KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:01 2014 Check: 00 .. Name: ENSP00000359018/1-836 Len: 839 Check: 7732 Weight: 1.00 Name: ENSBTAP00000009644/1-830 Len: 839 Check: 5974 Weight: 1.00 Name: ENSTTRP00000002963/1-810 Len: 839 Check: 8647 Weight: 1.00 Name: bmy_15560T0/1-505 Len: 839 Check: 9110 Weight: 1.00 Name: BACU002751/1-664 Len: 839 Check: 8381 Weight: 1.00 // 1 50 ENSP00000359018/1-836 MDEADFSEHT TYK-QEDLPY DGDLSQIKIG NDYSFTSKKD GLEVLNQIIF ENSBTAP00000009644/1-830 MDKAYFLEDT TSKQQEDLPY DEGFSQVKLY HGYNLTSRYD ILDVSNQMNL ENSTTRP00000002963/1-810 MDEADFSEDA TSKKQEDLPY DGDFSQIQMY NDYNFTSKYD ILDVSNQTNL bmy_15560T0/1-505 MDEADFLEDA TSKKQEDLPY DGDFSQIQMY NNYNFTSKYD ILGVSNQMNL BACU002751/1-664 MDEADFLEDA TSKKQEDLPY DGDFSQIQMY NNYNFTSKYD ILDVSNQMNL 51 100 ENSP00000359018/1-836 IADDPQEKAM HSETCGNTAV TIPLGKITEN AANKKDEKEK QCTAALHIPA ENSBTAP00000009644/1-830 TEDESQEKAT YRETCQEADM TMTLDKMTEN AVSKTCDKEN QCTIYLPISA ENSTTRP00000002963/1-810 TEEDLQEKAT HRETCRKADM AMTLDKTTEN AVSKKYNKEN QCTINLHIPS bmy_15560T0/1-505 TEDDLQEKAT HRETCRKADM XMTLDKTTEN VISKKYDKEN QCTINLHIPS BACU002751/1-664 TEDDLQEKAT HRETCRKADM AMTLDKTTEN AISKKYDKEN QGTINLHIPS 101 150 ENSP00000359018/1-836 NEGDASKSSI SDILLHHLSK EPFLRGQGID CETLPEISNA DSFEEEAIIK ENSBTAP00000009644/1-830 NQEDASKSNI SDILLHHLCK EEFSKDQGIN CETLPEISNN DSF-DEAIIK ENSTTRP00000002963/1-810 NQGDPSKSNI PDILLHHVCK EEFLKGQGIN CETLPEISNA DSF-DGAIIK bmy_15560T0/1-505 NQGDPLKSNI SYILLHHLCK EEFSKGQGIN CETLPEISNA DSF-DGAVIK BACU002751/1-664 NQGDPLKSNI SYILLHHLCK EEFSKGQGIN CETLPEISNA DSF-DGAIIK 151 200 ENSP00000359018/1-836 SIISCYNKNS WPKEQTPELT DQLNPKRDGE NSNKPG-SAT TTEENTSDLE ENSBTAP00000009644/1-830 NIIVWHVKNS WPTEQSSELT DLLNSKSDDE NSNKPSCFLT MMEENTSDSD ENSTTRP00000002963/1-810 NIILQHVTNS WPTEQTSELT DQLNSKSDGE NSNKPR-FAI TTEENTSDLE bmy_15560T0/1-505 NIILQHVKNS WPTEQTSELT DQLNSKSDGE NSNKPSCFPT TTEENTSDLE BACU002751/1-664 NIILQHVKNS WPTEQTSELT DQLNSKSDGE NSNKPSCFPT TTEENTSDLE 201 250 ENSP00000359018/1-836 GPVAAGDSSH QENVNVLTKT KGPGDKQKSY QGQSPQKQQT EKANSGNTFK ENSBTAP00000009644/1-830 ESMASGESNH EENSNFLSKI KSLCDKQKSC LWQTPQK-QA EKESSGNKFK ENSTTRP00000002963/1-810 DPVAAGESNH QENSNFLTKI KSTGDKEKSC QWQTPQKQQA EKASSGNRFK bmy_15560T0/1-505 DPVAAGESSH QENSNFLTKI KSPGDKEKSC QGQTPQKQQA EKASSGNRFK BACU002751/1-664 DPAAAGESSH QENSNFLTKI KSPGDKEKSC QGQTPQKQQA EKASSGNRFK 251 300 ENSP00000359018/1-836 YGQGQVHYQL PDFSKIAPKV KIPKNKIINK PLAIAKQASF SSKSRDKPTL ENSBTAP00000009644/1-830 YGHSQVYYWF SNFSKVASKV KIPKNYTIDK PLITDPQASF SPKLRDKSAV ENSTTRP00000002963/1-810 YGQGQVHYWF SDSSKVA--- --PKNNITDK PLTTDKQASF SPKLRDKSAI bmy_15560T0/1-505 YGQGQVHYWF SDSSKFA--- --PKNNIIDK PLTTDKQASF SPKLRDKSAI BACU002751/1-664 YGQGQVHYWF SDSSKVA--- --PKNNIIDK PLTTDKQASF SPKLRDKSAI 301 350 ENSP00000359018/1-836 VQDSLETTPE SNCVEKQHQE QKGKITEPSQ QIQMEPIVHI HQELLTGIES ENSBTAP00000009644/1-830 GQDISESTSR SNYVEK--QE QKWETTQPSQ PVEMEPTVHI HQEHLTGIES ENSTTRP00000002963/1-810 VQDISESMSR SNGVEK--QE QKWKTPETSQ QIEMEPMVHI HQEHLAGIES bmy_15560T0/1-505 VQDISESMSR SNDVEK--QE QKWKTPEPSQ QIEVR----- -------IES BACU002751/1-664 VQDISESMSR SNDVEK--QE QKWKTPEPSQ QIE------- ---------- 351 400 ENSP00000359018/1-836 EASLSKLSPT SQKGTSSSSS YIFQKISQGK QMCQKLKEQT DQLKTKVQEF ENSBTAP00000009644/1-830 EPSLSNLPST SQEDPSLSSS YIFQKISQGK QMCQKLKEQT DQLKAKVQEF ENSTTRP00000002963/1-810 ETSLSKMPLT SQKDPSSSSS YTFHTISQGK QMCQKLKEQT DQLKTKVQEF bmy_15560T0/1-505 ETSLSKMPLT SQKDPSSSSS YTFHKISQGK QMCQKLKEQT DQLKTKVQEF BACU002751/1-664 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000359018/1-836 SKRIKQDSPY HLQDKKLVLE KLQGHLELLE QNFLATKDKH LTLQQQVHKH ENSBTAP00000009644/1-830 SKCIAQDSPY HFQRRRLVLE KLQGRLKLLE QEFLANKEKH LTLEEQVHEH ENSTTRP00000002963/1-810 SKSIAQDSPY HLQDRRLVLE KMQGHLELLE E-FLANKEKH LTLK-QVHKH bmy_15560T0/1-505 SKSIAQDSPY HLQDRRLVLE KVQGHLELLE QEFLANKEKH LTLKQQVHKH BACU002751/1-664 ---------- -------VLE ELQGHLELLE QEFLANKEKH LTLKQQVHKH 451 500 ENSP00000359018/1-836 ESTIVGDFDP ERKVEGEIFK LEMLLEDVKE KMDESKYTSA PSLPVSSPVT ENSBTAP00000009644/1-830 ESPAVKDFDP ERKVEGEIFK LEMLLKDFKE KIYKSKRTSA VSLPVNSPIN ENSTTRP00000002963/1-810 ESPAVDEFDP ERKVEGEIFT LEMLLEDFKE KINKGKYTSA VSLPVSSQIN bmy_15560T0/1-505 ESPGVDEFDP ERKVEGEIFT LEMLLEDFKE XINKGKHTSA VSLPVSSQIN BACU002751/1-664 ESPAVDEFDP ERKVEGEIVT LEMLLEDFEE KINKGKHASA VSLPVSSQIN 501 550 ENSP00000359018/1-836 LDDLASTFSS LSNEIPKEHP GHPSGPRGSG GSEVTGTPQG GPQEAPNEEL ENSBTAP00000009644/1-830 LDDLSFTSSP PLNEVIQQPT ELRTGCISNS LGEVRGSQRG --QEAPSSEE ENSTTRP00000002963/1-810 LDNLSSTSSP SSNELPKEHP GRPAWRRGCG EG--TGTPQA QTQEAPSSEE bmy_15560T0/1-505 PDDLSSTSSP SSNE------ ---------- ---------- ---------- BACU002751/1-664 PDDLSSTSSP SSNE------ ---------- ---------- ---------- 551 600 ENSP00000359018/1-836 CELAPQTYLN GHYGDAAAQN KPDQVAMRLS SNSGEDPNGT PRRQDCAEMT ENSBTAP00000009644/1-830 LAPQLYIKAL GYYSTETPPP PPPTLAQARK KSRGEEPSTA SGRQDRAETT ENSTTRP00000002963/1-810 L--------- ----DRLVPQ DPDQMTMRLS SASGEEPNNA AGRQDSTETT bmy_15560T0/1-505 ---------- ---------- ---------- ---------- ---------- BACU002751/1-664 ---------- ---------- ---------- ----EEPNNA SGRQDGAETT 601 650 ENSP00000359018/1-836 APSPSCAFCR RLLEWKQNVE KKGHGRINCG RFSIVLHEKA PHSDSTPNSD ENSBTAP00000009644/1-830 --SASCAFCL RVLQWKQKME KKDHRGIDCG RFPIAIQDKM LHPDSVLGSD ENSTTRP00000002963/1-810 --GASCAFCH QVLEWKQKME KKGHRGINRG RFPVAIQDKA RHPDSVLGSD bmy_15560T0/1-505 ---------- ---------- ---------- ---------- ---------- BACU002751/1-664 --GARCAFGH RVLEWKQKME KKGHRGINHG RFPVAIQDKA RHPDSLLGSD 651 700 ENSP00000359018/1-836 TGHSFCSDSG TEMQSNKCQD CGTKIPTSRR ACRKEPTKEF HYRYNTPGQN ENSBTAP00000009644/1-830 TGYSCCSASR IGLQSSKCEN CGTKILNSQR VCRKEPPKEF HYRYNTPGQN ENSTTRP00000002963/1-810 TGLSCYSASG TGLQSNKCEN CSTKIYNSQR VCGKALSKEF HYIFNTPGQN bmy_15560T0/1-505 ---------- ---------- ---------- ---------- ---------- BACU002751/1-664 TGLSCYSASG TGLQSNKCEN CSTKIHNSQR VCGKASSKEF HYIFNTPGQN 701 750 ENSP00000359018/1-836 YSNHSKRGAF VQPHSLDESK NSSPSFLKPK RICSQRVNSK SFK-GEHEPT ENSBTAP00000009644/1-830 FFNHTERSAF AQLRYLNEN- NSSPTHSKPK WICFQRANPK SSNVNPYQES ENSTTRP00000002963/1-810 FFNHSKXXXX XXXXXXXXXX XXXXXHSKPK WICFQSANSK SSH-DECELI bmy_15560T0/1-505 -------DVT MQLKLMN--- ---------- ---------- ---------- BACU002751/1-664 FFNHSKRSAF AQLRYLNENK NSSPSHSKPK WICFQSANSK SSY-DECELI 751 800 ENSP00000359018/1-836 PGKKKLQAFM TYSSDPATPS PHFYSCRISG SKSLCDFDST EEIKSEILNS ENSBTAP00000009644/1-830 KGKGGIEYYY LIWSDLATLS PHSHSCRISE NTSSSNFSSN KETESEILNS ENSTTRP00000002963/1-810 PGXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXILNS bmy_15560T0/1-505 ---------- ---------- -----C---- ---------- ---------- BACU002751/1-664 PGN------- ---SDLATPS PHSHSCRISE STSSSNFTGI EETESEILNS 801 850 ENSP00000359018/1-836 ALDHALRTAT ILKETTDQMI KTIAEDLAKA QRWRNRLKY ENSBTAP00000009644/1-830 SLDHALRTAT ILKQTTDQMI RTIAEDLAKV QRWRKKLKY ENSTTRP00000002963/1-810 SLDHALRTAT ILKQTTDQMI RTMAEDLAKV ERWRNRLKY bmy_15560T0/1-505 ---------- ---------- ---------- --------- BACU002751/1-664 SLDHALRTAT ILKQTTDQMI RTIAEDLAKV QRWRNRLKY