KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:06 2014 Check: 00 .. Name: ENSTTRP00000004995/1-624 Len: 644 Check: 2834 Weight: 1.00 Name: ENSP00000199389/1-630 Len: 644 Check: 6406 Weight: 1.00 Name: ENSBTAP00000009691/1-632 Len: 644 Check: 1178 Weight: 1.00 Name: bmy_20985T0/1-419 Len: 644 Check: 4192 Weight: 1.00 Name: BACU012124/1-635 Len: 644 Check: 649 Weight: 1.00 // 1 50 ENSTTRP00000004995/1-624 MLG--LGARE REAEGDAAGA VPAPPAIDFP AEGSDPKYDX XXXXXXXXXX ENSP00000199389/1-630 MQGGNSGVRK REEEGDGAGA VAAPPAIDFP AEGPDPEYDE SDVPAEIQVL ENSBTAP00000009691/1-632 MLGGVSGSAK HEAEGDAAGA VPAPPAIDFP AESSDPKYDE SDVPAELQVL bmy_20985T0/1-419 MLGGILGARE REAEGDAAGA VPAPPAIDFP AEGSDPKYDE SDVPAELQVL BACU012124/1-635 MLGGILGARE REAEGDAAGA VPAPPAIDFP AEGSDPKYDE SDVPAELQVL 51 100 ENSTTRP00000004995/1-624 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000199389/1-630 KEPLQQPTFP FAVANQLLLV SLLEHLSHVH EPNPLRSRQV FKLLCQTFIK ENSBTAP00000009691/1-632 KGPLQQPTFP FAVANQLLLV SLLEHLSHVH EPNPLRSRQV FKLLCQTFIK bmy_20985T0/1-419 KGPLQQPTFP FAVANQLLLV SLLEHLSHVH EPNPLRSRQV FKLLCQTFIK BACU012124/1-635 KGPLQQLTFP FAVANQLLLV SLLEHLSHVH EPNPLRSRQV FKLLCQTFIK 101 150 ENSTTRP00000004995/1-624 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXGPC EDNSHIQKIX ENSP00000199389/1-630 MGLLSSFTCS DEFSSLRLHH NRAITHLMRS AKERVRQDPC EDISRIQKIR ENSBTAP00000009691/1-632 MGLLSSFTCS DEFSSLRLHH NRAITHLMRS AKERVRQGPC EDNSHIQKIR bmy_20985T0/1-419 MGLLSSFTCS DEFSSLRLHH NRAITHLMRS AKERVRQGPC EDNSHIQKIR BACU012124/1-635 MGLLSSFTCS DEFSSLRLHH NRAITHLMRS AKERVRQGPC EDNSHIQKIR 151 200 ENSTTRP00000004995/1-624 XGEVALEAQT LHYLRQSEEL AILGK-GCKR VYKVRNKLDG QYYAI-KILI ENSP00000199389/1-630 SREVALEAQT SRYLNEFEEL AILGKGGYGR VYKVRNKLDG QYYAIKKILI ENSBTAP00000009691/1-632 AREVAFEAQT SRYLNEFEEL AVLGKGGYGR VYKVRNKLDG QYYAIKKILI bmy_20985T0/1-419 SREVGFEAQT SRYLNEFEEL AILGKGGYGR VYKVRNKLDG QYYAIKKILI BACU012124/1-635 SREVGFEAQT SRYLNEFEEL AILGKGGYGR VYKVRNKLDG QYYAIKKILI 201 250 ENSTTRP00000004995/1-624 KGATKTDCMK VLREVKVLAG LQHPNIVGYH TAWIEHVHMA QRQADRISIQ ENSP00000199389/1-630 KGATKTVCMK VLREVKVLAG LQHPNIVGYH TAWIEHVHVI QPRADRAAIE ENSBTAP00000009691/1-632 KGATKADCMK VLREVKVLAG LQHPNIVGYH TAWIEHVHVA HRQADRLSLQ bmy_20985T0/1-419 KGATKTDCMK ---------- ---------- ------ISFC FCSADRISIQ BACU012124/1-635 KGATKTDCMK VLREVKVLAG LQHPNIVGYH TAWIEHVHMA QRQADRISIQ 251 300 ENSTTRP00000004995/1-624 LPSLEVISDQ EDPRDQCDVK SDESNSPSII FAEFTPEEEK SLGESGVE-N ENSP00000199389/1-630 LPSLEVLSDQ EEDREQCGVK NDESSSSSII FAEPTPEKEK RFGESDTE-N ENSBTAP00000009691/1-632 LPSLEVISDQ KDPSAQCDVK SDGSNSSSII FAEFTSEEEK SLREPGVEDN bmy_20985T0/1-419 LPSLEVISDQ EDPRDQCDVK SDESNSSFII FAEFTPEEEK SLGESGVE-N BACU012124/1-635 LPSLEVISDQ GDPRDQCDVK SDESNSSFII FAEFTPEEEK SLGESGVE-N 301 350 ENSTTRP00000004995/1-624 QNNRLVNYSA GVVTRDAGEF EPSLEPQGKG VADESSRSIV GHRLPLGHNS ENSP00000199389/1-630 QNNKSVKYTT NLVIRESGEL ESTLELQENG LAGLSASSIV EQQLPLRRNS ENSBTAP00000009691/1-632 QNNRLVNYSS RIVARDAGDF ESSLELHESE VADGSPRPIA GRRLPFRHNS bmy_20985T0/1-419 QNNRLVNCSA SVVTRDAGGF APSLEPQEKG VADGSSRSTV GPRLPVRHNS BACU012124/1-635 QNNRLVNCSA SVVTREAGGF APSLEPQEEG VADGSSRSTV GRRLPVRHNS 351 400 ENSTTRP00000004995/1-624 DLEENFASTE ESSEENLNLL GQTEVQYHLM LHIQMQLCEL SLWDWIRERN ENSP00000199389/1-630 HLEESFTSTE ESSEENVNFL GQTEAQYHLM LHIQMQLCEL SLWDWIVERN ENSBTAP00000009691/1-632 DPEQNFESTE ESSEENLNLL GQTEVQYRLM LHIQMQLCEL SLWDWIAERD bmy_20985T0/1-419 DLEENFASTE ESSEENFNLL GQTEVQYHLM LHIQMQLCEL SLWDWITERN BACU012124/1-635 DLEENFASTE ESSEENFNLL GQTEVQYHLM LHIQMQLCEL SLWDWITERN 401 450 ENSTTRP00000004995/1-624 QQGRESMDES ACPYVMASVA TKIFQELVEG VFYIHNMGIV HRDLK----- ENSP00000199389/1-630 KRGREYVDES ACPYVMANVA TKIFQELVEG VFYIHNMGIV HRDLK----- ENSBTAP00000009691/1-632 GRGRRSVDES ACPYVMASVA TKIFRELVEG VFYIHNMGIV HRDLK----- bmy_20985T0/1-419 QQGRESMDES ACPYVMASVA TKIFQELVEG VFYIHNMGIV HRDLK----- BACU012124/1-635 QQGRESMDES ACPYVMASVA TKIFQELVEG VFYIHNMGIV HRDLKNTVEL 451 500 ENSTTRP00000004995/1-624 -------XXX XXXXXXXXQV K-GDFGLACA DIIQ-NTDWA NGNGKRTPTH ENSP00000199389/1-630 -------PRN IFLHGPDQQV KIGDFGLACT DILQKNTDWT NRNGKRTPTH ENSBTAP00000009691/1-632 -------PRN IFLHGPDQQV KIGDFGLACA DIIQKNTDWG SADGERAPTH bmy_20985T0/1-419 ---------- ---------- ---------- ---------- ---------- BACU012124/1-635 TCSVCLQPRN IFLHGPDQQV KIGDFGLACA DIIQ-NTDWA NGNGKRTPTH 501 550 ENSTTRP00000004995/1-624 TSRVGTCLYA SPEQLEGSEY DAKSDMYSLG VILLELFQPF GTEMERAHVL ENSP00000199389/1-630 TSRVGTCLYA SPEQLEGSEY DAKSDMYSLG VVLLELFQPF GTEMERAEVL ENSBTAP00000009691/1-632 TSRVGTCLYA SPEQLEGSEY DAKSDMYSLG VILLELFQPF GTEMERAHVL bmy_20985T0/1-419 ---------- ---------- ---------- ---------- ---------- BACU012124/1-635 TSRVGTCLYA SPEQLEGSEY DAKSDMYSLG VILLELFQPF GTEMERAHVL 551 600 ENSTTRP00000004995/1-624 MGLRTGQIPE SLSKRCPVQA KYIQHLTRKS SSQRPSAVQL LQSELFQNSG ENSP00000199389/1-630 TGLRTGQLPE SLRKRCPVQA KYIQHLTRRN SSQRPSAIQL LQSELFQNSG ENSBTAP00000009691/1-632 TGLRTGQIPE ALSKRCPVQA KYIQHLTRKN SAQRPSAIQL LQSELFQNSG bmy_20985T0/1-419 ---------- ---------- ---------- ---------- ---------- BACU012124/1-635 TGLRTGQIPE SLSKRCPVQA KYIQHLTRKN SSQRPSAVQL LQSELFQNSG 601 650 ENSTTRP00000004995/1-624 NVNLTLQMKI LEQEKEIEEL KKQLSLLSQD KGVKGDLKDG GVI- ENSP00000199389/1-630 NVNLTLQMKI IEQEKEIAEL KKQLNLLSQD KGVRDDGKDG GVG- ENSBTAP00000009691/1-632 NVNLTLQMKI LEQEKEIQEL RKQLSLLCQD KGVKGNKRDG GVPV bmy_20985T0/1-419 ---------- ---------- ---------- ---------- ---V BACU012124/1-635 NVNLTLQMKI LEQEKEIEEL KKQLSLLSQG KGVKRVT--- ----