KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:07 2014 Check: 00 .. Name: ENSP00000327009/1-705 Len: 734 Check: 2657 Weight: 1.00 Name: ENSBTAP00000009702/1-704 Len: 734 Check: 949 Weight: 1.00 Name: ENSTTRP00000007862/1-720 Len: 734 Check: 448 Weight: 1.00 Name: bmy_15877T0/1-732 Len: 734 Check: 664 Weight: 1.00 Name: BACU014573/1-668 Len: 734 Check: 8411 Weight: 1.00 // 1 50 ENSP00000327009/1-705 -MTIEDLPDF PLEGNPLFGR YPFIFSASDT PVIFSISAAP MPSDCEFSFF ENSBTAP00000009702/1-704 -MTIEDLPDF PLEGSSLIGK YPFLFQGSDT PVIFSISAAP MPSDCEFSFF ENSTTRP00000007862/1-720 KMTIEDLPDF PLEGSSLIGR YPFLFQGSDT PVIFSISAAP MPSDCEFSFF bmy_15877T0/1-732 -MTIEDLPDF PLEGSSLIGR YPFLFQGSDT PVIFSISAAP MPSDCEFSFF BACU014573/1-668 ---------- ---------- ---------- ---------- MPSDCEFSFF 51 100 ENSP00000327009/1-705 DPNDASCQEI LFDPKTSVSE LFAILRQWVP QVQQNIDIIG NE-----ILK ENSBTAP00000009702/1-704 DPNDTSCQEI LFDPKTSVSE LFAILRQWVP QVQQNIDVIG NE-----ILK ENSTTRP00000007862/1-720 DPNDTSCQEI LFDPKTSVSE LFAILRQWVP QVQQNIDVIG NE-----ILK bmy_15877T0/1-732 DPNDTSCQEI LFDPKTSVSE LFAILRQWVP QVQQNIDVIG NEVFHGAILK BACU014573/1-668 DPNDTSCQEI LFDPKTSVSE LFAILRQWVP QVQQNIDVIG NE-----ILK 101 150 ENSP00000327009/1-705 RGCNVNDRDG LTDMTLLHYT CKSGAHGIGD VETAVKFATQ LIDLGADISL ENSBTAP00000009702/1-704 RGCNVNDRDG LTDMTLLHYT CKSGAHGIGD VDTAVKFATQ LIDLGADVSL ENSTTRP00000007862/1-720 RGCNVNDRDG LTDMTLLHYT CKSGAHGIGD VDTAVKFATQ LIDLGADVSL bmy_15877T0/1-732 RGCNVNDRDG LTDMTLLHYT CKSGAHGIGD VDTAVKFATQ LIDLGADVSL BACU014573/1-668 RGCNVNDRDG LTDMTLLHYT CKSGAHGIGD VDTAVKFATQ LIDLGADVSL 151 200 ENSP00000327009/1-705 RSRWTNMNAL HYAAYFDVPE LIRVILKTSK PKD---VDAT CSDFNFGTAL ENSBTAP00000009702/1-704 RSRWTNMNAL HYAAYFDVPE LIRVILKTSK PKD---VDAT CSDFNFGTAL ENSTTRP00000007862/1-720 RSRWTNMNAL HYAAYFDVPE LIRVILKTSK PKD---VDAT CSDFNFGTAL bmy_15877T0/1-732 RSRWTNMNAL HYAAYFDVPE LIRVILKTSK PKGKYYVDAT CSDFNFGTAL BACU014573/1-668 RSRWTNMNAL HYAAYFDVPE LVRVILKTSK PKGKYYVDAT CSDFNFGTAL 201 250 ENSP00000327009/1-705 HIAAYNLCAG AVKCLLEQGA NPAFRNDKGQ IPADVVPDPV DMPLEMADAA ENSBTAP00000009702/1-704 HIAAYNLCAG TVKCLLEHGA NPAFRNDKGQ IPADVVPDPV EMPLEMADAA ENSTTRP00000007862/1-720 HIAAYNLCAC TVKCLLEHGA NPAFRNDKGQ IPADVVPDPV EMPLEMADAA bmy_15877T0/1-732 HIAAYNLCAG TVKCLLEHGA NPAFRNDKGQ IPADVVPDPV EMPLEMADAA BACU014573/1-668 HIAAYNLCAG TVKCLLEHGA NPAFRNDKGQ IPADVVPDPV EMPLEMADAA 251 300 ENSP00000327009/1-705 ATAKEIKQML LDAVPLSCNI SKAMLPNYDH VTGKAMLTSL GLKLGDRVVI ENSBTAP00000009702/1-704 ATAKEIKQML LDAAPLSYDL SKPLLPNYDR VTSKAMLTSL GLKLGDRVVI ENSTTRP00000007862/1-720 ATAKEIKQML LDAVPLSCDL SKPLLPSYDR VTSKVMLTSL GLKLGDRVVI bmy_15877T0/1-732 ATAKEIKQML LDAVPLSCDL SKPLLPSYDR VTSKVMLTSL GLKLGDRVVI BACU014573/1-668 ATAKEIKQML LDAVPLSCDL SKPLLPNYDR VTSKVMLTSL GLKLGDRVVI 301 350 ENSP00000327009/1-705 AGQKVGTLRF CGTTEFASGQ WAGIELDEPE GKNNGSVGKV QYFKCAPKYG ENSBTAP00000009702/1-704 AGQKVGTLRF CGTTEFASGQ WAGIELDEPE GKNNGSVGKV QYFKCAPKYG ENSTTRP00000007862/1-720 ARQ-VGTLRF CGTTEFASGQ WAGIELDEPE GKNNGSVGKV QYFKCAPKYG bmy_15877T0/1-732 ARQKVGTLRF CGTTEFASGQ WAGIELDEPE GKNNGSVGKV QYFKCAPKYG BACU014573/1-668 ARQKVGTLRF CGTTEFASGQ WAGIELDEPE GKNNGSVGKV QYFKCAPKYG 351 400 ENSP00000327009/1-705 IFAPLSKISK AKGRRKNITH TPSTKAAVPL IRSQKIDVAH VTSKVNTGLM ENSBTAP00000009702/1-704 IFAPLSKISK AKDRRKNIAH TPSTK-AGPL IRSQKIDVAH VTSKVNTGLM ENSTTRP00000007862/1-720 IFAPLSKISK AKDRRKNTAH TPPTK-AVPL VRSQKIDVAH VTSKVHTGLM bmy_15877T0/1-732 IFAPLSKISK AKDRRKNTAH TPSTK-AVPL IRSQKIDVAH VTSKVNTGLM BACU014573/1-668 IFAPLSKISK AKDRRKNTAH TPSTK-AVPL IRSQKIDVAH VTSKVNTGLM 401 450 ENSP00000327009/1-705 TSKKDSASES TLSLPPGEEL KTVTEKDVAL LGSVSSCSST SSLEHRQSYP ENSBTAP00000009702/1-704 TSKKDSASES TLSLPPGEEL KTGAEKDVPL IGSISSSSSI SSLEHKQSLS ENSTTRP00000007862/1-720 TSKKDSASES TLSLPPGEEL KTGAEKDVTL LASVSSSSST SSLEHKQSHS bmy_15877T0/1-732 TSKKDSASES TLSLPPGEEL KTGAEKDVTL LGSVSSSSST SSLEHKQSHS BACU014573/1-668 TSKKDSASES TLSLPPGEEL KTGAEKDVTL LGSVSSSSST SSLEHKQSHS 451 500 ENSP00000327009/1-705 KKQNAISSNK KTMSKSPSLS SRASA----- ---------- -----GLNSS ENSBTAP00000009702/1-704 KKLNARGNNK KTMSKSPSLS SRASA----- ---------- -----GLNSS ENSTTRP00000007862/1-720 KTLNASGNNK KTMSKSPSVS SRASAGIYGF FN---QAFLV FFILVCLFEF bmy_15877T0/1-732 KKLNASGNNK KTMSKSPSVS SRASAVSLCF FSFPAPSLSP TNPKTGLNSS BACU014573/1-668 KKLNASGNNK KTMSKSPSVS SRASA----- ---------- -----GLNSS 501 550 ENSP00000327009/1-705 ATSTANNSRC EGELRLGERV LVVGQRLGTI RFFGTTNFAP GYWYGIELEK ENSBTAP00000009702/1-704 AASVANSGRC EGDLRIGDRV LVAGQRIGAI KFFGTTNFAP GYWYGIELEK ENSTTRP00000007862/1-720 LSNICSNARC EGELRLGDRV LVVGQRIGTV KFFGTTNFAP GY-YGIELDK bmy_15877T0/1-732 ATSVANNACC EGELCLGDRV LVVGQRTGTI KFFGTTNFAP GYWYGIELDK BACU014573/1-668 ATSVANNARC EGELHLGDRV LVVGQRTGTI KFFGTTNFAP GYWYGIELDK 551 600 ENSP00000327009/1-705 PHGKNDGSVG GVQYFSCSPR YGIFAPPSRV QRVTDSLDTL SEISSNKQNH ENSBTAP00000009702/1-704 PHGKNDGSVG GVQYFSCSPR YGIFAPPSRV QRVTDSLDTL SEISSNKQNH ENSTTRP00000007862/1-720 PHGKNDGSVG GVQYFSCSPR YGIFAPPSRV QRVTDSLDTL SEISSNKQNH bmy_15877T0/1-732 PHGKNDGSVG GVQYFSCSPR YGIFAPPSRV QRVTDSLDTL SEISSNKQNH BACU014573/1-668 PHGKNDGSVG GVQYFSCSPR YGIFAPPSRV QRVTDSLDTL SEISSNKQNH 601 650 ENSP00000327009/1-705 SYPGFRRSFS TTSASSQKEI NRRNAFSKSK AALRRSWSST PTAGGIEGSV ENSBTAP00000009702/1-704 SYPGFRRSFS TTSASSQKEI NRRNAFAKSK PTLHRSWSSS STAGGLEGSV ENSTTRP00000007862/1-720 SYPGFRRSFS TTSASSQKEI NRRNAFAKSK PALRRSWSSS TTAGGLEGRV bmy_15877T0/1-732 SYPGFRRSFS TTSASSQKEI NRRNAFAKSK PALRRSWSGS TTAGGLEGSV BACU014573/1-668 SYPGFRRSFS TTSASSQKEI NRRNAFAKSK PALRRSWSGS TTAGGLEGSV 651 700 ENSP00000327009/1-705 KLHEGSQVLL TSSNEMGTVR YVGPTDFASG IWLGLELRSA KGKNDGSVGD ENSBTAP00000009702/1-704 KLHEGSQVLL TSSNEMATVR YVGPTDFASG IWLGLELRSP KGKNDGAVGD ENSTTRP00000007862/1-720 RLHEGSQVLL TSSNEMGTVR YLGPTDFASG IWLGLELRSA KGKNDGAVGD bmy_15877T0/1-732 RLHEGSQVLL TSSSEMGTVR YVGPTDFASG IWLGLELRSA KGKNDGAVGD BACU014573/1-668 RLHEGSQVLL TSSSEMGTVR YVGPTDFASG IWLGLELRSA KGKNDGAVGD 701 750 ENSP00000327009/1-705 KRYFTCKPNH GVLVRPSRVT YRGINGSKLV DENC ENSBTAP00000009702/1-704 KRYFTCKPNH GVLVRPSRVT YRGINGSKLV DENC ENSTTRP00000007862/1-720 KRYFTCRPNH GVLVRPSRVT YRGINGSKLV DENC bmy_15877T0/1-732 KRYFSCRPNH GVLVRPSRVT YRGINGSKLV DENC BACU014573/1-668 KRYFSCRPNH GVLVRPSRVT YRGINGSKLV DENC