KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:06 2014 Check: 00 .. Name: bmy_21659T0/1-177 Len: 228 Check: 1653 Weight: 1.00 Name: ENSP00000369702/1-228 Len: 228 Check: 4542 Weight: 1.00 Name: ENSBTAP00000009698/1-228 Len: 228 Check: 4384 Weight: 1.00 Name: BACU006168/1-228 Len: 228 Check: 3213 Weight: 1.00 Name: ENSTTRP00000012292/1-228 Len: 228 Check: 3561 Weight: 1.00 // 1 50 bmy_21659T0/1-177 MCHVIVTCRS MLWTLLSIVV AFAELIAFMS ADWLIGKAKP RGSAEPGEQG ENSP00000369702/1-228 MCHVIVTCRS MLWTLLSIVV AFAELIAFMS ADWLIGKARS RGGVEPAGPG ENSBTAP00000009698/1-228 MCHVIVTCRS MLWTLLSIVV AFAELIAFMS ADWLIGKAKP RGSAEPGEQG BACU006168/1-228 MCHVIVTCRS MLWTLLSIVV AFAELIAFMS ADWLIGKAKP RGSAEPGEQG ENSTTRP00000012292/1-228 MCHVIVTCRS MLWTLLSIVV AFAELIAFMS ADWLIGKAKP RGSAEPSEQG 51 100 bmy_21659T0/1-177 GGSXEPHHPT LGIYARCIRN PGVQHFQRET LCGPYAETFG EIASGFWQAT ENSP00000369702/1-228 GGSPEPYHPT LGIYARCIRN PGVQHFQRDT LCGPYAESFG EIASGFWQAT ENSBTAP00000009698/1-228 AGTPEPYHPT LGIYARCIRN PGVQHLPRET LCGPYAESFG EIASGFWQAT BACU006168/1-228 GGSPEPHHPT LGIYARCIRN PGVQHFQRET LCGPYAETFG EIASGFWQAT ENSTTRP00000012292/1-228 GGSLEPHHPT LGIYARCIRN PGVQHFQRET LCGPYAETFG EIASGFWQAT 101 150 bmy_21659T0/1-177 AIFLAVGIFI LCMVALVSVF TMCVQSIMKK SIFNVCGLLQ GIAGGPMC-- ENSP00000369702/1-228 AIFLAVGIFI LCMVALVSVF TMCVQSIMKK SIFNVCGLLQ GIAGLFLILG ENSBTAP00000009698/1-228 AIFLAVGIFI LCTVALVSVF TMCVQSIMKK SIFNVCGLLQ GIAGLFLILG BACU006168/1-228 AIFLAVGIFI LCMVALVSVF TMCVQSIMKK SIFNVCGLLQ GIAGLFLILG ENSTTRP00000012292/1-228 AIFLAVGIFI LCMVALVSVF TMCVQSIMKK SIFNVCGLLQ GIAGLFLILG 151 200 bmy_21659T0/1-177 -VCGGEGNGP REMTEDLLHS HALFQ----- --WGIYS--- ---------- ENSP00000369702/1-228 LILYPAGWGC QKAIDYCGHY ASAYKPGDCS LGWAFYTAIG GTVLTFICAV ENSBTAP00000009698/1-228 LILYPAGWGC QKAIGYCGHY ASAYKPGDCS LGWAFYTAIG GTVLTFICAV BACU006168/1-228 LILYPAGWGC QKAIGYCGHY ASAYKPGDCS LGWAFYTAIG GTVLTFICAV ENSTTRP00000012292/1-228 LILYPAGWGC QKAIGYCGHY ASAYKPGDCS LGWAFYTAIG GTVLTFICAV 201 250 bmy_21659T0/1-177 ---------- ---------- -------- ENSP00000369702/1-228 FSAQAEIATS SDKVQEEIEE GKNLICLL ENSBTAP00000009698/1-228 FSAQAEIATS SDKVQEEIEE GKNLICLL BACU006168/1-228 FSAQAEIATS SDKVQEEIEE GKNLICLL ENSTTRP00000012292/1-228 FSAQAEIATS SDKVQEEIEE GKNLICLL