KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:48 2014 Check: 00 .. Name: ENSTTRP00000006874/1-697 Len: 802 Check: 4193 Weight: 1.00 Name: ENSP00000304941/1-697 Len: 802 Check: 5421 Weight: 1.00 Name: ENSBTAP00000009562/1-692 Len: 802 Check: 9254 Weight: 1.00 Name: bmy_01482T0/1-726 Len: 802 Check: 7339 Weight: 1.00 Name: BACU013660/1-698 Len: 802 Check: 6636 Weight: 1.00 // 1 50 ENSTTRP00000006874/1-697 ---------- ---------- ---------- ---------- ---------- ENSP00000304941/1-697 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009562/1-692 ---------- ---------- ---------- ---------- ---------- bmy_01482T0/1-726 MNAASYFFVI LCVVRRRPKD LRPVGWAEMX RLGLRAGALC CWSNHGAPLR BACU013660/1-698 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006874/1-697 ---------- ---------- ---------- ---------- ---------- ENSP00000304941/1-697 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009562/1-692 ---------- ---------- ---------- ---------- ---------- bmy_01482T0/1-726 QTGGRLVVAI APGVRLTRWR RVSRGSVLVS PRFQASKAGA VLQCRPSETP BACU013660/1-698 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006874/1-697 -MRLPPPVPL LLRLLLLQSV LRPLWGDLVF MPPVIRMSGP AVSASLVGGT ENSP00000304941/1-697 -MGFQPPAAL LLRLFLLQGI LRLLWGDLAF IPPFIRMSGP AVSASLVGDT ENSBTAP00000009562/1-692 -MRLSPPVPL LLGLLLLQGV LRPLRGDLVF IPSVIRMSGS VVSASLVGGT bmy_01482T0/1-726 GMRLPPPVPL LLGLLLLQSV LRPLWGDLVF MPPVIRMSGP AVSASLVGGT BACU013660/1-698 -MRLPPPVPL LLGLFFLQSV LRPLWGDLVF MPPVILMSGP EVSASLVGGT 151 200 ENSTTRP00000006874/1-697 EDVTVSLTQL RDEMGFLPVP TCGVLSNETG DWSLTVSPTV NSLEVTVKLK ENSP00000304941/1-697 EGVTVSLAVL QDEAGILPIP TCGVLNNETE DWSVTVIPGA KVLEVTVRWK ENSBTAP00000009562/1-692 EDVTVSLTQL RDEMGLLPVP TCGELNNETG DWSLTVTPTV NSLEVTVRLK bmy_01482T0/1-726 EDVTVSLTQL RDEMGFLPVP DCGVLSNETR DWSLTVSPTV NSLEVTVRLK BACU013660/1-698 EDVTVSLTQL RDEMGFLPVP ACGVLSNETG DWSLTVSPTV NSLEVTVRLK 201 250 ENSTTRP00000006874/1-697 RGLPSCLSNE TDPFPEAPCI VQTLLVSASR HSSCLAHLLV QVEIYANSSV ENSP00000304941/1-697 RGLDWCSSNE TDSFSESPCI LQTLLVSASH NSSCSAHLLI QVEIYANSSL ENSBTAP00000009562/1-692 RDMQSCSSNG TDPFLEAPCI VQALLVSAFH NTSCLAHLLI HVEIYANSSL bmy_01482T0/1-726 RGLPSCLSNE TDPFPEAPCI VQTLLVS--- ---------- ---------- BACU013660/1-698 RGLSSCLSNE TDPFPEAPCI VQTLLVSASR HSSCLAHLLV QVEIYANSSL 251 300 ENSTTRP00000006874/1-697 AQNASXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304941/1-697 THNASENVTV IPNQVYQPLG PCPCNLTAGA CDVRCCCDQE CSSNLTTLFR ENSBTAP00000009562/1-692 GQNASENVTV VPNQVYQPLG PCPCNLTAGA CDIRCCCDQE CSSDLTALFR bmy_01482T0/1-726 ---ASQNVTV IPNQVYQPLG PCPCNLTAGA CDVRCCCDQE CSSDLTALFR BACU013660/1-698 AQNASENVTV IPNQVYQPLG PCPCNLTAGA CDIRCCCDQE CSSDSTALFR 301 350 ENSTTRP00000006874/1-697 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304941/1-697 RSCFTGVFGG DVNPPFDQLC SAGTTTRGVP DWFPFLCVQS PLANTPFLGY ENSBTAP00000009562/1-692 ESCFPGVFGG DVNPPFDQLC SI-QMSHGVP DWFPFLCVQ- -LANSPFLGY bmy_01482T0/1-726 ESCFPGVFGG DVNPPFDQLC SV-QTARGVP DWFPFLCVQ- -LANSPFLGY BACU013660/1-698 ESCFPGVFGG DVNPPFDQLC SV-QTARGVP VWFPFLCVQ- -LANSPFLGY 351 400 ENSTTRP00000006874/1-697 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVS ENSP00000304941/1-697 FYHGAVSPKQ DSSFEVYVDT DAKDFADFGY KQGDPIMTVK KAYFTIPQVS ENSBTAP00000009562/1-692 FYHGSISSGH QVSFGIYLHT DLKDFSDFGY KQGDPVMTVD KAYFTIPQVS bmy_01482T0/1-726 FYH------- ---------- ---DFSDFGY KQGDPVMTVD KAYFTIPQVS BACU013660/1-698 FYHGSVSSGQ HASFDMYLHT DLKDFSDFGY KQGDPVMTVD KAYFTIPQVS 401 450 ENSTTRP00000006874/1-697 LAGQCMQNAP VAFLQNFDVQ CVTSLEVYPE RDRITNVKVK NGTIGGIVTP ENSP00000304941/1-697 LAGQCMQNAP VAFLHNFDVK CVTNLELYQE RDGIINAKIK NVALGGIVTP ENSBTAP00000009562/1-692 LAGQCLYNAP VAFLQNFDVQ CVTSLEEYLE RDGITSAKIK NGAMGGIVTP bmy_01482T0/1-726 LAGQCMQDAP VAFLQNFDVQ CVTSLEVCPE RDRITNVKVK NGTMGGIVTP BACU013660/1-698 LAGQCMQNAP VAFLQNFDVQ CVTSLEAYPE RDRITNVKVK NGTMGGIVTP 451 500 ENSTTRP00000006874/1-697 KVIYEEATDL DRFITNTXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000304941/1-697 KVIYEEATDL DKFITNTETP LNNGSTPRIV NVEEHYIFKW NNNTISEINV ENSBTAP00000009562/1-692 KVIYEEATDL DRFITNTETL LSTGPAPRNV NVEEHYIFRW NNNTISEINV bmy_01482T0/1-726 KVIYEEATDL DRFITNTETL LSTGSASRNV NVEEHYIFRW NNNTISEINV BACU013660/1-698 KVIYEEATDL DRFITNTETL LSTGSAPRNV NVEEHYIFRW NNNTISEINV 501 550 ENSTTRP00000006874/1-697 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY QLGKPVRALN ENSP00000304941/1-697 KIFRAEINAH QKGIMTQRFV VKFLSYNSGN EEELSGNPGY QLGKPVRALN ENSBTAP00000009562/1-692 RIIRAEINAQ QKGIMTQRFT VKFLSYNSGN KQEWSGNPGY QLGKPVRALS bmy_01482T0/1-726 KIIKAEINAH QKGIMTQRFT VKFLSYNSGN EKELSGNP-- ---------- BACU013660/1-698 KIIRAEINAH QKGIMTQRFT VKFLSYNSGN EKELSGNPGY QLGKPVRALN 551 600 ENSTTRP00000006874/1-697 TNRMNNVTTL HLWQSAGRGL CISATFKPIL FGENALSGCL LEVGINENCT ENSP00000304941/1-697 INRMNNVTTL HLWQSAGRGL CTSATFKPIL FGENVLSGCL LEVGINENCT ENSBTAP00000009562/1-692 TNGTNNVTTL HLWYPAGGSL CSTATRKPIL FGENVLSGCL LEVGINENCT bmy_01482T0/1-726 ---------- -----AGRGL CISATFKPIL FGENALSGCL LEVGINENCT BACU013660/1-698 TNRMNNVTTL HLWQSAGRGL CISATFKPIL FGENALSGCL LEVGINENCT 601 650 ENSTTRP00000006874/1-697 QLRENAVELL DSLIQVTHVA MRGNSNYNNL SDGWLEIIRA DAPDAGADPP ENSP00000304941/1-697 QLRENAVERL DSLIQATHVA MRGNSDYADL SDGWLEIIRV DAPDPGADPL ENSBTAP00000009562/1-692 KLRENAVELL DSLVQVTHVA MRGNSDYNDL SDGWLEIIRV DALGAGADPP bmy_01482T0/1-726 QLRENAVELL DSLIQVTHVA MRGNSNYDNL SDGWLEIIRA DAPDAGADPP BACU013660/1-698 QLRENAVELL GSLIQVTHVA MRGNSNYDNL SDGWLEIIRA DAPDAGADPP 651 700 ENSTTRP00000006874/1-697 VSNASGICLG VPAQLNVRIL FSDAGAVEGM TQQEILGIET RFSSVSWQFQ ENSP00000304941/1-697 ASSVNGMCLD IPAHLSIRIL ISDAGAVEGI TQQEILGVET RFSSVNWQYQ ENSBTAP00000009562/1-692 DSNVSGICLD VPAQLNIRIL FSDAGAVEGM TQQEILGVET RFSSVTWQFQ bmy_01482T0/1-726 VSNASGICLD VPAQLNIRIL FSDAGAVEGM TQQEILGVET RFSSVTWQFQ BACU013660/1-698 VSNASGICLD VPAQLNIRIL FSDAGAVEGM TQQEILGVET RFSSVTWQFQ 701 750 ENSTTRP00000006874/1-697 CGLTCEDEVS LFPISASVQF IKIPAELPRP LTRFQINFTE YNCNRNEVCW ENSP00000304941/1-697 CGLTCEHKAD LLPISASVQF IKIPAQLPHP LTRFQINYTE YDCNRNEVCW ENSBTAP00000009562/1-692 CGLTCEDKAD LFPIGASVQF IKIPAQLPHP LTRFQINFTE YDCNRNEVCW bmy_01482T0/1-726 CGLTCEDEAN LFPISASVQF IKIPAQLPRP LTRFQINFTE YNCNRNEVCW BACU013660/1-698 CGLTCEDEAN LFPISASVQF IKIPAQLPRP LTRFQINFTE YNCNRNEVCW 751 800 ENSTTRP00000006874/1-697 PQLLYPLTQY YQGEPYSQCV AKSLLLASFI TLAVFLSNPW TGI-KAWNS- ENSP00000304941/1-697 PQLLYPWTQY YQGELHSQCV AKGLLLLLFL TLALFLSNPW TRICKAYS-- ENSBTAP00000009562/1-692 PQLLYPLTQY YRGEPYSQCV AKSLLLVSFI ILAVFLSNPW IRIHKA---- bmy_01482T0/1-726 PQLLYPLTQY YQGEPYSQCV AKSLLLASFV VLAVFLSNPW SGICKAWNSA BACU013660/1-698 PQLLYPLTQY YQGEPYSQCV GKSLLLASFV VLAVFLSNPW SGICKAWNSA 801 850 ENSTTRP00000006874/1-697 -- ENSP00000304941/1-697 -- ENSBTAP00000009562/1-692 -- bmy_01482T0/1-726 TT BACU013660/1-698 TT