KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:38:58 2014 Check: 00 .. Name: ENSBTAP00000009631/1-1218 Len: 1251 Check: 5298 Weight: 1.00 Name: ENSP00000254958/1-1218 Len: 1251 Check: 6159 Weight: 1.00 Name: bmy_08568T0/1-1213 Len: 1251 Check: 138 Weight: 1.00 Name: BACU000647/1-1076 Len: 1251 Check: 4397 Weight: 1.00 Name: ENSTTRP00000005880/1-1218 Len: 1251 Check: 7142 Weight: 1.00 // 1 50 ENSBTAP00000009631/1-1218 MRSPRTRGRP GRPLSLLLAL LCALRAKVCG ASGQFELEIL SMENVNGELQ ENSP00000254958/1-1218 MRSPRTRGRS GRPLSLLLAL LCALRAKVCG ASGQFELEIL SMQNVNGELQ bmy_08568T0/1-1213 MRSPRTRGRP GRPLSLLLAL LCALRAKVCG ASGQFELEIL SMQNVNGELQ BACU000647/1-1076 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005880/1-1218 MRSPRTRGRP GRPLSLLLAL LCALRAKVCG ASGQFELEIL SMQNVNGELQ 51 100 ENSBTAP00000009631/1-1218 NGNCCGGSRN PGDRKCSRDE CDTYFKVCLK EYQSRVTAGG PCSFGSGSTP ENSP00000254958/1-1218 NGNCCGGARN PGDRKCTRDE CDTYFKVCLK EYQSRVTAGG PCSFGSGSTP bmy_08568T0/1-1213 NGNCCGGARN PGDRKCSRDE CDTYFKVCLK EYQSRVTAGG PCSFGSGSTP BACU000647/1-1076 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005880/1-1218 NGNCCGGARN PGDRKCSRDE CDTYFKVCLK EYQSRVTAGG PCSFGSGSTP 101 150 ENSBTAP00000009631/1-1218 VIGGNTFDLK ASRGNERNRI VLPFSFAWPR SYTLLVEAWD SSNDTVQPDS ENSP00000254958/1-1218 VIGGNTFNLK ASRGNDRNRI VLPFSFAWPR SYTLLVEAWD SSNDTVQPDS bmy_08568T0/1-1213 VIGGNTFNLK ASRGNERNRI VLPFSFAWPR SYTLLVEAWD SSNDTVQPDS BACU000647/1-1076 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005880/1-1218 VIGGNTFNLK ASRGNERNRI VLPFSFAWPR SYTLLVEAWD SSNDTVQPDS 151 200 ENSBTAP00000009631/1-1218 IIEKASYSGM INPGRQWQTL KQNTGVAHFE YQIRVTCDDY YYGFGCNKFC ENSP00000254958/1-1218 IIEKASHSGM INPSRQWQTL KQNTGVAHFE YQIRVTCDDY YYGFGCNKFC bmy_08568T0/1-1213 IIEKASHSGM INPSRQWQTL KQNTGVAHFE YQIRVTCDDY YYGFGCNKFC BACU000647/1-1076 ---------M INPSRQWQTL KQNTGVAHFE YQIRVTCDDY YYGFGCNKFC ENSTTRP00000005880/1-1218 IIEKASHSGM INPSRQWQTL KQNTGVAHFE YQIRVTCDDY YYGFGCNKFC 201 250 ENSBTAP00000009631/1-1218 RPRDDFFGHY ACDQNGNKTC MEGWMGPECN KAICRQGCSP KHGSCKLPGD ENSP00000254958/1-1218 RPRDDFFGHY ACDQNGNKTC MEGWMGPECN RAICRQGCSP KHGSCKLPGD bmy_08568T0/1-1213 RPRDDFFGHY ACDQNGNKTC MEGWMGPECN KAICRQGCSP KHGSCKLPGD BACU000647/1-1076 RPRDDFFGHY ACDQNGNKTC MEGWMGPECN KAICRQGCSP KHGSCKLPGD ENSTTRP00000005880/1-1218 RPRDDFFGHY ACDQNGNKTC MEGWMGPECN KAICRQGCSP KHGSCKLPGD 251 300 ENSBTAP00000009631/1-1218 CRCQYGWQGL YCDKCIPHPG CVHGTCNEPW QCLCETNWGG QLCDKDLNYC ENSP00000254958/1-1218 CRCQYGWQGL YCDKCIPHPG CVHGICNEPW QCLCETNWGG QLCDKDLNYC bmy_08568T0/1-1213 CRCQYGWQGL YCDKCIPHPG CVHGTCNEPW QCLCETNWGG QLCDKDLNYC BACU000647/1-1076 CRCQYGWQGL YCDKCIPHPG CVHGTCNEPW QCLCETNWGG QLCDKDLNYC ENSTTRP00000005880/1-1218 CRCQYGWQGL YCDKCIPHPG CVHGTCNEPW QCLCETNWGG QLCDKDLNYC 301 350 ENSBTAP00000009631/1-1218 GTHQPCLNGG TCSNTGPDKY QCSCPEGYSG PNCEIAEHAC LSDPCHNRGS ENSP00000254958/1-1218 GTHQPCLNGG TCSNTGPDKY QCSCPEGYSG PNCEIAEHAC LSDPCHNRGS bmy_08568T0/1-1213 GTHQPCLNGG TCSNTGPDKY QCSCPEGYSG PNCEIAEHAC LSDPCHNRGS BACU000647/1-1076 GTHQPCLNGG TCSNTGPDKY QCSCPEGYSG PNCEIAEHAC LSDPCHNRGS ENSTTRP00000005880/1-1218 GTHQPCLNGG TCSNTGPDKY QCSCPEGYSG PNCEIAEHAC LSDPCHNRGS 351 400 ENSBTAP00000009631/1-1218 CKETSLGFEC ECSPGWTGPT CSTNIDDCSP NNCAHGGTCQ DLVNGFQCVC ENSP00000254958/1-1218 CKETSLGFEC ECSPGWTGPT CSTNIDDCSP NNCSHGGTCQ DLVNGFKCVC bmy_08568T0/1-1213 CKETSLGFEC ECSPGWTGPT CSTNIDDCSP NNCSHGGTCQ DLVNGFKCVC BACU000647/1-1076 CKETSLGFEC ECSPGWTGPT CSTNIDDCSP NNCSHGGTCQ DLVNGFKCVC ENSTTRP00000005880/1-1218 CKETSLGFEC ECSPGWTGPT CSTNIDDCSP NNCSHGGTCQ DLVNGFKCVC 401 450 ENSBTAP00000009631/1-1218 PPQWTGKTCQ LDANECEAKP CVNARSCKNL IASYYCNCLP GWMGQNCDIN ENSP00000254958/1-1218 PPQWTGKTCQ LDANECEAKP CVNAKSCKNL IASYYCDCLP GWMGQNCDIN bmy_08568T0/1-1213 PPQWTGKTCQ LDANECEAKP CVNAKSCKNL IASYYCDCLP GWMGQNCDIN BACU000647/1-1076 PPQWTGKTCQ LDANECEAKP CVNAKSCKNL IASYYCDCLP GWMGQNCDIN ENSTTRP00000005880/1-1218 PPQWTGKTCQ LDANECEAKP CVNAKSCKNL IASYYCDCLP GWMGQNCDIN 451 500 ENSBTAP00000009631/1-1218 INDCVGQCQN DASCRDLVNG YRCICPPGYA GDHCETDIDE CASNPCLNGG ENSP00000254958/1-1218 INDCLGQCQN DASCRDLVNG YRCICPPGYA GDHCERDIDE CASNPCLNGG bmy_08568T0/1-1213 INDCLGQCQN DASCRDLVNG YRCICPPGYA GDHCETDIDE CASNPCLNGG BACU000647/1-1076 INDCLGQCQN DASCRDLVNG YRCICPPGYA GDHCETDIDE CASNPCLNGG ENSTTRP00000005880/1-1218 INDCLGQCQN DASCRDLVNG YRCICPPGYA GDHCETDIDE CASNPCLNGG 501 550 ENSBTAP00000009631/1-1218 HCQNEINRFQ CLCPTGFSGN LCQLDIDYCE PNPCQNGAQC YNRASDYFCK ENSP00000254958/1-1218 HCQNEINRFQ CLCPTGFSGN LCQLDIDYCE PNPCQNGAQC YNRASDYFCK bmy_08568T0/1-1213 HCQNEINRFQ CLCPTGFSGN LCQLDIDYCE PNPCQNGAQC YNRASDYFCK BACU000647/1-1076 HCQNEINRFQ CLCPTGFSGN LCQLDIDYCE PNPCQNGAQC YNRASDYFCK ENSTTRP00000005880/1-1218 HCQNEINRFQ CLCPTGFSGN LCQLDIDYCE PNPCQNGAQC YNRASDYFCK 551 600 ENSBTAP00000009631/1-1218 CPEDYEGKNC SHLKDHCRTT PCEVIDSCTV AMASNDTPEG VRYISSNVCG ENSP00000254958/1-1218 CPEDYEGKNC SHLKDHCRTT PCEVIDSCTV AMASNDTPEG VRYISSNVCG bmy_08568T0/1-1213 CPEDYEGKNC SHLKDHCRTT PCEVIDSCTV AMASNDTPEG VRYISSNVCG BACU000647/1-1076 CPEDYEGKNC SHLKDHCRTT PCEVIDSCTV AMASNDTPEG VRYISSNVCG ENSTTRP00000005880/1-1218 CPEDYEGKNC SHLKDHCRTT PCEVIDSCTV AMASNDTPEG VRYISSNVCG 601 650 ENSBTAP00000009631/1-1218 PHGKCKSQSG GKFTCDCNKG FTGTYCHENI NDCESNPCRN GGTCIDGVNS ENSP00000254958/1-1218 PHGKCKSQSG GKFTCDCNKG FTGTYCHENI NDCESNPCRN GGTCIDGVNS bmy_08568T0/1-1213 PHGKCKSQSG GKFTCDCNKG FTGTYCHENI NDCESNPCKN GGTCIDGVNS BACU000647/1-1076 PHGKCKSQSG GKFTCDCNKG FTGTYCHENI NDCESNPCKN GGTCIDGVNS ENSTTRP00000005880/1-1218 PHGKCKSQSG GKFTCDCNKG FTGTYCHENI NDCESNPCKN GGTCIDGVNS 651 700 ENSBTAP00000009631/1-1218 YACICSGGWE GAHCETNIND CSQNPCHNGG SCRDLVNDFY CDCKNGWKGK ENSP00000254958/1-1218 YKCICSDGWE GAYCETNIND CSQNPCHNGG TCRDLVNDFY CDCKNGWKGK bmy_08568T0/1-1213 YKCICSGGWE GAYCETNIND CSQNPCHNGG SCRDLVNDFY CDCKNGWKGK BACU000647/1-1076 YKCICSGGWE GAYCETNIND CSQNPCHNGG SCRDLVNDFY CDCKNGWKGK ENSTTRP00000005880/1-1218 YKCICSGGWE GAYCETNIND CSQNPCHNGG SCRDLVNDFY CDCKNGWKGK 701 750 ENSBTAP00000009631/1-1218 TCHSRDSQCD EATCNNGGTC YDEGDAFKCM CPGGWEGTTC NI-------- ENSP00000254958/1-1218 TCHSRDSQCD EATCNNGGTC YDEGDAFKCM CPGGWEGTTC NI-------- bmy_08568T0/1-1213 TCHSRDSQCD EATCNNGGTC YDEGDAFKCM CPGGWEGTTC NIDCCWILRE BACU000647/1-1076 TCHSRDSQCD EATCNNGGTC YDEGDAFKCM CPGGWEGTTC NIDCCWILRE ENSTTRP00000005880/1-1218 TCHSRDSQCD EATCNNGGTC YDEGDAFKCM CPGGWEGTTC NI-------- 751 800 ENSBTAP00000009631/1-1218 ---------A RNSSCLPSPC HNGGTCVVNG ESFTCVCKEG WEGPICTQ-- ENSP00000254958/1-1218 ---------A RNSSCLPNPC HNGGTCVVNG ESFTCVCKEG WEGPICAQ-- bmy_08568T0/1-1213 GGPVCSYLVA RNSSCLPNPC HNGGTCVVNG ESFTCVCKEG WEGPICTQRP BACU000647/1-1076 GGPVCSYLVA RNSSCLPNPC HNGGTCVVNG ESFTCVCKEG WEGPICTQ-- ENSTTRP00000005880/1-1218 ---------A RNSSCLPNPC HNGGTCVVNG ESFTCVCKEG WEGPICTQ-- 801 850 ENSBTAP00000009631/1-1218 ---------N TNDCSP---- -HPCYNSGTC VDGENWYRCE CAPGFAGPDC ENSP00000254958/1-1218 ---------N TNDCSP---- -HPCYNSGTC VDGDNWYRCE CAPGFAGPDC bmy_08568T0/1-1213 LPVYMCPTAN GTKCGVGLVP IEQSYNSGTC VDGENWYRCE CAPGFAGPDC BACU000647/1-1076 ---------N TNDCSP---- -HPCYNSGTC VDGENWYRCE CAPGFAGPDC ENSTTRP00000005880/1-1218 ---------N TNDCSP---- -HPCYNSGTC VDGENWYRCE CAPGFAGPDC 851 900 ENSBTAP00000009631/1-1218 RININECQSS PCAFGATCVD EINGYRCICP PGHSGAKCQE VSGRSCVTMG ENSP00000254958/1-1218 RININECQSS PCAFGATCVD EINGYRCVCP PGHSGAKCQE VSGRPCITMG bmy_08568T0/1-1213 RI-------- ---------- ---------- ---------- ISGRSCITVG BACU000647/1-1076 RININECQSS PCAFGATCVD EINGYRCVCP PGHSGAKCQE VSGRSCITVG ENSTTRP00000005880/1-1218 RININECQSS PCAFGATCVD EINGYRCVCP PGHSGAKCQE VSGRSCITVG 901 950 ENSBTAP00000009631/1-1218 SVIPDGAKWD ADCNACQCLD GRVACSKVWC GPRPCSLHRG HSECPSGQSC ENSP00000254958/1-1218 SVIPDGAKWD DDCNTCQCLN GRIACSKVWC GPRPCLLHKG HSECPSGQSC bmy_08568T0/1-1213 SVIPDGAKWD DDCNTCQCLD GRIACSKVWC GPRPCSLHKG HSECPSGQSC BACU000647/1-1076 SVIPDGAKWD DDCNTCQCLD GRIACSKVWC GPRPCSLHKG HSECPSGQSC ENSTTRP00000005880/1-1218 SVIPDGAKWD DDCNTCQCLD GRIACSKVWC GPRPCSLHKG HSECPSGQSC 951 1000 ENSBTAP00000009631/1-1218 VPILDTQCFV RPCTGVGECR SSSLQPVKTK CASDPYYQDN CANITFTFNK ENSP00000254958/1-1218 IPILDDQCFV HPCTGVGECR SSSLQPVKTK CTSDSYYQDN CANITFTFNK bmy_08568T0/1-1213 IPILDAQCFV RPCTGVGECR SSSLQPVKTK CASDPYYQDN CANITFTFNK BACU000647/1-1076 IPILDAQCFV RPCTGVGECR SSSLQPVKTK CASDPYYQDN CANITFTFNK ENSTTRP00000005880/1-1218 IPILDTQCFV RPCTGVGECR SSSLQPVKTK CASDPYYQDN CANITFTFNK 1001 1050 ENSBTAP00000009631/1-1218 EMMSPGLTTE HICSELRNLN ILKNVSAEYS IYIACEPSPS ANNEIHVAIS ENSP00000254958/1-1218 EMMSPGLTTE HICSELRNLN ILKNVSAEYS IYIACEPSPS ANNEIHVAIS bmy_08568T0/1-1213 EMMSPGLTTE HICSELRNLN ILKNVSAEYS IYIACEPSPS ANNEIHVAIS BACU000647/1-1076 EMMSPGLTTE HICSELRNLN ILKNVSAEYS IYIACEPSPS ANNEIHVAIS ENSTTRP00000005880/1-1218 EMMSPGLTTE HICSQLRNLN ILKNVSAEYS IYIACEPSPS ANNEIHVAIS 1051 1100 ENSBTAP00000009631/1-1218 AEDIRDDGNP IKEITDKIIN LVSKRDGNSS LIAAVAEVRV QRRPLKSRTD ENSP00000254958/1-1218 AEDIRDDGNP IKEITDKIID LVSKRDGNSS LIAAVAEVRV QRRPLKNRTD bmy_08568T0/1-1213 AEDIRDDGNP IKEITDKIID LVSKREGNSS LIAAVAEVRV QRRPLKNRTD BACU000647/1-1076 AEDIRDDGNP IKEITDKIID LVSKREGNSS LIAAVAEVRV QRRPLKNRTD ENSTTRP00000005880/1-1218 AEDIRDDGNP IKEITDKIID LVSKREGNSS LIAAVAEVRV QRRPLKNRTD 1101 1150 ENSBTAP00000009631/1-1218 FLVPLLSSVL TVAWVCCLVT AFYWCVRKRR KPGSHARAAS EDNTTNNVRE ENSP00000254958/1-1218 FLVPLLSSVL TVAWICCLVT AFYWCLRKRR KPGSHTHSAS EDNTTNNVRE bmy_08568T0/1-1213 FLVPLLSSVL TVAWVCCLVT AFYWCVRKRR KPGSHARSAS EESTTNNVRE BACU000647/1-1076 FLVPLLSSVL TVAWVCCLVT AFYWCVRKRR KPGSHARSAS EESTTNNVRE ENSTTRP00000005880/1-1218 FLVPLLSSVL TVAWVCCLVT AFYWCVRKRR KPGSHARSAS EESTTNNVRE 1151 1200 ENSBTAP00000009631/1-1218 QLNQIKNPIE KHGANTVPVK DYESKNSKMS KIRTHNSEVE EDDMDKHQQK ENSP00000254958/1-1218 QLNQIKNPIE KHGANTVPIK DYENKNSKMS KIRTHNSEVE EDDMDKHQQK bmy_08568T0/1-1213 QLNQIKNPIE KHGANTVPIK DYENKNSKMS KIRTHNSEVE EDDMDKHQQK BACU000647/1-1076 QLNQIKNPIE KHGANTVPIK DYENKNSKMS KIRTHNSEVE EDDMDKHQQK ENSTTRP00000005880/1-1218 QLNQIKNPIE KHGANTVPIK DYENKNSKMS KIRTHNSEVE EDDMDKHQQK 1201 1250 ENSBTAP00000009631/1-1218 ARFAKQATYT LVDREEKPAH GTPAKHPNWT NKQDNRDLES AQSLNRMEYI ENSP00000254958/1-1218 ARFAKQPAYT LVDREEKPPN GTPTKHPNWT NKQDNRDLES AQSLNRMEYI bmy_08568T0/1-1213 ARFARQATYT LVDREEKSPH GTPAKHPNWT NKQDNRDLES AQSLNRMEYI BACU000647/1-1076 ARFARQATYT LVDREEKSPH GTPAKHPNWT NKQDNRDLES AQSLNRMEYI ENSTTRP00000005880/1-1218 ARFARQATYT LVDREEKPPH GTPAKHPNWT NKQDNRDLES AQSLNRMEYI 1251 1300 ENSBTAP00000009631/1-1218 V ENSP00000254958/1-1218 V bmy_08568T0/1-1213 V BACU000647/1-1076 V ENSTTRP00000005880/1-1218 V