KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:43 2014 Check: 00 .. Name: ENSBTAP00000009531/1-1236 Len: 1282 Check: 8998 Weight: 1.00 Name: bmy_10469T0/1-932 Len: 1282 Check: 7911 Weight: 1.00 Name: ENSP00000264187/1-1247 Len: 1282 Check: 9844 Weight: 1.00 Name: BACU003379/1-1273 Len: 1282 Check: 1824 Weight: 1.00 Name: ENSTTRP00000011525/1-1238 Len: 1282 Check: 3192 Weight: 1.00 // 1 50 ENSBTAP00000009531/1-1236 MLATVRRSGA AWTRALLLQL LLAGPGGCLS RQELFPFGPE HGDLELEAGD bmy_10469T0/1-932 ---------- ---------- ---------- --MMFGF--- ---------- ENSP00000264187/1-1247 MLASSSRIRA AWTRALLLPL LLAGPVGCLS RQELFPFGPG QGDLELEDGD BACU003379/1-1273 MLAAVRRSGA AWTRALLLQL LLAGPGGCLS RQELFPFGPG QGDLELEAGD ENSTTRP00000011525/1-1238 MLAAVRRSGA AWTRALLLQL LLAGPGGCLS RQELFPFGPG QGDLELEAGD 51 100 ENSBTAP00000009531/1-1236 DLVSPALELS TALHFFDRSD IDSVYVTTNG IIAMSEPPAK ETHPGPFPPT bmy_10469T0/1-932 ---------- ---------- ---VQITTNG IIAMSEPPAK ESHPGLFPPT ENSP00000264187/1-1247 DFVSPALELS GALRFYDRSD IDAVYVTTNG IIATSEPPAK ESHPGLFPPT BACU003379/1-1273 DRVSPALELS TALRFFDKSD LNSVYITTNG IIAMSEPPAK ESHPGLFPPT ENSTTRP00000011525/1-1238 DRVSPALELS TALRFFDKSD LNSVYITTNG IIAMSEPPAE EAHPGLFPPT 101 150 ENSBTAP00000009531/1-1236 FGAVAPFLAD LDTTDGLGKV YYREDLSPSV TQLAAECVQR GFPEVSFKPS bmy_10469T0/1-932 FGAVAPFLAD LDTTDGLGKV YYREDLSPSV TQLAAECVQR GFPEVSFKPS ENSP00000264187/1-1247 FGAVAPFLAD LDTTDGLGKV YYREDLSPSI TQRAAECVHR GFPEISFQPS BACU003379/1-1273 FGAVAPFLAD LDTTDGLGKV YYREDLSPSV TQLAAECVQR GFPEVSFKPS ENSTTRP00000011525/1-1238 FGAVAPFLAD LDTTXXXXXX XXXXXXXPSV TQLAAECVQR GFP-VSFKPR 151 200 ENSBTAP00000009531/1-1236 SAVVVTWESV APYQGPSKDP TLEGKVSTPK IPEITSHMAR TELINYSPSC bmy_10469T0/1-932 SVVVVTWESV APYQGPSKDP AQEGKRNTFQ AVLASSDSST YAIFLYPEDG ENSP00000264187/1-1247 SAVVVTWESV APYQGPSRDP DQKGKRNTFQ AVLASSDSSS YAIFLYPEDG BACU003379/1-1273 SVVVVTWESV APYQGPSKDP AQEGKRNTFQ AVLASSDSST YAIFLYPEDG ENSTTRP00000011525/1-1238 SVVVVTWESV APYQGPSKDP AQEGKRNTFQ AVLASSDSST YAIFLYPEDG 201 250 ENSBTAP00000009531/1-1236 SYFGRWFLDR EFITNPAVRA ESRFFEGLMI TSYSVHQFFA SGGQSIGASA bmy_10469T0/1-932 LQFYTTFSKK DENQVPAVVA FSQGLVGLIW KSDGAYNVFA NDRESIGNLA ENSP00000264187/1-1247 LQFHTTFSKK ENNQVPAVVA FSQGSVGFLW KSNGAYNIFA NDRESVENLA BACU003379/1-1273 LQFYTTFSKK DENQVPAVVA FSQGLVGLIW KSDGAYNVFA NDRESIGNLA ENSTTRP00000011525/1-1238 LQFYTTFSKK DENQVPAVVA FSQGLVGFIW KSDGAYNVFA NDRESLGNLA 251 300 ENSBTAP00000009531/1-1236 LASNSMDRGA W------QAT AHGVAEADVV LSGPHRAETT --QQDMVEMY bmy_10469T0/1-932 KSSNSGQQGI WVFEIGSPAT ASGVVPSDVN LGLDDGAEYD --D-DYDLVT ENSP00000264187/1-1247 KSSNSGQQGV WVFEIGSPAT TNGVVPADVI LGTEDGAEYD DEDEDYDLAT BACU003379/1-1273 KSSNSGQQGI WVFEIGSPAT ASGVVPSDVN LGLDDGAEYD --D-DYDSVT ENSTTRP00000011525/1-1238 KSSNSGQQGI WVFEIGSPAT ASGVVPSDVN LGLDDGAEYD --DEDYDSVT 301 350 ENSBTAP00000009531/1-1236 P-VGTTLAKT SSQPFQRHAQ GYFQTLKCPH TLTSRKGQPP QEPGSPPSLR bmy_10469T0/1-932 P-LSLEDTGT TSFPYEARRR GDTGTYNMPS DLSPRRLATE RPPG-PPTER ENSP00000264187/1-1247 TRLGLEDVGT TPFSYKALRR GGADTYSVPS VLSPRRAATE RPLG-PPTER BACU003379/1-1273 P-LSLEDTGT TSFPYEARGR GDTGTYDMPS DLSPRRLATE RPPG-PPTER ENSTTRP00000011525/1-1238 P-LSLEDTGT TSFPYEARRK GDTGTYNVPS DLPPRRLATE RPPG-PPTER 351 400 ENSBTAP00000009531/1-1236 TSMYSFPGKR YSQEQVSVFL MDSVAEGEA- VFRYNTDSRQ TCANNRHQCS bmy_10469T0/1-932 TRSFQLPVER FPQQQPQVID VDEVEETGVA VFSYNTDSRQ TCANNRHQCS ENSP00000264187/1-1247 TRSFQLAVET FHQQHPQVID VDEVEETGV- VFSYNTDSRQ TCANNRHQCS BACU003379/1-1273 TRSFQLPVER FPQQQPQVID VDEVEETGV- VFSYNTDSRQ TCANNRHQCS ENSTTRP00000011525/1-1238 TRSFQLPAER FPQQQPQVID VDEVEETGV- VFSYNTDSRQ TCANNRHQCS 401 450 ENSBTAP00000009531/1-1236 VHAECRDFAT GFCCRCVAGY TGNGRQCVAE GSPQRVNGKV KGRIFVGDSQ bmy_10469T0/1-932 VHAECRDFAT GFCCSCVSGY TGNGRQCVAE GTPQRVNGKV KGKVFVGNSQ ENSP00000264187/1-1247 VHAECRDYAT GFCCSCVAGY TGNGRQCVAE GSPQRVNGKV KGRIFVGSSQ BACU003379/1-1273 VHAECRDFAT GLCCSCVSGY TGNGRQCVAE GTPQRVNGKV KGKVFVGNSQ ENSTTRP00000011525/1-1238 VHAECRDFAT GFCCSCVSGY TGNGRQCVAE GTPQRVNGKV KGKVFVGNSQ 451 500 ENSBTAP00000009531/1-1236 VPIVFENTDL HSYVVMNHGR SYTAISTIPE TVGYSLLPLA PIGGIIGWMF bmy_10469T0/1-932 VPTVFENTDL HSYVVMNHGR SYTAISTIPE TIGYSLLPLA PIGGIIGWMF ENSP00000264187/1-1247 VPIVFENTDL HSYVVMNHGR SYTAISTIPE TVGYSLLPLA PVGGIIGWMF BACU003379/1-1273 VPTVFENTDL HSYVVMNHGR SYTAISTIPE TIGYSLLPLA PIGGIIGWMF ENSTTRP00000011525/1-1238 VPIVFENTDL HSYVVMNHGR SYTAISTIPE TIGYSLLPLA PIGGIIGWMF 501 550 ENSBTAP00000009531/1-1236 AVEQDGFKNG FSITGGEFTR QAEVTFVGHR DKLIIKQQFS GIDEHGHLTI bmy_10469T0/1-932 AVEQDGFKNG FSITGGEFTR QAEVTFVGHP GKLFIKQQFS GIDEHGHLTI ENSP00000264187/1-1247 AVEQDGFKNG FSITGGEFTR QAEVTFVGHP GNLVIKQRFS GIDEHGHLTI BACU003379/1-1273 AVEQDGFKNG FSITGGEFTR QAEVTFVGHP GKLFIKQQFS GIDEHGHLTI ENSTTRP00000011525/1-1238 AVEQDGFKNG FSITGGEFTR QAEVTFVGHP DKLFIKQQFS GIDEHGHLTI 551 600 ENSBTAP00000009531/1-1236 DTELEGRVPQ IAFGSSVHIE PYTELYHYSR QVITSFSTRE YTVTEPERHG bmy_10469T0/1-932 DTELEGRVPQ ITFGSSVHIE PYTELYHYSH QVITSSSTRE YTVTEPERDG ENSP00000264187/1-1247 DTELEGRVPQ IPFGSSVHIE PYTELYHYST SVITSSSTRE YTVTEPERDG BACU003379/1-1273 DTELEGRVPQ IAFGSSVHIE PYTELYHYSH QVITSSSSRE YTVTEPERDG ENSTTRP00000011525/1-1238 DTELEGRVPQ ITFGSSVHIE PYTELYHYSH QVITSSSTRE YTVMEPERDG 601 650 ENSBTAP00000009531/1-1236 TAPSHAHTYR WRQTITFREC LHDDSRPALP STQQLSVDSV FVLYNQEERI bmy_10469T0/1-932 AAPSHVHTYQ WRQTITFQEC VHDDSRPALP RTQQLSVDSV FVLYNQEERI ENSP00000264187/1-1247 ASPSRIYTYQ WRQTITFQEC VHDDSRPALP STQQLSVDSV FVLYNQEEKI BACU003379/1-1273 AAPSHVHTYQ WRQTITFQEC VHDDSRPALP RTQQLSVDSV FVLYNQEERI ENSTTRP00000011525/1-1238 TAPSHVHTYQ WRQTITFQEC VHDDSRPALP STQQLSVDSV FVLYNQEERI 651 700 ENSBTAP00000009531/1-1236 LRYALSNSIG PVRDGSPDAL QNPCYIGSHG CDSNAACRPG PGTQFTCECS bmy_10469T0/1-932 LRYALSNSIG PVRDGSPDAL QNPCYIGTHG CDTNAACRPG PGTQFTCECS ENSP00000264187/1-1247 LRYALSNSIG PVREGSPDAL QNPCYIGTHG CDTNAACRPG PRTQFTCECS BACU003379/1-1273 LRYALSNSIG PVRDGSPDAL QNPCYIGTHG CDTNAACRPG PGTQFTCECS ENSTTRP00000011525/1-1238 LRYALSNSIG PVRDGSPDAL QNPCYIGTHG CDSNAACRPG PGTQFTCECS 701 750 ENSBTAP00000009531/1-1236 IGFRGDGRTC Y--------- ---------- ---------- ----DIDECS bmy_10469T0/1-932 IGFRGDGQTC Y--------- ---------- ---------- ---------- ENSP00000264187/1-1247 IGFRGDGRTC Y--------- ---------- ---------- ----DIDECS BACU003379/1-1273 IGFRGDGQTC YGTAVRSDLV VVGSGVGGCG NRSCTAEGRG RGSTDIDECS ENSTTRP00000011525/1-1238 IGFRGDGQTC Y--------- ---------- ---------- ----DIDECS 751 800 ENSBTAP00000009531/1-1236 EQPSVCGNHA ICNNHPGTFR CECVEGYQFS EAGTCVAAVG LRPVNHCETG bmy_10469T0/1-932 ---------- ------GTFR CECVEGYRFS EEGTCVAVVD QRPINYCEAG ENSP00000264187/1-1247 EQPSVCGSHT ICNNHPGTFR CECVEGYQFS DEGTCVAVVD QRPINYCETG BACU003379/1-1273 EQPSVCGSHA ICNNHPGTFR CECVEGYRFS EEGTCVAVVD QRPINYCETG ENSTTRP00000011525/1-1238 EQPSVCGSHA ICNNYPGTFR CECVEGYRFS EEGTCVAVMD QRPINYCETG 801 850 ENSBTAP00000009531/1-1236 LHDCDIPQRA RCIYMGGSSY TCSCLPGFSG DGRACQDVDE CQPSRCHPDA bmy_10469T0/1-932 LHDCDISQRA QCIYLGGSSY TCSCLPGFSG DGRACQDVDE CQLSQCHPDA ENSP00000264187/1-1247 LHNCDIPQRA QCIYTGGSSY TCSCLPGFSG DGQACQDVDE CQPSRCHPDA BACU003379/1-1273 LHDCDISQRA QCIYLGGSSY TCSCLPGFSG DGRACQDVDE CQLSRCHPDA ENSTTRP00000011525/1-1238 LHDCDISQRA QCIYLGGSSY TCSCLPGFSG DGRACQDVDE CQLSRCHPDA 851 900 ENSBTAP00000009531/1-1236 FCYNTPGSFT CRCKSGYQGD GFHCVPGVVE KTRCQHEREH ILGTA---DS bmy_10469T0/1-932 VCYNTPGSFT CQCKPGYQGD GFRCMPG--- ---------- --GKV----- ENSP00000264187/1-1247 FCYNTPGSFT CQCKPGYQGD GFRCVPGEVE KTRCQHEREH ILGAAGATDP BACU003379/1-1273 VCYNTPGSFT CQCKPGYQGD GFRCMPGEVE KTRCQHEREH ILGAV---DP ENSTTRP00000011525/1-1238 VCYNTPGSFT CQCKPGYQGD GFHCVPGEVE KTRCQHEREH ILGAV---DP 901 950 ENSBTAP00000009531/1-1236 SRPRPPGLFV PECDEHGQYV PTQCHSSTGY CWCVDRDGRE VQGTRTRSGM bmy_10469T0/1-932 -----SGTFG ISRVGLDYYG ---------- ---------E ISLTLRFPG- ENSP00000264187/1-1247 QRPIPPGLFV PECDAHGHYA PTQCHGSTGY CWCVDRDGRE VEGTRTRPGM BACU003379/1-1273 QRPRPPGLFV PECDEHGHYA PTQCHGSTGY CWCVDRDGRE VEGTRTTPGM ENSTTRP00000011525/1-1238 QRPRPPGLFV PECDEHGYYA PTQCHGSTGY CWCVDRDGRE VEGTRTTPGM 951 1000 ENSBTAP00000009531/1-1236 RPPCLSTVAP PVHYGPPVPT TVIPLPPGTH LLFAQTGKIE RLPLEGSTMT bmy_10469T0/1-932 ---------- ---------- -SAPLPRWTF FFLVRV---- ---------- ENSP00000264187/1-1247 TPPCLSTVAP PIHQGPAVPT AVIPLPPGTH LLFAQTGKIE RLPLEGNTMR BACU003379/1-1273 RPPCLSTVAP PVHHGPSVPT AVIPLPPGTH LLFAQTGKIE HLPLEGSTMT ENSTTRP00000011525/1-1238 RPPCLSTVAP PVHHRPSVPT AVIPLPPGTH LLFAQTGKIE HLPLEGNTMT 1001 1050 ENSBTAP00000009531/1-1236 KSEAKTLLHA PGKVIIGLAF DCVDKMVYWT DISQPSIGRA SLHGGEPATI bmy_10469T0/1-932 ---------- ---IFILLSF DSI------- ---------- ------PSTF ENSP00000264187/1-1247 KTEAKAFLHV PAKVIIGLAF DCVDKMVYWT DITEPSIGRA SLHGGEPTTI BACU003379/1-1273 KTEAKALLHA PDKVIIGLAF DCVDKIVYWT DISQPSIGRA SLHGGEPSTI ENSTTRP00000011525/1-1238 KTEAKALLHA PX-XXIGLAF DCVDKMVYWT DISQ-SIGRA SLHGGEPSTI 1051 1100 ENSBTAP00000009531/1-1236 VRQDLGSPEG IALDHLGRNI FWTDSQLDRI EVAKLDGTQR RVLFETDLVN bmy_10469T0/1-932 ------SPVG AR----SSSC CWL------- ---------- -------YIP ENSP00000264187/1-1247 IRQDLGSPEG IAVDHLGRNI FWTDSNLDRI EVAKLDGTQR RVLFETDLVN BACU003379/1-1273 IRQDLGSPEG IALDHLGRNI FWTDSHLDRI EVAKLDGTQR RVLFETDLVN ENSTTRP00000011525/1-1238 IRQDLGSPEG IALDHLGRNI FWTDSHLDRI EVAKLDGTQR RVLFETDLVN 1101 1150 ENSBTAP00000009531/1-1236 PRGIVTDSVR GNLYWTDWNR DNPKIETSYM DGTNRRILVQ DDLGLPNGLT bmy_10469T0/1-932 PRSRKIPP-K FQLPFSNW-- --PAFQRNTV --TDERW--S AGLKIPAVYI ENSP00000264187/1-1247 PRGIVTDSVR GNLYWTDWNR DNPKIETSYM DGTNRRILVQ DDLGLPNGLT BACU003379/1-1273 PRGIVTDSVR GNLYWTDWNR DSPKIETSYM DGTNRRILVQ DDLGLPNGLT ENSTTRP00000011525/1-1238 PRGIVTDSVR GNLYWTDWNR DSPKIETSYM DGTNRRILVQ DDLGLPNGLT 1151 1200 ENSBTAP00000009531/1-1236 FDAYSSQLCW VDAGAHRAEC LKPGQSSRRK VLEGLQYPFA VTSFGKNLYY bmy_10469T0/1-932 VSSHSTHASN NTVG-----L VTPAIAGQPA LLTG---PEV VELSIKNIFQ ENSP00000264187/1-1247 FDAFSSQLCW VDAGTNRAEC LNPSQPSRRK ALEGLQYPFA VTSYGKNLYF BACU003379/1-1273 FDAYSSQLCW VDAGTHQAEC LKPDQPSRRK VLEGLQYPFA VTSFGKNLYY ENSTTRP00000011525/1-1238 FDAYSSQLCW VDAGTHRAEC LKPDQPSRRK VLEGLQYPFA VTSFGKNLYY 1201 1250 ENSBTAP00000009531/1-1236 TDWKTNSVVA VDLAVSKETD SFHPHKQTRL YGITSALSQC PEGHNYCSVN bmy_10469T0/1-932 TQNSVKYVI- ---------- YYYILYYYNI YIMNTAIY-- ---------- ENSP00000264187/1-1247 TDWKMNSVVA LDLAISKETD AFQPHKQTRL YGITTALSQC PQGHNYCSVN BACU003379/1-1273 TDWKTNSVVA VDLAISKETD SFHPQKQTRL YGITTALSQC PEGHNYCSVN ENSTTRP00000011525/1-1238 TDWKMNSVVA VDLAISRETD SFHPHKETRL YGITTALSQC PEGHNYCSVN 1251 1300 ENSBTAP00000009531/1-1236 NGGCTHLCLA TPGSRTCRCP DNTLGVDCIE RK bmy_10469T0/1-932 ---------- ---------- ---------- -- ENSP00000264187/1-1247 NGGCTHLCLA TPGSRTCRCP DNTLGVDCIE QK BACU003379/1-1273 NGGCTHLCLA TPGSRTCRCP DNTLGVDCIE RK ENSTTRP00000011525/1-1238 NGGCTHLCLA TPGSRTCRCP DNTLGVDCIE RK