KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:51 2014 Check: 00 .. Name: ENSP00000357909/1-962 Len: 998 Check: 183 Weight: 1.00 Name: ENSBTAP00000009575/1-958 Len: 998 Check: 9353 Weight: 1.00 Name: ENSTTRP00000006626/1-966 Len: 998 Check: 7693 Weight: 1.00 Name: bmy_11127T0/1-965 Len: 998 Check: 2624 Weight: 1.00 Name: BACU007242/1-711 Len: 998 Check: 3810 Weight: 1.00 // 1 50 ENSP00000357909/1-962 MPRAPHFMPL LLLLLLLSLP HTQAAFPQDP LPLLISDLQG TSPLSWFRGL ENSBTAP00000009575/1-958 MPRAPHFMP- LLLLLLLSIP HTQAAFPQDP LPLLTSDLHG ISPLSWFRGL ENSTTRP00000006626/1-966 MPRDPRFMPL LLLLLLLSLP HTQAAFPQDP LPLLTSDLQG ISPLSWFRGL bmy_11127T0/1-965 MPRAPRFMPL LLLLLLLSLP HTQAAFPQDP LPLLTSDLQG ISPLSWFRGL BACU007242/1-711 -------MPL LLLLLLLSLP HTQAAFPQDP LPLLTSDLQG ISPLSWFRGL 51 100 ENSP00000357909/1-962 EDDAVAAELG LDFQRFLTLN RTLLVAARDH VFSFDLQAEE EGEGLVPNKY ENSBTAP00000009575/1-958 EDDAVVAELG LDFQRFLTLN RTLLVAARDH VFSFDLQAQE EGERLMPNKY ENSTTRP00000006626/1-966 EDDAVVAELG LDFQRFLTLN RTLLVAARDH VFSFDLQAQE EGEGLVPNKY bmy_11127T0/1-965 EDDAVVAELG LDFQRFLTLN RTLLVAARDH VFSFDLQAQE EGEGLVPNKY BACU007242/1-711 EDDAVVAELG LDFQRFLTLN RTLLVAARDH VFSFDLQAQE EGEGLVPNKY 101 150 ENSP00000357909/1-962 LTWRSQDVEN CAVRGKLTDE CYNYIRVLVP WDSQTLLACG TNSFSPVCRS ENSBTAP00000009575/1-958 LTWRSQDVEN CAVRGKLTDE CYNYIRVLVP WDSQTLLACG TNSFSPVCRS ENSTTRP00000006626/1-966 LTWRSQDMEN CAVRGKLTDE CYNYIRVLVP WDSQTLLACG TNSFSPVCRS bmy_11127T0/1-965 LTWRSQDMEN CAVRGKLTDE CYNYIRVLVP WDSQTLLACG TNSFSPVCRS BACU007242/1-711 LTWRSQDMEN CAVRGKLTDE CYNYIRVLVP WDSQTLLACG TNSFSPVCRS 151 200 ENSP00000357909/1-962 Y--------- ---------- ---------- GITSLQQEGE ELSGQARCPF ENSBTAP00000009575/1-958 Y--------- ---------- ---------- GITSLQQEGE ELSGQARCPF ENSTTRP00000006626/1-966 Y--------- ---------- ---------- GITSLQQEGE ELSGQARCPF bmy_11127T0/1-965 YGVQRRGRGI RTGVGEEPKL GNQFSGDGPA GITSLQQEGE ELSGQARCPF BACU007242/1-711 YGVQRRGRGI RTGVGEEPKL GNQFSGDGPA GITSLQQEGE ELSGQARCPF 201 250 ENSP00000357909/1-962 DATQSNVAIF AEGSLYSATA ADFQASDAVV YRSLGPQPPL RSAKYDSKWL ENSBTAP00000009575/1-958 DATQSNVAVF AEGSLYSATA ADFQASDAVV YRSLGPQPPL RSAKYDSKWL ENSTTRP00000006626/1-966 DATQSNVAVF AEGSLYSATA ADFQASDAVV YRSLGPQPPL RSAKYDSKWL bmy_11127T0/1-965 DATQSNVAVF AEGSLYSATA ADFQASDAVV YRSLGPQPPL RSAKYDSKWL BACU007242/1-711 DATQSNVAVF AEGSLYSATA ADFQASDAVV YRSLGPQPPL RSAKYDSKWL 251 300 ENSP00000357909/1-962 REPHFVQALE HGDHVYFFFR EVSVEDARLG RVQFSRVARV CKRDMGGSPR ENSBTAP00000009575/1-958 REPHFVHALE HGDHVYFFFR EVSVEDARLG RVQFSRVARV CKRDMGGSPR ENSTTRP00000006626/1-966 REPHFVHALE HGDHVYFFFR EVSVEDARLG RVQFSRVARV CKRDMGGSPR bmy_11127T0/1-965 REPHFVHALE HGDHVYFFFR EVSVEDARLG RVQFSRVARV CKRDMGGSPR BACU007242/1-711 REPHFVHALE HGDHVYFFFR EVSVEDARLG RVQFSRVARV CKRDMGGSPR 301 350 ENSP00000357909/1-962 ALDRHWTSFL KLRLNCSVPG DSTFYFDVLQ ALTGPVNLHG RSALFGVFTT ENSBTAP00000009575/1-958 ALDRHWTSFL KLRLNCSVPG DSTFYFDVLQ ALTGPVNLYG RSALFGVFTT ENSTTRP00000006626/1-966 ALDRHWTSFL KLRLNCSVPG DSTFYFDVLQ ALTGPVNLYG RSALFGVFTT bmy_11127T0/1-965 ALDRHWTSFL KLRLNCSVPG DSTFYFDVLQ ALTGPVNLYG RSALFGVFTT BACU007242/1-711 ALDRHWTSFL KLRLNCSVPG DSTFYFDVLQ ALTGPVNLYG RSALFGVFTT 351 400 ENSP00000357909/1-962 QTNSIPGSAV CAFYLDEIER GFEGKFKEQR SLDGAWTPVS EDRVPSPRPG ENSBTAP00000009575/1-958 QTNSIPGSAV CAFYLDDIER GFEGKFKEQR SLDGAWTPVS EDRVPSPRPG ENSTTRP00000006626/1-966 QTNSIPGSAV CAFYLDDIER GFEGKFKEQR SLDGAWTPVS EDRVPSPRPG bmy_11127T0/1-965 QTNSIPGSAV CAFYLDDIER GFEGKFKEQR SLDGAWTPVS EDRVPSPRPG BACU007242/1-711 QTNSIPGSAV CAFYLDDIER GFEGKFKEQR SLDGAWTPVS EDRVPSPRPG 401 450 ENSP00000357909/1-962 SCAGVGGAAL FSSSRDLPDD VLTFIKAHPL LDPAVPPVTH QPLLTLTSRA ENSBTAP00000009575/1-958 SCAGVGVAAL FPSSRDLPDD VLTFIKAHPL LDPAVPPATH QPLLTLTSRA ENSTTRP00000006626/1-966 SCAGVGVAAL FPSSRDLPDD VLTFIKAHPL LDPAVPPATH QPLLTFTSRA bmy_11127T0/1-965 SCAGVGVAAL FPSSRDLPDD VLTFIKAHPL LDPAVPPATH QPLLTLTSRA BACU007242/1-711 SCAGVGVAAL FPSSQDLPDD VLTFIKAHPL LDPAVPPATH QPLLTLTSRA 451 500 ENSP00000357909/1-962 LLTQVAVDGM AGPHSNITVM FLGSNDGTVL KVLTPGGRSG GPEPILLEEI ENSBTAP00000009575/1-958 LLTQVAVDGM AGPYSNITVL FLGSNDGTVL KVLPPGGQSG GSEPILLEEI ENSTTRP00000006626/1-966 LLTQVAVDGM AGPYSNTTVL FLGSNDGTVL KVLPPWGQSG GPEPILLEEI bmy_11127T0/1-965 LLTQVAVDGM AGPYSNTTVL FLGSNDGTVL KVLPPWGQSG GPEPILLEEI BACU007242/1-711 LLTQVAVDGM AGPYSNTTVL FLGSNDGTVL KVLPPWGQSG GPEPILLEEI 501 550 ENSP00000357909/1-962 DAYSPARCSG KRTAQTARRI IGLELDTEGH RLFVAFSGCI VYLPLSRCAR ENSBTAP00000009575/1-958 DAYSPSRCSG KRAAQTARRV IGLELDTEGH RLFVAFSGCI IYLPLSRCAQ ENSTTRP00000006626/1-966 DAYSPSRCSG KRAAQTARRV TGLELDTEGH RLFVAFSGCI IYLPLSRCAR bmy_11127T0/1-965 DAYSPSRCSG KRAAQTARRV IGLELDTEGH RLFVAFSGCI IYLPLSRCAR BACU007242/1-711 DAYSPSRCSG KRAAQTARRV IGLELDTEGH RLFVAFSGCV IYLPLSRCAR 551 600 ENSP00000357909/1-962 HGACQRSCLA SQDPYCGWHS SRGCVDIRGS GGTDVDQAGN QESMEHGDCQ ENSBTAP00000009575/1-958 HGACRRSCLA SQDPYCGWDS SRGCVDIRAP GGIDVDPTGN QESMEHDDCQ ENSTTRP00000006626/1-966 HGACRRSCLA SQDPYCGWDS SRGCVDIRGP GGIDVHPAGN QESMEHDDCQ bmy_11127T0/1-965 HGACRRSCLA SQDPYCGWDS SRGCVDIRGP GGIDVHPAGN QESMEHDDCQ BACU007242/1-711 HGACRRSCLA SQDPYCGWDS SRGCVDIRGP GGIDVHPAGN QESMEHDDCQ 601 650 ENSP00000357909/1-962 DGATGSQSGP GDSAYVLPGP GPSPGTPSPP SDAHPRPQSS TLGVHTRGVR ENSBTAP00000009575/1-958 DGATGSQSGT GDSTYVLLSP GPSPETPSPP SDAHPRPQSS TLGAHTQGVR ENSTTRP00000006626/1-966 DGATGSQSGT GDSAYVLLSP GPSPETPSPP SDAHPRPQSS TLGAHTQGVR bmy_11127T0/1-965 DGATGSQSGT GDSAY----- ---------- ---------- -------GVR BACU007242/1-711 DGATGSQSGT GDSAY----- ---------- ---------- -------G-- 651 700 ENSP00000357909/1-962 RDLPPASASR SVPIPLLLAS VAAAFALGAS VSGLLVSCAC RRAHRRRGKD ENSBTAP00000009575/1-958 RDLPPASASR SVPIPLLLAC VAAAFALGAS VSGLLVSCAC RRAHRRRSKD ENSTTRP00000006626/1-966 RDLPPASVSR AVPIPLLLAC VAAAFALSAS VSGLLVSCAC RRAHRRRSKD bmy_11127T0/1-965 RDLPPDSVSR SVPIPLLLAC VAAAFALGAS VSGLLVSCAC RRAHRRRSKD BACU007242/1-711 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000357909/1-962 IETPGLPRPL SLRSLARLHG GGPEPPPPSK DGDAVQTPQL YTTFLPPPEG ENSBTAP00000009575/1-958 IESAGIPRPL SLRSLARLHG AGPEPPPPSK DGEGAQTPQL YTTFLPPPEG ENSTTRP00000006626/1-966 IETAGLPRPL SLRSLARLHG AGPEPQPTSK DGGGAQTPQL YTTFLPPPEG bmy_11127T0/1-965 IETAGLPRPL SLRSLARLHG AGPEPQPTSK DGEGAQTPQL YTTFLPPPEG BACU007242/1-711 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000357909/1-962 VPPPELACLP TPESTPELPV KHLRAAGDPW EWNQNRNNAK EGPGRSRGGH ENSBTAP00000009575/1-958 VPPPELACLP TPESTPELPV KHLRHAGGPW EWNQNGNNAK EGRSRARGGN ENSTTRP00000006626/1-966 VPPPELACLP TPESTPELPV KHLRHAGGPW EWNQNGNNAK EGRGRARSGN bmy_11127T0/1-965 VPPPELACLP TPESTPELPV KHLRHAGCPW EWNQNGNNAK EGRGRARGGN BACU007242/1-711 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000357909/1-962 AAGGPAPRVL VRPPPPGCPG QAVEVTTLEE LLRYLHGPQP PRKGAEPP-- ENSBTAP00000009575/1-958 AAGGAAPRVL VKPPPPGCPG QAVEVTTLEE LLRYLHGPQA PRKEAEPPVA ENSTTRP00000006626/1-966 TAGGPAPRVL VRPPPPGCPG QAVEVTTLEE LLRYLHGPQP PRKEVEPPAA bmy_11127T0/1-965 TAGGPAPRVL VRPPPPGCPG QAVEVTTLEE LLRYLHGPQP PRKEAEPPAA BACU007242/1-711 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000357909/1-962 APLTSRALPP EPAPA----L LGGPSPRPHE CASPLRLDVP PEGRCASAPA ENSBTAP00000009575/1-958 APFTSRPLPP EPSPT----L FAGPSLLPRD CAPPRRLDVP PEGKCPAPAA ENSTTRP00000006626/1-966 APFTSRALPP EPAPA--PTL FAGPCLLPRD CATPRRLDVP PEGKRPAPAT bmy_11127T0/1-965 APFTSRALPP EPAPAPTPTL FAGPSLLPRD CATPRRLDVP PEGKRPAPAT BACU007242/1-711 ---------- ---------- ---------- ---------- -----PAPPT 901 950 ENSP00000357909/1-962 RPALSAPAPR LGVGGGRRLP FSGHRAPPAL LTRVPSGGPS RYSGGPGKHL ENSBTAP00000009575/1-958 RPALSAPAPR LGVGGSRKLP FSSHRAPPAL LTRVPSGGPS RYSGGAGRHL ENSTTRP00000006626/1-966 RPALSAPAPR LGVGGSRRLP FSTHRAPPAL LTRVPSGGPS RYSGGAGRHL bmy_11127T0/1-965 RPAVSAPAPR LGVGGSRRLP FSTHRAPPAL LTRVPSGGPS RYSGGAGRHL BACU007242/1-711 RPALSAPAPR LGVGGSRRLP FSTHRAPPAL LTRVPSGGPS RYSGGVGRHL 951 1000 ENSP00000357909/1-962 LYLGRPEGYR GRALKRVD-V EKPQLSLKPP LVGPSSRQAV PNGGRFNF ENSBTAP00000009575/1-958 LYLGRPEGHR GRALKRVEGR EAPGAP---- --EASLCAAV PDGSHFNF ENSTTRP00000006626/1-966 LYLGRPEGHR GRALKRVD-V EKPQVPLKPP LVGPSSQSAV PSGNHFNF bmy_11127T0/1-965 LYLGRPEGHR GRALKRVD-V EKPQVPLKPP LVGPSSQPAV PSGNHFNF BACU007242/1-711 LYLGRPEGHR GRALRRVD-V EKPQVPLKPP LVGPSSQPAV PSGNHFNF