KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:38:48 2014  Check: 00 ..

 Name: ENSP00000445162/1-308     Len:    309  Check:  8101  Weight:  1.00
 Name: ENSBTAP00000009561/1-305  Len:    309  Check:  4599  Weight:  1.00
 Name: ENSTTRP00000006871/1-305  Len:    309  Check:  2699  Weight:  1.00
 Name: bmy_01481T0/1-281         Len:    309  Check:  3111  Weight:  1.00
 Name: BACU014523/1-309          Len:    309  Check:  84  Weight:  1.00

//


                          1                                                   50
ENSP00000445162/1-308     MVSDEDELNL LVIVVDANPI WWGKQALKES QFTLSKCIDA VMVLGNSHLF 
ENSBTAP00000009561/1-305  ----EDELNL LVIIVDTNPI WWGKQALKES QFTLSKCIDA VMVLGNSHLF 
ENSTTRP00000006871/1-305  MVSDEDELNL LVIIVDTNPI WWGKQALKES QFTLSKCIDA VMVLGNSHLF 
bmy_01481T0/1-281         MVSDEDELNL LVIIVDTNPI WWGKQALKES QFTLSKCIDA VMVLGNSHLF 
BACU014523/1-309          MVSDEDELNL LVIIVDTNPI WWGKQALKES QFTLSKCIDA VMVLGNSHLF 


                          51                                                 100
ENSP00000445162/1-308     MNRSNKLAVI ASHIQESRFL YPGKNGRLGD FFGDPGNP-P EFNPSGSKDG 
ENSBTAP00000009561/1-305  MNRSNKLAVI ASHIQESRFL YPGKNGRLGD FFGDPGNPSS EFTPSGSKDG 
ENSTTRP00000006871/1-305  MNRSNKLAVI ASHIQESRFL YPGKNGRLGD FFGDPGNASS EFIPSGSKDG 
bmy_01481T0/1-281         MNRSNKLAVI ASHIQESRFL YPGKNGRLGD FFGDPGNPSS EFTPSGSKDG 
BACU014523/1-309          MNRSNKLAVI ASHIQESRFL YPGKNGRLGD FFGDPGNPSS EFTPSGSKDG 


                          101                                                150
ENSP00000445162/1-308     KYELLTSANE VIVEEIKDLM TKSDIKGQHT ETLLAGSLAK ALCYIHRMNK 
ENSBTAP00000009561/1-305  KYELLTAANE VIAEEIKDLM TKSDIEGQHT ETLLAGSLAK ALCYIHRMNK 
ENSTTRP00000006871/1-305  KYELLTAANE VIVEEIKDLM TKSDIEGQHT ETLLAGSLAK ALCYIHRMSK 
bmy_01481T0/1-281         KYELLTAANE VIVEEIKDLM TKSDIEGQHT ETLLAGSLAK ALCCILGVLI 
BACU014523/1-309          KYELLTAANE VIVEEIKDLM TKSDIEGQHT ETLLAGSLAK ALCYIHRMNK 


                          151                                                200
ENSP00000445162/1-308     EVKDNQEMKS RILVIKAAED SALQYMNFMN VIFAAQKQNI LIDACVLDSD 
ENSBTAP00000009561/1-305  EVKDNQEMKS RILVIKAAED SALQYMNFMN VIFAAQKQNI LIDACVLDSD 
ENSTTRP00000006871/1-305  DVKDNQEMKS RILVIKAAED STLQYMNFMN VIFAAQK-NI LIDACVLDSD 
bmy_01481T0/1-281         IQK------- ---VIKAAED STLQYMNFMN VIFAAQK--- ---------- 
BACU014523/1-309          DVKDNQEMKS GILVIKAAED STLQYMNFMN VIFAAQKQNI LIDACVLDSD 


                          201                                                250
ENSP00000445162/1-308     SGLLQQACDI TGGLYLKVPQ MPSLLQYLLW VFLPDQDQRS QLILPPPVHV 
ENSBTAP00000009561/1-305  SGLLQQACDI TGGLYLKVPQ MPSLLQYLLW VFLPDQDQRS QLILPPPVHV 
ENSTTRP00000006871/1-305  SGLLQQACDI TGGLYLKVPQ MPSLLQYLLW VFLPDQDQRS QLTLPPPVHV 
bmy_01481T0/1-281         -----QACDI TGGLYLKVPQ MPSLLQYLLW VFLPDQDQRS QLTLPPPVHV 
BACU014523/1-309          SGLLQQACDI TGGLYLKVPQ IPSLLQYLLW VFLPDQDQRS QLTLPPPVHI 


                          251                                                300
ENSP00000445162/1-308     DYRAACFCHR NLIEIGYVCS VCLSIFCNFS PICTTCETAF KISLPPVLKA 
ENSBTAP00000009561/1-305  DYRAACFCHR NLIEIGYVCS VCLSIFCNFS PICTTCETAF KISLPPVLKA 
ENSTTRP00000006871/1-305  DYRAACFCHR NLIEIGYVCS VCLSI-C--L SICTTCETAF KISLPPVLKA 
bmy_01481T0/1-281         DYRAACFCHR NLIEIGYVCS VCLSIFCNFS PICTTCETAF KISLPPVLKA 
BACU014523/1-309          DYRAACFCHR NLIEIGYVCS VCLSIFCNFS PICTTCETAF KISLPPVLKA 


                          301                                                350
ENSP00000445162/1-308     KKKKLKVSA 
ENSBTAP00000009561/1-305  KKKKLKMSS 
ENSTTRP00000006871/1-305  KKKKLKMSA 
bmy_01481T0/1-281         KKKKLKMSA 
BACU014523/1-309          KKKKLKMSA