KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:57 2014 Check: 00 .. Name: ENSP00000328169/1-1238 Len: 1289 Check: 2614 Weight: 1.00 Name: ENSBTAP00000009629/1-1081 Len: 1289 Check: 1627 Weight: 1.00 Name: BACU006333/1-957 Len: 1289 Check: 6194 Weight: 1.00 Name: ENSTTRP00000001461/1-1158 Len: 1289 Check: 1530 Weight: 1.00 Name: bmy_17370T0/1-1104 Len: 1289 Check: 7577 Weight: 1.00 // 1 50 ENSP00000328169/1-1238 MRAQGRGRLP RRLLLLLALW VQAARPMGYF ELQLSALRNV NGELLSGACC ENSBTAP00000009629/1-1081 ---------- ---------- ---------- ---------- ---------- BACU006333/1-957 ---------- ---------- --MGR----- -LRRLT---- ---------- ENSTTRP00000001461/1-1158 ---------- ---------- --AARPMGYF ELQLIALRNV NGELLSGACC bmy_17370T0/1-1104 ---------- ---------- --MGR----- -LRWLT---- ---------- 51 100 ENSP00000328169/1-1238 DGDGRTTRAG GCGHDECDTY VRVCLKEYQA KVTPTGPCSY GHGATPVLGG ENSBTAP00000009629/1-1081 ---------- ---------- ---------- ---------- ---------- BACU006333/1-957 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001461/1-1158 DGDGRTTRSG GCGHDECDTY VRVCLKEYQA KVTPTGPCSY GHGATPVLGG bmy_17370T0/1-1104 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000328169/1-1238 NSFYLPPAGA AGDRARARAR AGGDQDPGLV VIPFQFAWPR SFTLIVEAWD ENSBTAP00000009629/1-1081 ---------- ---------- ---------- ---------- ---------- BACU006333/1-957 ----LPP--- ---------- ---------- ---------- ---------- ENSTTRP00000001461/1-1158 NSFYLPPVGA AGDRARARAR AGGDQDPGLV VIPFQFAWPR SFTLIVEAWD bmy_17370T0/1-1104 ----LPP--- ---------- ---------- ---------- ---------- 151 200 ENSP00000328169/1-1238 WDNDTTPNEE LLIERVSHAG MINPEDRWKS LHFSGHVAHL ELQIRVRCDE ENSBTAP00000009629/1-1081 --------EK LLIDRVSHAG MINPEDRWKS LHFSGHVAHL ELKIRVRCDE BACU006333/1-957 ------PQEE LLIERVSHAG MINPEDRWKS LHFSGHVAHL ELKIRVRCDE ENSTTRP00000001461/1-1158 WDNDTTPDEE LLIERVSHAG MINPEDRWKS LHFSGHVAHL ELKIRVRCDE bmy_17370T0/1-1104 ------PQEE LLIERVSHAG MINPEDRWKS LHFSGHVAHL ELKIRVRCDE 201 250 ENSP00000328169/1-1238 NYYSATCNKF CRPRNDFFGH YTCDQYGNKA CMDGWMGKEC KEAV------ ENSBTAP00000009629/1-1081 NYYSPTCNKF CRPRNDFFGH YTCDQYGNKA CMDGWMGKEC KEAV------ BACU006333/1-957 NYYSATCNKF CRPRNDFFGH YTCDQYGNKA CMDGWMGKEC KEAV------ ENSTTRP00000001461/1-1158 NYYSATCNKF CRPRNDFFGH YTCDQYGNKA CMDGWMGKEC KEAV------ bmy_17370T0/1-1104 NYYSATCNKF CRPRNDFFGH YTCDQYGNKA CMDGWMGKEC KEGLDWGSLW 251 300 ENSP00000328169/1-1238 --------CK QGCNLLHGGC TVPGECRCSY GWQGRFCDEC VPYPGCVHGS ENSBTAP00000009629/1-1081 --------CK QGCNLLHGGC SVPGECRCSY GWQGRFCDEC VPYPGCVHGS BACU006333/1-957 --------CK QGCNLLHGGC SVPGECRCSY GWQGRFCDEC VPYPGCVHGS ENSTTRP00000001461/1-1158 --------CK QGCNLLHGGC SVPGECKCSY GWQGRFCDEC VPYPGCVHGS bmy_17370T0/1-1104 ASVSPSVRCA RGWALWREKL L-PLSYRCSY GWQGRFCDEC VPYPGCVHGS 301 350 ENSP00000328169/1-1238 CVEPWQCNCE TNWGGLLCDK DLNYCGSHHP CTNGGTCINA EPDQYRCTCP ENSBTAP00000009629/1-1081 CVEPWQCTCE TNWGGLLCNK DLNYCGSHHP CANGGTCINA EPDQYRCACP BACU006333/1-957 CVEPWQCSCE TNWGGLLCNK DLNYCGSHHP CTNGGTCINA EPDQYRCACP ENSTTRP00000001461/1-1158 CVEPWQCSCE TNWGGLLCNK DLNYCGSHHP CTNGGTCINA EPDQYRCACP bmy_17370T0/1-1104 CVEPWQCSCE TNWGGLLCNK DLNYCGSHHP CTNGGTCINA EPDQYRCACP 351 400 ENSP00000328169/1-1238 DGYSGRNCEK AEHACTSNPC ANGGSCHEVP SGFECHCPSG WSGPTCALDI ENSBTAP00000009629/1-1081 DGYSGKNCER AEHACASNPC ANGGSCHEVP SGFECHCPSG WSGPTCALDI BACU006333/1-957 DGYSGKNCER AEHACASNPC ANGGSCHEVP SGFECHCPSG WSGPTCALDI ENSTTRP00000001461/1-1158 DGYSGKNCER AEHACASNPC ANGGSCHEVP SGFECHCPSG WSGPTCALDI bmy_17370T0/1-1104 DGYSGKNCEQ AEHACASNPC ANGGSCHEVP SGFECHCPSG WSGPTCALDI 401 450 ENSP00000328169/1-1238 DECASNPCAA GGTCVDQVDG FECICPEQWV GATCQLDANE CEGKPCLNAF ENSBTAP00000009629/1-1081 DECASNPCAA GGTCVDQVDG FECVCPEQWV GATCQLDANE CEGKPCLNAF BACU006333/1-957 DECTSNPCAA GGTCVDQVDG FECICPEQWG GATCQLDANE CEGKPCLNAF ENSTTRP00000001461/1-1158 DECTSNPCAA GGTCVDQVDG FECICPEQWG GATCQLDANE CEGKPCLNAF bmy_17370T0/1-1104 DECTSNPCAA GGTCVDQVDG FECICPEQWG GATCQLDANE CEGKPCLNAF 451 500 ENSP00000328169/1-1238 SCKNLIGGYY CDCIPGWKGI NCHINVNDCR GQCQHGGTCK DLVNGYQCVC ENSBTAP00000009629/1-1081 SCKNLIGGYY CDCLPGWKGA NCHINVDDCR GQCQHGGTCK DLVNGYQCVC BACU006333/1-957 SCKNLIGGYY CDCIPGWKGA NCHINVNDCG GQCQHGGTCK DLVNGYQCVC ENSTTRP00000001461/1-1158 SCKNLIGGYY CDCIPGWKGT NCHINVNDCG GQCQHGGTCK DLVNGYQCVC bmy_17370T0/1-1104 SCKNLIGGYY CDCIPGWKGA NCHINVNDCG GQCQHGGTCK DLVNGYQCVC 501 550 ENSP00000328169/1-1238 PRGFGGRHCE LERDECASSP CHSGGLCEDL ADGFHCHCPQ GFSGPLCEVD ENSBTAP00000009629/1-1081 PRGFGGRHCE HQLDECASSP CH-GGLCEDL VDGFRCHCPQ GFSGPLCEVD BACU006333/1-957 PRGFGGRHCE RQLDECASSP CH-VGLCEDL VDGFRCHCPQ GFSGPLCEVH ENSTTRP00000001461/1-1158 PRGFGGRHCE RQLDECASSP CH-VGLCEDL VDGFRCHCPQ GFSGPLCEVD bmy_17370T0/1-1104 PRGFGGRHCE RQLDECASSP CH-VGLCEDL VDGFRCHCPQ GFSGPLCEVH 551 600 ENSP00000328169/1-1238 VDLCEPSPCR NGARCYNLEG DYYCACPDDF GGKNCSVPRE PCPGGACRVI ENSBTAP00000009629/1-1081 IDLCEPSPCQ NGAQCYNLEG DYYCACPDDM GGKNCSEPRA PCPGGACRVV BACU006333/1-957 TDFCQPSPCR DGARCYNLEG DYYY------ ---------- ---------- ENSTTRP00000001461/1-1158 VDFCQPSPCQ NGARCYNLEG DYYCACPEDV GGKNCSEPRE PCPGGACRVV bmy_17370T0/1-1104 VDFCQPSPCQ DGARCYSLEG DYYCACPEDV GGKNCSEPRE PCPGGACRVV 601 650 ENSP00000328169/1-1238 DGCGSDAGPG MPGTAASGVC GPHGRCVSQP GGNFSCICDS GFTGTYCHEN ENSBTAP00000009629/1-1081 DGCGFEAGTR VAGMGPSGVC GPHGHCISQP GGNFSCVCDS GFTGTYCHEN BACU006333/1-957 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001461/1-1158 DGCGFEVGTR VARVAPTGVC GPHGHCISQP GGNFSCVCDS GFTGTYCHEN bmy_17370T0/1-1104 DGCGFEAGTR VARVAPSGVC GPHGHCVSQP GGNFSCVCDS GFTGTYCHEN 651 700 ENSP00000328169/1-1238 IDDCLGQPCR NGGTCIDEVD AFRCFCPSGW EGELCDTNPN DCLPDPCHSR ENSBTAP00000009629/1-1081 IDDCLGQPCR NGGTCIDEVD AFRCFCPSGW EGELCDTNPN DCLPDPCHSR BACU006333/1-957 IDDCLGQPCR NGGTCIDEVD AFRCFCPSGW EGELCDTNPN DCLPDPCHSR ENSTTRP00000001461/1-1158 IDDCLGQPCR NGGTCIDEVD TFRCFCPSGW EGELCDTNPN DCLPDPCHSR bmy_17370T0/1-1104 IDDCLGQPCR NGGTCIDEVD AFRCFCPSGW EGELCDTNPN DCLPDPCHSR 701 750 ENSP00000328169/1-1238 GRCYDLVNDF YCACDDGWKG KTCHSR---- ---------- ---------- ENSBTAP00000009629/1-1081 GRCFDLVNDF YCMCDDGWKG KTCHSR---- ---------- ---------- BACU006333/1-957 GRCYDLVNDF YCACDDGWKG KTSHSREGPR APAALGAARR DAAHCSGRPL ENSTTRP00000001461/1-1158 GRCYDLVNDF YCACDDGWKG KTCHSR---- ---------- ---------- bmy_17370T0/1-1104 GRCYDLVNDF YCACDDGWKG KTCHSR---- ---------- ---------- 751 800 ENSP00000328169/1-1238 -------EFQ CDAYTCSNGG TCYDSGDTFR CACPPGWKGS TCAVAKNSSC ENSBTAP00000009629/1-1081 -------EFQ CDAYTCSNGG TCYDSGDTFR CACPPGWKGS TCTVAKNSSC BACU006333/1-957 SGRVPAGEFQ CDAYTCSNGG TCYDSGDTFR CACPPGWKGS TCTVAKNSSC ENSTTRP00000001461/1-1158 -------EFQ CDAYTCSNGG TCYDSGDTFR CACPPGWKGS TCTVAKSSSC bmy_17370T0/1-1104 -------EFQ CDAYTCSNGG TCYDSGDTFR CACPPGWKGS TCTVAKNSSC 801 850 ENSP00000328169/1-1238 LPNPCVNGGT CVGSGASFSC ICRDGWEGRT CTHNTNDCNP LPCYNGGICV ENSBTAP00000009629/1-1081 LPNPCVNGGT CVGSGDSFSC ICRDGWEGRT CTHNTNDCNP LPCYNGGVCV BACU006333/1-957 LPNPCVNGGT CVGSGDSFSC ICRDGWEGRT CTHNTNDCNP LPCYNGGVCV ENSTTRP00000001461/1-1158 LPNPCGNGGT CVGSGDSFSC ACRDGWEGRT CTHNTNDCNP LPCYNGGVCV bmy_17370T0/1-1104 LPNPCVNGGT CVGSGDSFSC ICRDGWEGRT CTHNTNDCNP LPCYNGGVCV 851 900 ENSP00000328169/1-1238 DGVNWFRCEC APGFAGPDCR INIDECQSSP CAYGATCVDE INGYRCSCPP ENSBTAP00000009629/1-1081 DGVNWFRCEC APGFAGPDCR INIDECQSSP CAYGATCVDE INGYRCSCPP BACU006333/1-957 DGVNWFRCEC APGFAGPDCR INIDECQSSP CAYGATCVDE INGYRCSCPP ENSTTRP00000001461/1-1158 DGVNWFRCEC APGFAGPDCR INIDECQSSP CAYGATCVDE INGYRCSCPP bmy_17370T0/1-1104 DGINWFRCEC APGFAGPDCR INIDECQSSP CAYGATCVDE INGYRCSCPP 901 950 ENSP00000328169/1-1238 GRAGPRCQEV IGFGRSCWSR GTPFPHGSSW VEDCNSCRCL DGRRDCSKVW ENSBTAP00000009629/1-1081 GRSGLRCQEV IVFGRSCWSQ GMPFPHGSSW VEDCNSCRCL DGHRDCSKVW BACU006333/1-957 GRSGPRCQEV IVFGRSCWSQ GVPFPHGSSW VEDCNSCRCL DGRRDCSKVW ENSTTRP00000001461/1-1158 GRAGPRCQEV TVFGRSCWSH VVPFPHGGSW VEDCNSCHCL D-RRACSK-- bmy_17370T0/1-1104 GRSGPRCQEV IVFGRSCWSQ GVPFPHGSSW VEDCNSCRCL DGRRDCSKVW 951 1000 ENSP00000328169/1-1238 CGWKPCLLAG QPEALSAQCP LGQRCLEKAP GQCLRPPCEA WGECGAEEP- ENSBTAP00000009629/1-1081 CGQKPCLLAG RPDALSTQCP PGQQCLEKAP GQCLQPPCAA WGACSAEEPA BACU006333/1-957 CGRKPCLLAG RPDTLSTQCP PGQQCQEKAP GQCLQPPCMA WGECGAEEPW ENSTTRP00000001461/1-1158 ---------- -PST------ ---------- ---------- --------PW bmy_17370T0/1-1104 CGRKPCLLAG RPDTLSTQCP PGQRCQEKAP GQCLQPPCMA WGECGAEEPW 1001 1050 ENSP00000328169/1-1238 -PSTPCLPRS GHLDNNCARL TLHFNRDHVP QGTTVGAICS GIRSLPATRA ENSBTAP00000009629/1-1081 LPSTPCQPRS GHLDNNCARL TLRFNRDQVP QGTTVGTVCS GIRALPATRA BACU006333/1-957 LPSTPCRPRS GHLDNSCARL TLHFNRDQVP QGTTVGAVCS GIRALPATRA ENSTTRP00000001461/1-1158 LPA------S GHLNNNFTRL TCQFTANQVP QGTTVGAVCS GIRALPATRA bmy_17370T0/1-1104 LPSTPCRPRS GHLDNSCARL TLHFNRDQVP QGTTVGAVCS GIRALPATRA 1051 1100 ENSP00000328169/1-1238 VARDRLLVLL CDRASSGASA VEVAVSFSPA -RDLPDSSLI QGAAHAIVAA ENSBTAP00000009629/1-1081 AARDRLLVLL CDRPPSEASA VEVALSFSPA -RDVPDSTLI QSAAHAIVAA BACU006333/1-957 VARDRLLVLL CDRPSSEASA VEVAMSFSPA -RDLPDSSLI QSAAHAIVAA ENSTTRP00000001461/1-1158 VARDRLLVLL CDRPSSEASA VEVAMSFSPA RRDLPDSSLI QSAARAIVAA bmy_17370T0/1-1104 VAWDRRLVLL CDRPSSEASA VEVAMSFSPA -RDLPDSSLI QSAAHAIVAA 1101 1150 ENSP00000328169/1-1238 ITQRGNSSLL LAVTEVKVET VVTGGSSTGL LVPVLCGAFS VLWLACVVLC ENSBTAP00000009629/1-1081 ITQRGNSSLL LAVTEVKVET VVVGRSSTGL LVTVLCGVFS VLCLACVVVC BACU006333/1-957 ITRRGNSSLL LAVTEVKVET VVMGSSSTGK SKDV-CALTK SLSVCSQRWC ENSTTRP00000001461/1-1158 ITRQGNSSLL LAVTEVKVET VVVGSSSTGL LVSVLCGVFS MLCLVCVAVC bmy_17370T0/1-1104 ITRRGNSSLL LAVTEVKVET VVMGSSSTGL LVSVLCGVFS VLCLVCVAVC 1151 1200 ENSP00000328169/1-1238 VWWTRKRRKE RERSRLPREE SANNQWAPLN PIRNPIER-- -PGGHKDVLY ENSBTAP00000009629/1-1081 VWWMRKRRKE RERSRLPREE GPNNQWAPLN PIRNPIERPG GPGGPKDALF BACU006333/1-957 TVY---RIFL YSSLGVLSGS RPKSQWDPWL SVGPP----- ---------- ENSTTRP00000001461/1-1158 VWWTRKRRKE RERSRLPREE GANNQWAPLN PIRNPIER-- -PGGPKDVLF bmy_17370T0/1-1104 VWWTRKRRKE RERSRLPREE GANNQWAPLN PIRNPIER-- -PGGPRDPLF 1201 1250 ENSP00000328169/1-1238 QCKNFTPPPR RADEALPGPA GHAAVREDEE DEDLGRGEED SLEAEKFLSH ENSBTAP00000009629/1-1081 PCKNFTPPPR RVGEALPGPA GA---GEDEE DEEPGRGEDE SPEAEKFLAH BACU006333/1-957 ---------- ---EADSGTR GS---Q---- ---------- ---------- ENSTTRP00000001461/1-1158 PCKNFTPAPR RVGEALPGPA GS---R---E DEEPGRGEDD APEAEKFLSR bmy_17370T0/1-1104 PCKNFTPAPR GAGEALPGPA GS---REDEE DEEPGRGEHD SPEAEKFLSR 1251 1300 ENSP00000328169/1-1238 KFTKDPGRSP GRPAHWASGP KVDNRAVRSI NEARYAGKE ENSBTAP00000009629/1-1081 KFTKDPGRSP GRPARWASGP KVDNRTLGGV SAARRAGRE BACU006333/1-957 ---------- -----WDL-- ---------- --------- ENSTTRP00000001461/1-1158 KFTKDPGCSP GRPALWASGP KVDNRAVGSL GATCRAVRE bmy_17370T0/1-1104 KFTKDPGRSP GRPACWASGP KVDNRAVGSL SAACRAVRE