KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:39:06 2014 Check: 00 ..
Name: ENSP00000386502/1-418 Len: 424 Check: 8383 Weight: 1.00
Name: ENSBTAP00000009694/1-424 Len: 424 Check: 9557 Weight: 1.00
Name: ENSTTRP00000004996/1-338 Len: 424 Check: 4477 Weight: 1.00
Name: bmy_20984T0/1-418 Len: 424 Check: 7173 Weight: 1.00
Name: BACU018998/1-342 Len: 424 Check: 3544 Weight: 1.00
//
1 50
ENSP00000386502/1-418 MGNITRKGSR DLVVDSAKSL EDGPSAALHS KLYEAIMRED CTTIEVLLRN
ENSBTAP00000009694/1-424 MGNITKRGSK GRAADGPKAL EGSTAATLHV QLCEAIMRQD CAALRALLRS
ENSTTRP00000004996/1-338 ---------- ---------- ---------- ---------- ----------
bmy_20984T0/1-418 MGDITKRGSR GLVADGAQAL EEGAVVSXHT RLYEAIQRED CTALWALLRS
BACU018998/1-342 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000386502/1-418 HPVNQPITIL PNSA-----S NRLLLTQPTE SIIPIHLAAK YHKAQSLLCL
ENSBTAP00000009694/1-424 HPVNQPMTIL TSSTGCSLAN SRLFLSQETL SFLPIHLAAK YRKAQSLLCL
ENSTTRP00000004996/1-338 ---------- ---------- -------QTQ SIIPI-LAAE YRKAQSLLCL
bmy_20984T0/1-418 QPVNEPMTVL ASST-----S YRLLLSQQTQ SIIPIYLAAE YRKAQSLLCL
BACU018998/1-342 ---------- ---------- MYFFPPKQTQ SIIPIYLAAE NRKAQSLLCL
101 150
ENSP00000386502/1-418 LRHGADPEVR DTTGLTTLNL MLLHWPVTST TWAKPGNRTH RILTDIQNSS
ENSBTAP00000009694/1-424 LEHGADPEAR DTQGFTTLHL MLLNWPITST TWTKPRNKIQ TMLTDVQRNA
ENSTTRP00000004996/1-338 LEHEVDPEVR DTRGLTTRHL MLLHWPITSA MRTKPGNRIQ RVLTDIQNNT
bmy_20984T0/1-418 LEYGADPEVR DTRGLTTLHL MLLHWPITST TWTKPGNRIQ RMLTDIQNDA
BACU018998/1-342 LEHSADPELR DTRGLTTLRL MLLHWPITST TWTKPGNRIQ RMLTDIQNDA
151 200
ENSP00000386502/1-418 ITCLRILCAH GAQVNTQGEI SNKRSPLHLA IAYGCYPVLS ILTQNGADVN
ENSBTAP00000009694/1-424 VLCLRILCAH GAQVNARVDS GHRHCPLHLA TIYGTHLVLS ILAQNGAQVN
ENSTTRP00000004996/1-338 VLCLRILCEH GAQVNARADS SNGHSRLRLA ITYGTYPVLS ILAHNGAQVN
bmy_20984T0/1-418 VLCLHILCER GAQVNARV-A DNWRSPLHLA ITYGTSPVLS ILAQNGAQVN
BACU018998/1-342 VLCLRILCEH GAQVNARV-A DNWRSPLHLA ITYGTSPVLS ILAQNGAQVN
201 250
ENSP00000386502/1-418 AINEASMTPL HMAANMLNKE MMETLIAYGA NVNCAVSSTG NTPLKLAVCT
ENSBTAP00000009694/1-424 AQNGSSMTPL HMAADILNKE MMQTLIAWGA SVNCAVSSTG NTALKLAVST
ENSTTRP00000004996/1-338 AINESSMTPL HMAADILNKQ VIETLTAHGA NVNCAVSSTG NTALKLAVCT
bmy_20984T0/1-418 AMNESSMTPL HVAADILNKE MMETLTAHGA NVNCAISSTG NTALKLAVCT
BACU018998/1-342 AMNESSMTPL HVAADILNKE MMEMLTAHGA NVNCAVSSTG NTALKLAVCT
251 300
ENSP00000386502/1-418 ASSKAGRLLG AGVSCIRLLL THGAKVNAQD YKGQTAIHEA CFGGREAIIN
ENSBTAP00000009694/1-424 ASSKAGRLLA AGLGCIRLLL VHGAQVNARD HDGQAAIHEA CFGGREVIIN
ENSTTRP00000004996/1-338 TSSN-GRLLA AGLSCIRLLL VHGAQVNTQD REGQAASHE- CFGGREA--N
bmy_20984T0/1-418 TSSKAGRLLA AGLSCTCLLL VHGAQVNTQD HEGQAAIHEA CFGGREAIIN
BACU018998/1-342 ASSKAGR--- -------LLL VYGAQVNTQD HEGQAAIHEA CFGGREAIIN
301 350
ENSP00000386502/1-418 LLLEFEANVN ILTRNGESPI YMYLQRSCNV RDTALLARLL YHTYPLRMTN
ENSBTAP00000009694/1-424 LLLEFEANVN ILTRNGESPI HMYLQRGSNI RDTALLARLL FRSYPLRLTN
ENSTTRP00000004996/1-338 LLLEFEANVN ILTRNGESLI YMYLQRGSNI RDAALLTRLL YHSYPLRLTN
bmy_20984T0/1-418 LLLEFEANVN ILTRNGESPI YMYLQRGSNI RDTALLTRLL YHSYPLRLTN
BACU018998/1-342 LLLEFEANVN ILTRNGDSPM YMYLLRGSNI RDTALLTRLL YHL-PLRLTN
351 400
ENSP00000386502/1-418 NQGILPAGIM LPEFRLLRDT LIKQSQKPLS LQGICKRNIR NIYGEKYKQH
ENSBTAP00000009694/1-424 NQGKLPAGIL LPEFHLLRET LLKLSQKPLS LEDICKRNVR NIYGEKHKQL
ENSTTRP00000004996/1-338 DQGILPAGIM LPEFHLLRET VIKLSQKPLS LEDNCKRNVR NICGEKQKQH
bmy_20984T0/1-418 NQGILPAGIM LPEFHLLRET SIKLSQKPLS LEDNCKRNVR NMYGEKYKQH
BACU018998/1-342 NQGILPAGIM LPEFHLLRET PIKLSQKPLS LEDNCKRNVR NIYGEKYKQH
401 450
ENSP00000386502/1-418 LKQFLPVTIW NSVYCCYDLA YTS-
ENSBTAP00000009694/1-424 LKRLLPGKIW NSVYGYHDLA HLLK
ENSTTRP00000004996/1-338 LKRLLPAKIW NSVSGYYGLT ----
bmy_20984T0/1-418 LKRLLPGKIW NSVYGYYDLA HLLK
BACU018998/1-342 LKRLLPGKIW NSVYGYYDLA YLLK