCSSP 951 1000 ENSP00000287598/1-1050 YQVDLFGIAD LAHLLLFKEH LQVFWDGSFW KLSQNISELK DGELWNKFFV ENSBTAP00000009521/1-1062 YQVDLFGIAD LAHLLLFKEH LQVFWDGSLW KLSQNISELK DGELWNKFFL BACU008539/1-839 YQVDLFGIAD LAHLLLFKEH LQVFWDGSLW RLSQNISELK GGELWNKFFV bmy_00633T0/1-1043 YQVDLFGIAD LAHLLLFKEH LQVFWDGSLW RLSQNISELK GGELWNKFFV ENSTTRP00000000034/1-1051 YQVDLFGITD LAHLLLFKEH LQVFWDGSLW RLSQNISELK GGELWNKFFV 1001 1050 ENSP00000287598/1-1050 RILNANDEAT VSVLGELAAE MNGVFDTTFQ SHLNKALWKV GKLTSPGALL ENSBTAP00000009521/1-1062 RILNASDEST VSVLGELAAE MNGVFDTTFQ SHLNKAFWKV GKLISPGAFL BACU008539/1-839 RILNASDEST VSVLRELAAE MNGVFDTTFQ SHLNKALWKV RKPLAQDSPK bmy_00633T0/1-1043 RILNASDEST VSVLRELAAE MNGVFDTTFQ SHLNKALWKV GKLISPGAFL ENSTTRP00000000034/1-1051 RILNASDEST VSVLRELAAE MNGVFDATFQ SHLNKALWKV GKLISPGAFL 1051 1100 ENSP00000287598/1-1050 FQ-------- ---- ENSBTAP00000009521/1-1062 FQQDRQSSLS QIPA BACU008539/1-839 QTHPEPYLAC GPVV bmy_00633T0/1-1043 FQQDRQSSLS QIPA ENSTTRP00000000034/1-1051 FQQ------- ----