KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:03 2014 Check: 00 .. Name: ENSP00000254190/1-802 Len: 803 Check: 9464 Weight: 1.00 Name: ENSBTAP00000009678/1-803 Len: 803 Check: 6076 Weight: 1.00 Name: ENSTTRP00000002421/1-640 Len: 803 Check: 6767 Weight: 1.00 Name: bmy_17109T0/1-406 Len: 803 Check: 8939 Weight: 1.00 Name: BACU007876/1-340 Len: 803 Check: 7414 Weight: 1.00 // 1 50 ENSP00000254190/1-802 MAARGRRAWL SVLLGLVLGF VLASRLVLPR ASELKRAGPR RRASPEGCRS ENSBTAP00000009678/1-803 MAVRGRRAWL SVLLGLVLGF VLASRLVLPR ASELKRAGPR RRASPEACRP ENSTTRP00000002421/1-640 ---------- ---------- --------PR ASELKRAGPR LRASPEGCRP bmy_17109T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU007876/1-340 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000254190/1-802 GQAAA-SQAG GARGDARGAQ LWPPGSDPDG GPRDRNFLFV GVMTAQKYLQ ENSBTAP00000009678/1-803 GQAAAVPLAG GARGDARGQR LWPHGEAQDG VPRDRNFLFV GVMTAQKYLQ ENSTTRP00000002421/1-640 GQAAAASHAG GARGDARGEQ LWPHGRAQDG GPHDSNFLFV GVMTAQKYLQ bmy_17109T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU007876/1-340 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000254190/1-802 TRAVAAYRTW SKTIPGKVQF FSSEGSDTSV PIPVVPLRGV DDSYPPQKKS ENSBTAP00000009678/1-803 TRAVAAFRTW SKTIPGKVEF FSSEGSDTSI SIPVVPLRGV DDSYPPQKKS ENSTTRP00000002421/1-640 TRAVAAYRTW SKTIPGKVEF FSSEGSDTSI PIPIVPLRGV DDSYPPQKKS bmy_17109T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU007876/1-340 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000254190/1-802 FMMLKYMHDH YLDKYEWFMR ADDDVYIKGD RLENFLRSLN SSEPLFLGQT ENSBTAP00000009678/1-803 FMMLKYMHDH YLDKYEWFMR ADDDVYIKGD RLESFLRSLN SSEPLFLGQT ENSTTRP00000002421/1-640 FMMLKYMHDH YLDKYEWFMR ADDDVYIKGD RLENFLRSLN SSEPLFLGQT bmy_17109T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU007876/1-340 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000254190/1-802 GLGTTEEMGK LALEPGENFC MGGPGVIMSR EVLRRMVPHI GKCLREMYTT ENSBTAP00000009678/1-803 GLGTTEEMGK LALEPGENFC MGGPGVIMSR EVLRRMVPHI GKCLREMYTT ENSTTRP00000002421/1-640 GLGTTEEMGK LALEPGENFC MGGPGVIMSR EVLRRMVPHI GKCLREMYTT bmy_17109T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU007876/1-340 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000254190/1-802 HEDVEVGRCV RRFAGVQCVW SYEMQQLFYE NYEQNKKGYI RDLHNSKIHQ ENSBTAP00000009678/1-803 HEDVEVGRCV RRFAGVQCVW SYEMQQLFYE NYEQNKKGYI RDLHNSKIHR ENSTTRP00000002421/1-640 HEDVEVGRCV RRFAGVQCVW SYEMQQLFYE NYEQNKKGYI RDLHNSKIHR bmy_17109T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU007876/1-340 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000254190/1-802 AITLHPNKNP PYQYRLHSYM LSRKISELRH RTIQLHREIV LMSKYSNTEI ENSBTAP00000009678/1-803 AITLHPNKNP PYQYRLHSYM LSRKIAELRH RTIQLHREIV LMSKYSNTEV ENSTTRP00000002421/1-640 AITLHPNKNP PYQYRLHSYM LSRKIAELRH RTIHLHREIV LMSKYSNTEI bmy_17109T0/1-406 ---------- ---------- ---------- ---------- ---------- BACU007876/1-340 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000254190/1-802 HKEDLQLGIP PSFMRFQPRQ REEILEWEFL TGKYLYSAVD GQPPRRGMDS ENSBTAP00000009678/1-803 HKEDLQLGIP PSFMRFQPRQ REEILEWEFL TGKYLYSAAD SQPPRRGMDS ENSTTRP00000002421/1-640 HKEDLQLGIP PSFMRFQPRQ REEILEWEFL TGKYLYSAAD SQPPRRGMDS bmy_17109T0/1-406 ---------- ---------- ---------- ---------- -------MDS BACU007876/1-340 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000254190/1-802 AQREALDDIV MQVMEMINAN AKTRGRIIDF KEIQYGYRRV NPMYGAEYIL ENSBTAP00000009678/1-803 AQREALDDIV MQVMEMINAN AKTRGRIIDF KEIQYGYRRV NPMYGAEYIL ENSTTRP00000002421/1-640 AQREALDDIV MQVMEMINAN AKTRGRVIDF KEIQYGYRRV NPMYGAEYIL bmy_17109T0/1-406 AQREALDDIV MQVMEMINAN AKTRGRIIDF KEVQYGYRRV NPMYGAEYIL BACU007876/1-340 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000254190/1-802 DLLLLYKKHK GKKMTVPVRR HAYLQQTFSK IQFVEHEELD AQELAKRINQ ENSBTAP00000009678/1-803 DLLLLYKKHK GKKMTVPVRR HAYLQQTFSK IQFVEHEELD AKELANKINQ ENSTTRP00000002421/1-640 DLLLLYKKHK GKKMTVPVRR HAYLQQTFSK IQFVEHEELD AKELANKINQ bmy_17109T0/1-406 DLLLLYKKHK GKKMTVPVRR HAYLQQTFSK IQFVEHEELD AKELAKKINQ BACU007876/1-340 ---------- ---MTVPVRR HAYLQQTFSK IQFVEHEELD AKELAKKINQ 501 550 ENSP00000254190/1-802 ESGSLSFLSN SLKKLVPFQL PGSKSEHKEP KDKKINILIP LSGRFDMFVR ENSBTAP00000009678/1-803 ESGSLSFLSN SLKKLVPFQL PGSKNEHKEP KEKKINILIP LSGRFDMFVR ENSTTRP00000002421/1-640 ESGSLSFLSN SLKKLVPFQL PGSKDEHKEP KEKKINILIP LSGRFDMFVR bmy_17109T0/1-406 ESGSLSFLSN SLKKLVPFQL PGSKDEHKEP KEKKINILIP LSGRFDMFVR BACU007876/1-340 ESGSLSFLSN SLKKLVPFQL PGSKDEHKEP KEKKINILIP LSGRFDMFVR 551 600 ENSP00000254190/1-802 FMGNFEKTCL IPNQNVKLVV LLFNSDSNPD KAKQVELMRD YRIKYPKADM ENSBTAP00000009678/1-803 FMGNFEKTCL IPNQNVKLVV LLFNSDSNPD KAKQVELMRD YRIKYPKADM ENSTTRP00000002421/1-640 FMGNFEKTCL IPNQNVRLVV LLFNSDSNPD KAKQVELMRD YRIKYPKADM bmy_17109T0/1-406 FMGNFEKTCL IPNQNVRLVV LLFNSDSNPD KAKQVELMRD YRIKYPKADM BACU007876/1-340 FMGNFEKTCL IPNQNVRLVV LLFNSDSNPD KAKQVELMRD YRIKYPKADM 601 650 ENSP00000254190/1-802 QILPVSGEFS RALALEVGSS QFNNESLLFF CDVDLVFTTE FLQRCRANTV ENSBTAP00000009678/1-803 QILPVSGEFS RALALEVGSS QFNNESLLFF CDVDLVFTAE FLQRCRANTV ENSTTRP00000002421/1-640 QILPVSGEFS RALALEVGSS QFNNESLLFF CDVDLVFTTE FLQRCRANTV bmy_17109T0/1-406 QILPVSGEFS RALALEVGSS QFNNESLLFF CDVDLVFTTE FLQRCRANTV BACU007876/1-340 QILPVSGEFS RALALEVGSS QFNNESLLFF CDVDLVFTTE FLQRCRANTI 651 700 ENSP00000254190/1-802 LGQQIYFPII FSQYDPKIVY SGKVPSDNHF AFTQKTGFWR NYGFGITCIY ENSBTAP00000009678/1-803 LGQQIYFPII FSQYDPKIVY SGKVPSDNHF AFTQKTGFWR NYGFGITCIY ENSTTRP00000002421/1-640 LGQQIYFPII FSQYDPKI-- ---------- ---------- ---------- bmy_17109T0/1-406 LGQQIYFPII FSQYDPKIVY SGKVPSDNHF AFTQKTGFWR NYGFGITCIY BACU007876/1-340 LGQQIYFPII FSQYDPKIVY SGKVPSDNHF AFTQKTGFWR NYGFGITCIY 701 750 ENSP00000254190/1-802 KGDLVRVGGF DVSIQGWGLE DVDLFNKVVQ AGLKTFRSQE VGVVHVHHPV ENSBTAP00000009678/1-803 KGDLVRVGGF DVSIQGWGLE DVDLFNKVVQ AGLKTFRSQE VGVVHVHHPV ENSTTRP00000002421/1-640 ---------- ---------- ---------- ---------- ---------- bmy_17109T0/1-406 KGDLVQVGGF DVSIQGWGLE DVDLFNKVVQ AGLKTFRSQE VGVVHVHHPV BACU007876/1-340 KGDLVQVGGF DVSIQGWGLE DVDLFNKVVQ AGLKTFRSQE VGVVHVHHPV 751 800 ENSP00000254190/1-802 FCDPNLDPKQ YKMCLGSKAS TYGSTQQLAE MWLEKNDPSY SKSSNNNGSV ENSBTAP00000009678/1-803 FCDPNLDPKQ YKMCLGSKAS TYGSTHQLAE MWLEKNDPNY SKSSNNNGSV ENSTTRP00000002421/1-640 ---------- ---------- ---------- ---------- ---------- bmy_17109T0/1-406 FCDPNLDPKQ YKMCLGSKAS TYGSTQQLAE MWLEKNDPNY SKSSNNNGSV BACU007876/1-340 FCDPNLDPKQ YKMCLGSKAS TYGSTQQLAE MWLEKNDPNY SKSSNNNGSV 801 850 ENSP00000254190/1-802 RTA ENSBTAP00000009678/1-803 RTA ENSTTRP00000002421/1-640 --- bmy_17109T0/1-406 RTA BACU007876/1-340 RTA