KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:55 2014 Check: 00 .. Name: ENSBTAP00000009616/1-331 Len: 336 Check: 637 Weight: 1.00 Name: ENSP00000417583/1-336 Len: 336 Check: 9157 Weight: 1.00 Name: bmy_16841T0/1-174 Len: 336 Check: 3378 Weight: 1.00 Name: BACU014785/1-246 Len: 336 Check: 2735 Weight: 1.00 Name: ENSTTRP00000013643/1-335 Len: 336 Check: 7046 Weight: 1.00 // 1 50 ENSBTAP00000009616/1-331 MKTLVRHGLA VCLALTTMCT SLLLVYSSLG GQKERPP--- --QQQQQQQA ENSP00000417583/1-336 MKTLMRHGLA VCLALTTMCT SLLLVYSSLG GQKERPPQQQ QQQQQQQQQA bmy_16841T0/1-174 ---------- ---------- ---------- ---------- ---------- BACU014785/1-246 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013643/1-335 MKTLVXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 51 100 ENSBTAP00000009616/1-331 AATLSSRRSA ESSPPPRPET PAGPRPLDGY LGVVDHKPLK MHCRDCALVT ENSP00000417583/1-336 SATGSSQPAA ESSTQQRPGV PAGPRPLDGY LGVADHKPLK MHCRDCALVT bmy_16841T0/1-174 --MGSFSPSL Q--------- ---------- -------PLK MHCRDCALVT BACU014785/1-246 ---------- ---------- ---------- ---------- MHCRDCALVT ENSTTRP00000013643/1-335 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXPLK MHCRDCALVT 101 150 ENSBTAP00000009616/1-331 SSGQLLRSRQ GAQIDQTECV IRMNDAPTRG YGRDVGNRTS LRVIAHSSIQ ENSP00000417583/1-336 SSGHLLHSRQ GSQIDQTECV IRMNDAPTRG YGRDVGNRTS LRVIAHSSIQ bmy_16841T0/1-174 SSGHLLRSLR GPRIDQTECV IRMNDAPTRG YGHDVGNRTS LRVIAHSSLQ BACU014785/1-246 SSGHLLRSLR GPRIDQTECV IRMNDAPTRG YGHDVGNRTS LRVIAHSSLQ ENSTTRP00000013643/1-335 SSGHLLRSLR GPRIDQTECV IRMNDAPTRG YGHDVGNRTS LRVIAHSSLQ 151 200 ENSBTAP00000009616/1-331 RILRNRHDLL NVSQGTVFIF WGPSSYMRRD GKGQVYNNLQ LLSQVLPRLK ENSP00000417583/1-336 RILRNRHDLL NVSQGTVFIF WGPSSYMRRD GKGQVYNNLH LLSQVLPRLK bmy_16841T0/1-174 RILRNRHDLL NVSQGTVFIF WGPSSYMRRD GKGRVYNNLQ LLSQVLPRLK BACU014785/1-246 RILRNRHDLL NVSQGTVFIF WGPSSYMRRD GKGQVYNNLQ LLSQVLPRLK ENSTTRP00000013643/1-335 RILRNRHDLL NVSQGTVFIF WGPSSYMRRD GKGQVYNNLQ LLSQVLPRLA 201 250 ENSBTAP00000009616/1-331 AFMIARHKML QFDELFKRET GKDRKISNTW LSTGWFTMTI ALELCDRINV ENSP00000417583/1-336 AFMITRHKML QFDELFKQET GKDRKISNTW LSTGWFTMTI ALELCDRINV bmy_16841T0/1-174 AFMITRHKML QFDELFKRET GKD------- -STGWFTMTI ALELCDRISV BACU014785/1-246 AFMITRHKML QFGELFKRET GKDRKISNTW LSTGWFTMTI ALELCDRIHV ENSTTRP00000013643/1-335 -FMITRHKML QFDELFKRET GKDRKISNTW LSTGWFTMTI ALELCDRINV 251 300 ENSBTAP00000009616/1-331 YGMVPPDFCR DPNHLSVPYH YYEPFGPDEC TMYLSHERGR KGSHHRFITE ENSP00000417583/1-336 YGMVPPDFCR DPNHPSVPYH YYEPFGPDEC TMYLSHERGR KGSHHRFITE bmy_16841T0/1-174 YGMVPPDFCR ---------- ---------- ---------- ---------- BACU014785/1-246 YGMVPPDFCR DPNHPSVPYH YYEPFGPDEC TMYLSHERGR KGSHHRFITE ENSTTRP00000013643/1-335 YGMVPPDFCR DPDHPSVPYH YYEPLGPDEC TMYLSHERGR KGSHHRFITE 301 350 ENSBTAP00000009616/1-331 KRVFKNWART FNIHFFQPDW KPESLANSHS ENKPVF ENSP00000417583/1-336 KRVFKNWART FNIHFFQPDW KPESLAINHP ENKPVF bmy_16841T0/1-174 ---------- ---------- ---------- ------ BACU014785/1-246 KRVFKNWART FNIHFFQPDW KPESLAISHP ENKPVF ENSTTRP00000013643/1-335 KRVFKNWAQT FNIHFFQPDW KPESLAISHP ENKPVF