KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:04 2014 Check: 00 .. Name: ENSP00000285021/1-940 Len: 976 Check: 2100 Weight: 1.00 Name: ENSBTAP00000009683/1-932 Len: 976 Check: 8965 Weight: 1.00 Name: ENSTTRP00000010617/1-907 Len: 976 Check: 4832 Weight: 1.00 Name: bmy_19601T0/1-914 Len: 976 Check: 6379 Weight: 1.00 Name: BACU009998/1-933 Len: 976 Check: 1951 Weight: 1.00 // 1 50 ENSP00000285021/1-940 MARKRAAGGE PRGRELRSQK SKAKSKARRE EEEEDAFEDE KPPKKSLLSK ENSBTAP00000009683/1-932 MARKRAAGRG PRGQ-----T AKGETKARRK EEEADVFEDE KPLKKSPPTK ENSTTRP00000010617/1-907 ---------- ---------- ---------- -----VFEDE KPPKKSVRSK bmy_19601T0/1-914 ----MAAGRE PRGH------ ---------- -----VFEDE KPLKKSLLSK BACU009998/1-933 -------MRL PRAS---PTS LRLCLPCRER CALSDVFEDE KPLKKSLLSK 51 100 ENSP00000285021/1-940 VSQGKRKRGC SHPGGSADGP AKKKVAKVTV KSENLKVIKD EALSDGDDLR ENSBTAP00000009683/1-932 VSRGKRKRGC GDAGGSADGP VRRKAAKVSV KSEEPQVIKD EALSDGEDFR ENSTTRP00000010617/1-907 VSRGKRKRGF GDSGGPADGP ARKKAAKVTV KSENPPVIKD EALSDGEDSR bmy_19601T0/1-914 VSRGKRKRGY GDSGGPADGP ARKKAAKVTV KSENPQVIKD EALSDGEDFR BACU009998/1-933 VSRGKRKRGY GDSGGPADGP ARKKAAKVTV KSENPQVIKD EALSDGEDFR 101 150 ENSP00000285021/1-940 DFPSDLKKAH HLKRGATMNE DSNE--EEEE SENDWEEVEE LSEPVLGDVR ENSBTAP00000009683/1-932 DLPSARRKGQ PPEREAAADK GSCEGDDEED SEEDWEEVEE VSEPVPGDVG ENSTTRP00000010617/1-907 DFPSALKKVH RPEKEAAADK GGGEGGDEEE SEEDWEEVEE VSEPVPGDVG bmy_19601T0/1-914 DFPSAPKKVH RPEKEAAVDK GGGEGDDEEE SEEDWEEVEE VSEPMPGDVG BACU009998/1-933 EFPSARKKVH RPEKEAAVDK GGGEGDDEEE SEEDWEEVEE VSEPMPGDVG 151 200 ENSP00000285021/1-940 ESTAFSRSLL PVKPVEIEIE TPEQAKTRER SEKIKLEFET YLRRAMKRFN ENSBTAP00000009683/1-932 ESGAFSASAL PVKPVEIEIE TPEQVKARER SEKIKMEFET YLRRMMKRFS ENSTTRP00000010617/1-907 ESAAFSTSAL PVKPVEIEIE TPEQVKARER SEKIKTEFET YLRRMMKRFN bmy_19601T0/1-914 ESSALSTSAL PVKPVEIEIE TPEQLKARER SEKIKTELET YLRRMVKRFN BACU009998/1-933 ESSALSTSAL PVKPVEIEIE TPEQLKARER SEKIKTELET HLRRMVKRFN 201 250 ENSP00000285021/1-940 KGVHEDTHKV HLLCLLANGF YRNNICSQPD LHAIGLSIIP ARFTRVLPRD ENSBTAP00000009683/1-932 KEVHEDTHKV HLLCLLANGF YRNSICNQPD LQAIGLSIIP TRFTKVPPRD ENSTTRP00000010617/1-907 KEVREDTHKV HLLCLLANGF YRNSICNQPD LRAIGLSIVP TRFTKVPPQD bmy_19601T0/1-914 KEVREDTHKV HLLCLLANGF YRNSICNQPD LRAIGLSIVP TRFTKVPPQD BACU009998/1-933 KEVREDTHKV HLLCLLANGF YRNSICSQPD LRAIGLSIVP TRFTKVPPQD 251 300 ENSP00000285021/1-940 VDTYYLSNLV KWFIGTFTVN AELSASEQDN LQTTLERRFA IYSARDDEEL ENSBTAP00000009683/1-932 VDVSYLSNLV KWFIGTFTVN AELSTNEQDG LQTTLERRFA IYSARDDEEL ENSTTRP00000010617/1-907 VDVSYLSNLA KWFIGTFTVN ADLSTNEQDG LQTTLERRFA IYSARDSEEL bmy_19601T0/1-914 VDVSYLSNLV KWFIGTFTVN ADLSTNEQDG LQTTLERRFA IYSARDNEEL BACU009998/1-933 VDVSYLSNLA KWFIGTFTVN ADLSTNEQDG LQTTLERRFA IYSARDNEEL 301 350 ENSP00000285021/1-940 VHIFLLILRA LQLLTRLVLS LQPIPLKSAT AKGKKPSKER LTADPGGSSE ENSBTAP00000009683/1-932 VHIFLLLLRA LHLPTRLVLS LQPVPLKLSA EKGKKPCKER STEAPGGSSE ENSTTRP00000010617/1-907 VHIFLLILRA LHLPTRLVLS LQPIPLKLSA AKGKKPSKER STEGPGGSSE bmy_19601T0/1-914 VHIFLLILRA LHLPTRLVLS LQPIPLKLSA AKGKKPSKER STEGPGGSSE BACU009998/1-933 VHIFLLILRA LHLPTRLVLS LQPIPLKLSA AKGKKPSKER STEGPGGSSE 351 400 ENSP00000285021/1-940 TSSQVLENHT KPKTSKGTKQ EETFAKGT-- CRPSAKGKRN KGGRKKRSKP ENSBTAP00000009683/1-932 AASHAPGKP- ----SGGSGG EHASSGGAGG ARARGKGGKA AAGRRPRGES ENSTTRP00000010617/1-907 TSSQVPGKPS KPETSRGSRR EDMSSEGTGS APDKAKGSKA AATRKKRREP bmy_19601T0/1-914 TSSQVPGKPS KPETSRGSRR EDTSSEGAGS ARAKGKGSKA AAIRKKRREP BACU009998/1-933 TSSQVPGKPS KPETSRGSRR EDTSSEGTGS ARAKGKGSKA AAIRKKRREP 401 450 ENSP00000285021/1-940 SSSEEDEGPG DKQEKATQRR PHGRERRVAS RVSYKEESGS DEAGSGSDFE ENSBTAP00000009683/1-932 PSSGEDAGQA RGQRRGTQRR AQARRRRVAA KVSYKEESGS DAASSGSDFE ENSTTRP00000010617/1-907 SSSRKEEGKA GGQTEGTQRR SRGRERQAAA RVSYKEESGS DKASSSSDFE bmy_19601T0/1-914 SSSREEEGKA GGQTEGTQRR SRGRERWAAA RVSYKEESGS DEAGSGSDFE BACU009998/1-933 SSSREEEGKA GGQTEGAQRR SRGRERRAAP RVSYKEESGS DEAGSGSDFE 451 500 ENSP00000285021/1-940 LSSGEASDPS DEDSEPGPPK QRKAPAPQRT KAGSKSASRT HRGSHRKDPS ENSBTAP00000009683/1-932 PSSEDSCRPS DEDSEPGLPR PRRAPAPQRT KAGSKSRSKS QQGSRGLRPG ENSTTRP00000010617/1-907 LSR--TAIPS DEDSEPGLPR QRRAAAPQRM KVGSKRESRS QRGSDGQPPG bmy_19601T0/1-914 LSSSDSHRPS DEDSEPGLSR QRRATAPQRM KVGSKRESRS QRGSHPQPPG BACU009998/1-933 LSSSDSHHPS DEDSEPGLSR QRRATAPQRM KVGSKRESRS QRGSRPQPPG 501 550 ENSP00000285021/1-940 LPAASSSSSS SKR--GKK-M CSDGEKAEKR SIAGIDQWLE VFCEQEEKWV ENSBTAP00000009683/1-932 FVEASASAAG SKRKGGKK-P SGDGGKAGRQ GAAGVDQWLE VFLEREEKWV ENSTTRP00000010617/1-907 FPEASVSASS SKRKRGKRKM PVDGEEADGR RAAGVDQWLE VFSEQEEKWV bmy_19601T0/1-914 FPEASVSASG SKRKRGKRTM PVDGEEADGR RAAGVDQWLE VFSEREEKWL BACU009998/1-933 FPEASVSASG SKRQRGKRKM PVDGEEADGR RAAGVDQWLE VFSEREEKWL 551 600 ENSP00000285021/1-940 CVDCVHGVVG QPLTCYKYAT KPMTYVVGID SDGWVRDVTQ RYDPVWMTVT ENSBTAP00000009683/1-932 CVDCVHGVVG QPLTCYQYAT KPVTYVVGID GAGCVRDVTQ RYDPAWLTAT ENSTTRP00000010617/1-907 CVDCVHGVVG QPLTCYQYAT KPVTYIVGID SDGCLRDVTQ RYDPAWMTVT bmy_19601T0/1-914 CVDCVHGVVG QPLTCYQHAT KPVTYIVGID GDGWVRDVTQ RYDPAWMTAT BACU009998/1-933 CVDCVHGVVG QPLTCYQHAT KPVTYIVGID GDGWVRDVTQ RYDPAWMTAT 601 650 ENSP00000285021/1-940 RKCRVDAEWW AETLRPYQSP FMDREKKEDL E--------- ---------- ENSBTAP00000009683/1-932 RKSRVDAAWW AETLRPYRSP LVDREQREDQ E--------- ---------- ENSTTRP00000010617/1-907 RKCRVDAAWW AETLRPYQSP LVEREQKEDQ E--------- ---------- bmy_19601T0/1-914 RKCRVDAAWW AEALRPYRSP LVAREQREDQ ELPGQVRGSP PTSLPPSPST BACU009998/1-933 RKCRVDAAWW AEALRPYRSP LVAREQREDQ E--------- ---------- 651 700 ENSP00000285021/1-940 ---------- FQAKHMDQPL PTAIGLYKNH PLYALKRHLL KYEAIYPETA ENSBTAP00000009683/1-932 ---------- FQAKHLDQPL PTVIGTYKNH PLYALKRHLL KYEAIYPETA ENSTTRP00000010617/1-907 ---------- FQARHLDQPL PTVIGMYKNH PLYALKRHLL KYEAIYPETA bmy_19601T0/1-914 TPNVVSRPLQ FQARHLDQPL PTVIGTYKNH PLYALKRHLL KYEAIYPETA BACU009998/1-933 ---------- FQARHLDQPL PTVIGTYKNH PLYALKRHLL KYEAIYPETA 701 750 ENSP00000285021/1-940 AILGYCRGEA VYSRDCVHTL HSRDTWLKKA RVVRLGEVPY KMVKGFSNRA ENSBTAP00000009683/1-932 AVLGYCRGEA VYSRDCVHTL HSRDTWLKQA RVVRLGEVPY KMVKGYSNRA ENSTTRP00000010617/1-907 AILGYCRGEA VYSRDCVHTL HSKDTWLKQA RVVRLGEVPY KVVKGYSNRA bmy_19601T0/1-914 AILGYCRGEA VYSRDCVHTL HSRDTWLKQA RVVRLGEVPY KVTAA----- BACU009998/1-933 AILGYCRGEA VYSRDCVHTL HSRDTWLKQA RVVRLGEVPY KVVKGYSNRA 751 800 ENSP00000285021/1-940 RKARLAEPQL REENDLGLFG YWQTEEYQPP VAVDGKVPRN EFGNVYLFLP ENSBTAP00000009683/1-932 RRARQAEPQL HDYNDLGLFG RWQTEEYQPP VAVDGKVPRN EFGNVYLFLP ENSTTRP00000010617/1-907 RRARLAEPQL QDYNDLGLFG KWQTEEYQPP VAVDGKVPRN EFGNVYLFLP bmy_19601T0/1-914 ---------- ------GL-- ---------- -RAAAHVPRN EFGNVYLFLP BACU009998/1-933 RRARLAEPQL QDYNDLGLFG KWQTEQYQPP VAVDGKVPRN EFGNVYLFLP 801 850 ENSP00000285021/1-940 SMMPIGCVQL NLPNLHRVAR KLDIDCVQAI TGFDFHGGYS HPVTDGYIVC ENSBTAP00000009683/1-932 SMMPVGCVQL NLPNLHRVAR KLNIDCAQAV TGFDFHKGYC HPITDGYVVC ENSTTRP00000010617/1-907 GMMPVGCVQL NLPNLHRVAR KLNIDCAQAV TGFDFHKGYS HPITDGYIIC bmy_19601T0/1-914 GMMPVGCVQL NLPNLHRVAR KLNIDCAQAV TGFDFHKGYS HPITNGYIVC BACU009998/1-933 GMMPVGCVQL NLPNLHRVAR KLNIDCAQAV TGFDFHKGYS HPVTDGYIVC 851 900 ENSP00000285021/1-940 EEFKDVLLTA WENEQAVIER KEKEKKEKRA LGNWKLLAKG LLIRERLKRR ENSBTAP00000009683/1-932 EEYRDVLLTA WENEQALIEK KEKEKREKRA LGNWKLLVKG LLIRERLKLR ENSTTRP00000010617/1-907 EEYKDVLLAA WENEQALIEK KEKEKREKRA LGNWKLLVKG LLIRERLRLR bmy_19601T0/1-914 EEYKDVLLTA WENEQALIEK KEKEKREKRA LGNWKLLVKG LLIRERLRLR BACU009998/1-933 EEYKDVLLTA WENEQALIEK KEKEKREKRA LGNWKLLVKG LLIRERLRLR 901 950 ENSP00000285021/1-940 YGPKSEAAAP HTDAGGGLSS DEEEGTSSQA EAARILAASW PQNREDEEKQ ENSBTAP00000009683/1-932 YGAQSEAAAP HTDVGGGLSS DEEEGTSSQA EAARILAASW PQNREA-EKP ENSTTRP00000010617/1-907 YGAQSEEAAP HADAGGGLSS DEEEGTSSPA EVARILAASW PQNREVEEKR bmy_19601T0/1-914 YGAQSEEAAP HADAGGGLSS DEEEGTSSPA EAARILAASW PQNREVEEKR BACU009998/1-933 YGDQNEEAAP HADAGGGLSS DEEEGTSSPA EAARILAASW PQNREVEEKR 951 1000 ENSP00000285021/1-940 KLKGGPKKTK REKKAAASHL FPFEQL ENSBTAP00000009683/1-932 K---CPRKTR REKKEAAAHL FPFEKL ENSTTRP00000010617/1-907 K---CPRKSR REEKEAASHL FPFEKL bmy_19601T0/1-914 K---CPRKSR REEKEAASHL FPFEKL BACU009998/1-933 K---CPRKSR RE-KEAASHL FPFEKL