KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:55 2014 Check: 00 .. Name: bmy_20737T0/1-666 Len: 881 Check: 1656 Weight: 1.00 Name: BACU012620/1-861 Len: 881 Check: 8223 Weight: 1.00 Name: ENSP00000309457/1-854 Len: 881 Check: 6791 Weight: 1.00 Name: ENSTTRP00000003999/1-852 Len: 881 Check: 827 Weight: 1.00 Name: ENSBTAP00000009615/1-854 Len: 881 Check: 6839 Weight: 1.00 // 1 50 bmy_20737T0/1-666 ---------- -----MSVSK RAVSPSNSRS GYSGVTLPV- ---------- BACU012620/1-861 MAEAEEQETG SLEESTDESE EEESEEEPKL KYERLSNGVT EILQKDAASC ENSP00000309457/1-854 MAEAEEQETG SLEESTDESE EEESEEEPKL KYERLSNGVT EILQKDAASC ENSTTRP00000003999/1-852 MAEAEEQETG SLEESTDESE EEESEEEPKL KYERLSNGVT EILQKDAASC ENSBTAP00000009615/1-854 MAEAEEQETG SLEESTDESE EEESEEEPKL KYERLSNGVT EILQKDAASC 51 100 bmy_20737T0/1-666 ---------- --------LI KAPVSLPEIF PVTPLTSSR- -------HCT BACU012620/1-861 MTVHDKFLAL GTHYGKVYLL DVQGNITQKF DISPVKINQI SLDESGEHMG ENSP00000309457/1-854 MTVHDKFLAL GTHYGKVYLL DVQGNITQKF DVSPVKINQI SLDESGEHMG ENSTTRP00000003999/1-852 MTVHDKFLAL GTHYGKVYLL DVQGNITQKF DISPVKINQI SLDESGEHMG ENSBTAP00000009615/1-854 MTVHDKFLAL GTHYGKVYLL DVQGNITQKF DVSPVKINQV SLDESGEHMG 101 150 bmy_20737T0/1-666 ECHS------ ---------- ---------- AIHLT----- ---------E BACU012620/1-861 VCSEDGKVQV FGLYSGEEFH ETFDCPIKII AVHPHFVRSS CKQFVTGGKK ENSP00000309457/1-854 VCSEDGKVQV FGLYSGEEFH ETFDCPIKII AVHPHFVRSS CKQFVTGGKK ENSTTRP00000003999/1-852 VCSEDGKVQV FGLYSGEEFH ETFDCPIKIV AVHPHFVRSS C-QFVTGG-K ENSBTAP00000009615/1-854 VCAEDGKVQV FGLYSGEEFH ETFDCPIKII AVHPHFVRSS CKQFVTGGKK 151 200 bmy_20737T0/1-666 LLLFERSWMS RWKSSVLHEG EGNIRSVKWR GHLIAWANNM ICSVKERHAS BACU012620/1-861 LLLFERSWMS RWKSSVLHEG EGNIRSVKWR GHLIAWANNM GVKIFDITSK ENSP00000309457/1-854 LLLFERSWMN RWKSAVLHEG EGNIRSVKWR GHLIAWANNM GVKIFDIISK ENSTTRP00000003999/1-852 LLLFERSWMS RWKSSVLHEG EGNIRSVKWR GHLIAWANNM GVKIFDITSK ENSBTAP00000009615/1-854 LLLFERSWMS RWKSSVLHEG EGNIRSVKWR GHLIAWANNM GVKIFDITSK 201 250 bmy_20737T0/1-666 E-MRDLPSRY VEIGRTGEAS PEPSVPGYML HVLVSEHVVV GSSLRMCFVR BACU012620/1-861 QRITNVPRDD ISL------R PDMYPCSLCW KDNVTLIIGW GTSVKICSVK ENSP00000309457/1-854 QRITNVPRDD ISL------R PDMYPCSLCW KDNVTLIIGW GTSVKVCSVK ENSTTRP00000003999/1-852 QRITNVPRDD ISL------R PDMYPCSLCW KDSVTLIIGW GPSVKICSVK ENSBTAP00000009615/1-854 QRITNVPRDD ISL------R PDMYPCSLCW KDNVTLIIGW GTSVKICSVK 251 300 bmy_20737T0/1-666 ILITSPLYQK LFPSAWIRIF SSGSAVSQFE TEFYISGLAP LCDQLVVLSY BACU012620/1-861 ERHASEM--R DLPSRYVEI- -----VSQFE TEFYTSGLAP LCDQLVVLSY ENSP00000309457/1-854 ERHASEM--R DLPSRYVEI- -----VSQFE TEFYISGLAP LCDQLVVLSY ENSTTRP00000003999/1-852 ERHASEM--R DLPSRYVEI- -----VSQFE TEFYISGLAP LCDQLVVLSY ENSBTAP00000009615/1-854 ERHANEM--R DLPSRYVEI- -----VSQFE TEFYISGLAP LCDQLVVLSY 301 350 bmy_20737T0/1-666 VKEVSEKT-- ---------- ---------- ---------- ---------- BACU012620/1-861 VKEVSEKTER EYCARPRLDI IQPLSETCEE ISSDALTVRG FQENECRDYH ENSP00000309457/1-854 VKEISEKTER EYCARPRLDI IQPLSETCEE ISSDALTVRG FQENECRDYH ENSTTRP00000003999/1-852 VKEVSEKTER EYCARPRLDI IQPLSETCEE ISSDALTVRG FQENECRDYH ENSBTAP00000009615/1-854 VKEVSEKTER EYCARPRLDI IQPLSETCEE ISSDALTVRG FQENECRDYH 351 400 bmy_20737T0/1-666 ---------- ---------- ---------- ---------- EALMAAEISQ BACU012620/1-861 LEYSEGESLF YIVSPRDVVV AKERDQDDHI DWLLEKKKYE EALMAAEISQ ENSP00000309457/1-854 LEYSEGESLF YIVSPRDVVV AKERDQDDHI DWLLEKKKYE EALMAAEISQ ENSTTRP00000003999/1-852 LEYSEGESLF YIVSPRDVVV AKERDQDDHI DWLLEKKKYE EALMAAEISQ ENSBTAP00000009615/1-854 LEYSEGESLF YIVSPRDVVV AKERDQDDHI DWLLEKKKYE EALMAAEISQ 401 450 bmy_20737T0/1-666 KNIKRHKILD IGLAYINHLV EKGEYDIAAR KCQKILGKNA ALWEYEVYKF BACU012620/1-861 KNIKRHKILD IGLAYINHLV EKGEYDIAAR KCQKILGKNA ALWEYEVYKF ENSP00000309457/1-854 KNIKRHKILD IGLAYINHLV ERGDYDIAAR KCQKILGKNA ALWEYEVYKF ENSTTRP00000003999/1-852 KNIKRHKILD IGLAYINHLV EKGEYDIAAR KCQKILGKNA ALWEYEVYKF ENSBTAP00000009615/1-854 KNIKRHKILD IGLAYINHLV ARGEYDIAAR KCQKILGKNA ALWEYEVYKF 451 500 bmy_20737T0/1-666 KEIGQLKAIS PYLPRGDPVL KPLIYEMILH EFLESDYEGF ATLIREWPGD BACU012620/1-861 KEIGQLKAIS PYLPRGDPVL KPLIYEMILH EFLESDYEGF ATLIREWPGD ENSP00000309457/1-854 KEIGQLKAIS PYLPRGDPVL KPLIYEMILH EFLESDYEGF ATLIREWPGD ENSTTRP00000003999/1-852 KEIGQLKAIS PYLSRGDPVL KPLIYEMILH EFLESDYEGF ATLIREWPGD ENSBTAP00000009615/1-854 KEIGQLKAIS PYLPRGDPVL KPLIYEMILH EFLESDYEGF ATLIREWPGD 501 550 bmy_20737T0/1-666 LYNNSVIVQA VRDHLKKDSQ NRTLLKTLAE LYTYDKNYGN ALEIYLTLRH BACU012620/1-861 LYNNSVIVQA VRDHLKKDSQ NRTLLKTLAE LYTYDKNYGN ALEIYLTLRH ENSP00000309457/1-854 LYNNSVIVQA VRDHLKKDSQ NKTLLKTLAE LYTYDKNYGN ALEIYLTLRH ENSTTRP00000003999/1-852 LYNNSVIVQA VRDHLKKDSQ NRTLLKTLAE LYTYDKNYGN ALEIYLTLRH ENSBTAP00000009615/1-854 LYNNSVIVQA VRDHLKKDSQ NRTLLKTLAE LYTYDKNYGN ALEIYLTLRH 551 600 bmy_20737T0/1-666 KD-------- ---------- ---------K AVDMLLDNED KISIKKVVEE BACU012620/1-861 KDVFQLIHKH NLFSSIKDKI VLLMDFDSEK AVDMLLDNED KISITKVVEE ENSP00000309457/1-854 KDVFQLIHKH NLFSSIKDKI VLLMDFDSEK AVDMLLDNED KISIKKVVEE ENSTTRP00000003999/1-852 KDVFQLIHKH NLFSSIKDKI VLLMDFDSEK AVDMLLDNED KISIKKVVEE ENSBTAP00000009615/1-854 KDVFQLIHKH NLFSSIKDKI VLLMDFDSEK AVDMLLDNED KISIKKVVEE 601 650 bmy_20737T0/1-666 LEDRPELQHV YLHKLFKRDH HKGQRYHEKQ ISLYAEFDRP NLLPFLRDSI BACU012620/1-861 LEDRPELQHV YLHKLFKRDH HKGQRYHEKQ ISLYAEFDRP NLLPFLRDSI ENSP00000309457/1-854 LEDRPELQHV YLHKLFKRDH HKGQRYHEKQ ISLYAEYDRP NLLPFLRDST ENSTTRP00000003999/1-852 LEDRPELQHV YLHKLFKRDH HKGQRYHEKQ ISLYAEFDRP NLLPFLRDSI ENSBTAP00000009615/1-854 LEDRPELQHV YLHKLFKRDH HKGQRYHEKQ ISLYAEFDRP NLLPFLRDSI 651 700 bmy_20737T0/1-666 HCPLEKALEI CQQRNFVEET VYLLSRMGNS RSALKMIMEE LHDVDKAIEF BACU012620/1-861 HCPLEKALEI CQQRNFVAET VYLLSRMGNS RSALKMIMEE LHDVDKAIEF ENSP00000309457/1-854 HCPLEKALEI CQQRNFVEET VYLLSRMGNS RSALKMIMEE LHDVDKAIEF ENSTTRP00000003999/1-852 HCPLEKALEI CQQRNFVEET VYLLSRMGNS RSALKMIMEE LHDVDKAIDF ENSBTAP00000009615/1-854 HCPLEKALEI CQQRNFVEET VYLLSRMGNS RSALKMIMEE LHDVDKAIEF 701 750 bmy_20737T0/1-666 AKEQDDGELW EDLILYSIDK PPFITGLLNN IGTHVDPILL IHRIKEGMEI BACU012620/1-861 AKEQDDGELW EDLILYSIDK PPFITGLLNN IGTHVDPILL IHRIKEGMEI ENSP00000309457/1-854 AKEQDDGELW EDLILYSIDK PPFITGLLNN IGTHVDPILL IHRIKEGMEI ENSTTRP00000003999/1-852 AKEQDDGELW EDLILYSIDK PPFITGLLNN IGTHVDPILL IHRIKEGMEI ENSBTAP00000009615/1-854 AKEQDDAELW EDLILYSIDK PPFITGLLNN IGTHVDPILL IHRIKEGMEI 751 800 bmy_20737T0/1-666 PNLRDSLVKI LQDYNLQILL REGCKKILVA DSLSLLKKMH RTQMKGILVD BACU012620/1-861 PNLRDSLVKI LQDYNLQILL REGCKKILVA DSLSLLKKMH RTQMKGILVD ENSP00000309457/1-854 PNLRDSLVKI LQDYNLQILL REGCKKILVA DSLSLLKKMH RTQMKGVLVD ENSTTRP00000003999/1-852 PNLRDSLVKI LQDYNLQILL REGCKKILVA DSLSLLKKMH RTQMKGILVD ENSBTAP00000009615/1-854 PNLRDSLVKI LQDYNLQILL REGCKKILVA DSLSLLKKMH RTQMKGILVD 801 850 bmy_20737T0/1-666 EENICESCLS PVLPSDAAKP FSAVVFHCRH MFHKECLPMT SMNS-----P BACU012620/1-861 EENICESCLS PILPSDAAKP FSAVVFHCRH MFHKECLPMT SMVSWLLGHQ ENSP00000309457/1-854 EENICESCLS PILPSDAAKP FSVVVFHCRH MFHKECLPMP SMNS-----A ENSTTRP00000003999/1-852 EENICESCLS PILPSDAAKP FSMVVFHCRH MFHKECLPMT SMNS-----P ENSBTAP00000009615/1-854 EENICESCLS PILPSDAAKP FSMVVFHCRH MFHKECLPVP SMTS-----P 851 900 bmy_20737T0/1-666 VQFCNICSAK HRGPGSAILE MKK------- - BACU012620/1-861 QLERNWCSQR D------VLK MISTVRVSAV I ENSP00000309457/1-854 AQFCNICSAK NRGPGSAILE MKK------- - ENSTTRP00000003999/1-852 VQFCNICSAK HRGPGSAILE MKK------- - ENSBTAP00000009615/1-854 AQFCNICSAK HRGPGSAILE MKK------- -