KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:50 2014 Check: 00 .. Name: ENSP00000385834/1-698 Len: 1063 Check: 9009 Weight: 1.00 Name: ENSBTAP00000009564/1-704 Len: 1063 Check: 2834 Weight: 1.00 Name: ENSTTRP00000007358/1-700 Len: 1063 Check: 7271 Weight: 1.00 Name: bmy_04728T0/1-754 Len: 1063 Check: 601 Weight: 1.00 Name: BACU003186/1-1015 Len: 1063 Check: 7693 Weight: 1.00 // 1 50 ENSP00000385834/1-698 ---------- ---------- ---------- ---------- -------MRL ENSBTAP00000009564/1-704 ---------- ---------- ---------- ---------- -------MRP ENSTTRP00000007358/1-700 ---------- ---------- ---------- ---------- -------MRL bmy_04728T0/1-754 GKRAAQTKGV KDCAWPAPRG IKGRRAQGGG PEAGPSVLGT PLRRPGRMRL BACU003186/1-1015 ---------- ---------- ---------- ---------- -------MRL 51 100 ENSP00000385834/1-698 AVGALLVCAV LGLCLAVPDK TVRWCAVSEH EATKCQSFRD HMKSVIPSDG ENSBTAP00000009564/1-704 AVRALLACAV LGLCLADPER TVRWCTISTH EANKCASFRE NVLRIL-ESG ENSTTRP00000007358/1-700 AVCALLACAV LGLCLAVSEK TVRWCTVSSH EANKCSSFRE NMNKVLADTG bmy_04728T0/1-754 AVRALLACAV LGLCLAIPEK TVRWCTVSSH EASKCSSFRE NMNKVF-DTG BACU003186/1-1015 AVRALLACAV LGLCLATPEK TVRWCTVSSH EASKCSSFRE NMNKVF-DTG 101 150 ENSP00000385834/1-698 PSVACVKKAS YLDCIRAIAA NEADAVTLDA GLVYDAYLAP NNLKPVVAEF ENSBTAP00000009564/1-704 PFVSCVKKTS HMDCIKAISN NEADAVTLDG GLVYEAGLKP NNLKPVVAEF ENSTTRP00000007358/1-700 PFVSCVKKTS YIDCIKAIMD NEADAVTLDG GLVFEAGLKP YNLKPAVAEY bmy_04728T0/1-754 PFVSCVKKTS YIDCIKAIMD NEADAVTLDG GLVFEAGLKP YNLKPVVAEF BACU003186/1-1015 PFVSCVKKTS YIDCIKAIMD NEADAVTLDG GLVFEAGLKP YNLKPVVAEF 151 200 ENSP00000385834/1-698 YGSKEDPQTF YYAVAVVKKD SGFQMNQLRG KKSCHTGLGR SAGWNIPIGL ENSBTAP00000009564/1-704 HGTKDNPQTH YYAVAVVKKD TDFKLNELRG KKSCHTGLGR SAGWNIPMGK ENSTTRP00000007358/1-700 YGPKDKPQTQ YYAVAVVKKG TEFGLKELKG KKSCHTGLGR SAGWNIPMGL bmy_04728T0/1-754 YGPKDNLKTH YYAVAVVKKG TGFNLKELKG KKSCHTGLGR SAGWNIPMGL BACU003186/1-1015 YGTKDNPKTH YYAVAVVKKG TDFNLKDLKG KKSCHTGLGR SAGWNIPMGL 201 250 ENSP00000385834/1-698 LYCDLPEPRK PLEKAVANFF SGSCAPCADG TDFPQLCQLC PG-----CGC ENSBTAP00000009564/1-704 LYKELPDPQE SIQRAAANFF SASCVPCADQ SSFPKLCQLC AGKGTDKCAC ENSTTRP00000007358/1-700 LYWDLPEPHE SLQRAAASFF AGSCVPCVDQ SAFPKLCQLC AGKGTDKCAC bmy_04728T0/1-754 LYWDLPEPQE SLQRAAASFF AGSCVPCVDQ SSFPKLCQLC AGKGPDKCAC BACU003186/1-1015 LYWDLPEPQE SLQRAAASFF AGSCVPCVDQ SSFPKLCQLC AGKGPDKCAC 251 300 ENSP00000385834/1-698 STLNQYFGYS GAFKCLKDGA GDVAFVKHST IFENLANKAD RDQYELLCLD ENSBTAP00000009564/1-704 SNHEPYFGYS GAFKCLMEGA GDVAFVKHST VFDNLPNPED RKNYELLCGD ENSTTRP00000007358/1-700 SNHEPYFGYS GAFKCLMEDA GEVAFVKHTT VFENLPNEAD RDEYELLCRD bmy_04728T0/1-754 SNHEPYFGYS GAFKCLMDDA GDVAFVKHTT VLENLPNEAD RDEYELLCRD BACU003186/1-1015 SNHEPYFGYS GAFKCLMDGV GDVAFVKHTT VLENLPDEAD KDEYELLCRD 301 350 ENSP00000385834/1-698 NTRKPVDEYK DCHLAQVPSH TVVARSMGGK EDLIWELLNQ AQEHFGKDKS ENSBTAP00000009564/1-704 NTRKSVDNYQ ECYLAMVPSH AVVARTVGGK EDVIWELLNH AQEHFGKDKP ENSTTRP00000007358/1-700 NTRGPVDEYE RCHLARVPSH AVVARSMGGK EDLIWELLNQ AQEHFGRDTS bmy_04728T0/1-754 DTRGSVDEFE RCHLARVPSH AVVARSMGGK EDLIWELLNL AQEHFGRGTS BACU003186/1-1015 NTRGSVDEFE KCHLARVPSH AVVARSMGGK EDLIWELLNL AQEHFGKGIS 351 400 ENSP00000385834/1-698 KEFQLFSSPH GKDLLFKDSA HGFLKVPPRM DAKMYLGYEY VTAIRNLREG ENSBTAP00000009564/1-704 DNFQLFQSPH GKDLLFKDSA DGFLKIPSKM DFELYLGYEY VTALQNLRES ENSTTRP00000007358/1-700 ESFQLFSSPH GKDLLFKDSA NGFLKIPPKM DSWLYLGYEY VTALRNLRED bmy_04728T0/1-754 EDFQLFSSPH GKDLLFKDSA NGFLKIPPKM DSWLYLGYEY VTALRNLRED BACU003186/1-1015 EDFQLFSSPH GKDLLFKDSA NGFLKIPPKM DSWLYLGYEY VTALRNLRED 401 450 ENSP00000385834/1-698 TCPEAPTDEC KPVKWCALSH HERLKCDEWS VNSVGKIECV SAETTEDCIA ENSBTAP00000009564/1-704 KPPDSSKDEC M-VKWCAIGH QERTKCDRWS GFSGGAIECE TAENTEECIA ENSTTRP00000007358/1-700 TRPIASKDEC KKVKWCAVHH QEKVKCDMWS VSSDGEIECE SADSTEECIA bmy_04728T0/1-754 TRPSTSKGEC KKVKWCAVHH LERVKCDMWS VNSDGKIECE SAENTEDCIA BACU003186/1-1015 TRPSTSKGEC KKVKWCAVHH LERVKCDMWS VNSDGKIECE SAESTEECIA 451 500 ENSP00000385834/1-698 KIMNGEADAM SLDGGFVYIA GKCGLVPVLA ENYN-KSDNC EDTPEAGYFA ENSBTAP00000009564/1-704 KIMKGEADAM SLDGGYLYIA GKCGLVPVLA ENYKTEDGSC KNTPEKGYLA ENSTTRP00000007358/1-700 KITKGEADAM SLDGGYIYIA GKCGLVPVLA ENYK--GQHC TTTLEDGYLA bmy_04728T0/1-754 KIMKGEADAM SLDGGYIYIA GKCGLVPVLA ENYKNEGDDC KFTPGSGYYA BACU003186/1-1015 KIMKGEADAM SLDGGHIYIA GKCGLVPVLA ENYKNEGEDC KFTPESGYYA 501 550 ENSP00000385834/1-698 IAVVKK-SAS DLTWDNLKGK KSCHTAVGRT AGWNIPMGLL YNKINHCRFD ENSBTAP00000009564/1-704 VAVVKT-SDA NINWNNLKGK KSCHTAVDRT AGWNIPMGLL YSKINNCKFD ENSTTRP00000007358/1-700 VAVVKK-SDT DLNWNNLKGR KSCHTAVDRT AGWNIPMGLL YNNINHCEFD bmy_04728T0/1-754 VAVVKKSSDP DLNWNNLKGR KSCHTAVDRT AGWNIPMGLL YEKINHCEFD BACU003186/1-1015 VAVVKKSSDP DLNWNNLKDR KSCHTAVDRT AGWNIPMGLL YEKINHCEFD 551 600 ENSP00000385834/1-698 EFFSEGCAPG SKKDSSLCKL CMGSG---LN LCEPNNKEGY YGYTGAFRCL ENSBTAP00000009564/1-704 EFFSAGCAPG SPRNSSLCAL CIGSEKGTGK ECVPNSNERY YGYTGAFRCL ENSTTRP00000007358/1-700 KFFSEGCAPG SLRDSSLCAL CIGSD---RR ECLPNNHERY YGYSGAFRCL bmy_04728T0/1-754 KFFSEGCAPG SPRNSSLCAL CIGSEGFPGR ECLPNNYERY YGYSGAFRCL BACU003186/1-1015 KFFSEGCAPG SPRNSSLCAL CIGSEGFPGR ECLPNNYERY YGYSGAFRCL 601 650 ENSP00000385834/1-698 VEKGDVAFVK HQTVPQNTGG KNPDPWAKNL NEKDYELLCL DGTRKPVEEY ENSBTAP00000009564/1-704 VEKGDVAFVK DQTVIQNTDG NNNEAWAKNL KKENFEVLCK DGTRKPVTDA ENSTTRP00000007358/1-700 VEKGDVAFVK AQTVTENTGG NNPEEWAKTL QEEDFELLCT DGSRKPVKDA bmy_04728T0/1-754 VEKGDVAFVK DQTIKENTGG NNPEEWAKSL QAEDFQLLCT DGTRKPVEEA BACU003186/1-1015 VEKGDVAFVK DQTVKENTGG NNPEEWAKTL QEDDFELLCT DGTRKSVEEA 651 700 ENSP00000385834/1-698 ANCHLARAPN HAVVTRKDKE ACVHKILRQQ QHLFGSNVTD CSGNFCLFRS ENSBTAP00000009564/1-704 ENCHLARGPN HAVVSRKDKA TCVEKILNKQ QDDFGKSVTD CTSNFCLFQS ENSTTRP00000007358/1-700 IDCHLARAPN HAVVSREDKA ACVRRILDKQ QXXXXXXXXX XXXXXXXXXX bmy_04728T0/1-754 SNCFLAQAPN HAVVSREDKA ACVREILAKQ QDEFGKHGND CSGSFCLFHS BACU003186/1-1015 SDCFLAQGPN HAVVSREDKA ACVREILDAQ QDEFGKHGSD CSSSFCLFHS 701 750 ENSP00000385834/1-698 ETKDLLFRDD TVCLAKLHDR NTYEKYLGEE YV-------- ---------- ENSBTAP00000009564/1-704 NSKDLLFRDD TKCLASIAKK -TYDSYLGDD YV-------- ---------- ENSTTRP00000007358/1-700 XXXXXXXXXX XXXLAALPNA TTYE-YLGTE YV-------- ---------- bmy_04728T0/1-754 ETKDLLFRSD TKCLAPLQDA ITYESYLGTE YV-------- ---------- BACU003186/1-1015 ETKDLLFRSD TKCLAPLQNA ITYESYLGNN SVFRRERSVQ ENYNYHQDLR 751 800 ENSP00000385834/1-698 ---------- ---------- ---------- ---------- KAVGN----- ENSBTAP00000009564/1-704 ---------- ---------- ---------- ---------- RAMTN----- ENSTTRP00000007358/1-700 ---------- ---------- ---------- ---------- TAVAN----- bmy_04728T0/1-754 ---------- ---------- ---------- ---------- TAVAN----- BACU003186/1-1015 DPGLRRRKYN LGTTTPVMLR FARLRRAEGH VAFAVPGSKI SAMASADSRR 801 850 ENSP00000385834/1-698 ---------- ---------- -LRK------ ---------- ---------- ENSBTAP00000009564/1-704 ---------- ---------- -LRQ------ ---------- ---------- ENSTTRP00000007358/1-700 ---------- ---------- --RQ------ ---------- ---------- bmy_04728T0/1-754 ---------- ---------- -LRQ------ ---------- ---------- BACU003186/1-1015 MGNGGSVGGA FQLYLDSLRQ ELRQRDPTLL SVVVALVAVL LTLVFWKFIR 851 900 ENSP00000385834/1-698 ---------- ----CSTSS- ---------- ---------- ---------- ENSBTAP00000009564/1-704 ---------- ----CSTSK- ---------- ---------- ---------- ENSTTRP00000007358/1-700 ---------- ----CSTSK- ---------- ---------- ---------- bmy_04728T0/1-754 ---------- ----CSTSK- ---------- ---------- ---------- BACU003186/1-1015 SRRSSQRAVL LVGLCDSGKT LLFVRLLTGL YRDTQTSITD SSAVYRVNNN 901 950 ENSP00000385834/1-698 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009564/1-704 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007358/1-700 ---------- ---------- ---------- ---------- ---------- bmy_04728T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU003186/1-1015 RGTSLTLIDL PGHESLRLQF LERFKASARA IVFVVDSAAF QREVKDVAEF 951 1000 ENSP00000385834/1-698 ---------- ------LLEA CTFRRP---- ---------- ---------- ENSBTAP00000009564/1-704 ---------- ------LLEA CTFHKP---- ---------- ---------- ENSTTRP00000007358/1-700 ---------- ------LLEA CSFHRP---- ---------- ---------- bmy_04728T0/1-754 ---------- ------LLEV CNFHKV---- ---------- ---------- BACU003186/1-1015 LYQVLLDSIG LKNTPSFLIA CNKQDITMAK SAKLIQQQLE KEINTLRVTR 1001 1050 ENSP00000385834/1-698 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009564/1-704 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007358/1-700 ---------- ---------- ---------- ---------- ---------- bmy_04728T0/1-754 ---------- ---------- ---------- ---------- ---------- BACU003186/1-1015 SAAPSILDSS STATAQLGKK GKEFEFSQLP LKVEFLECSA KGGRGDTGSA 1051 1100 ENSP00000385834/1-698 ---------- --- ENSBTAP00000009564/1-704 ---------- --- ENSTTRP00000007358/1-700 ---------- --- bmy_04728T0/1-754 ---------- --- BACU003186/1-1015 DIQDLEKWLA KIA