KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:10 2014 Check: 00 .. Name: ENSP00000351484/1-740 Len: 790 Check: 1622 Weight: 1.00 Name: ENSBTAP00000009725/1-744 Len: 790 Check: 9023 Weight: 1.00 Name: ENSTTRP00000000308/1-789 Len: 790 Check: 9245 Weight: 1.00 Name: bmy_10201T0/1-729 Len: 790 Check: 4676 Weight: 1.00 Name: BACU005310/1-718 Len: 790 Check: 350 Weight: 1.00 // 1 50 ENSP00000351484/1-740 MQWTKVLGLG LGAAALLGLG IILGHFAIPK KANSLAP--- --QDLDLEIL ENSBTAP00000009725/1-744 MQWVKVLGGV VGAAALLGLG IIVGHFAIPK GADSPAPSAS ASQDLDLKIL ENSTTRP00000000308/1-789 MQCVKVLGGV LGAAALLGLG IILGHFAIPK GTDLPAPSAS ASQDLDLEIL bmy_10201T0/1-729 MQCVKVLGGV LGAAALLGLG IILGHFAIPK GTDLPAPSAS ASQDLDLEIL BACU005310/1-718 MQCVKVLGGV LGAAALLGLG IILGHFAIPK GTDLPAPSAS ASQDLDLEIL 51 100 ENSP00000351484/1-740 ETVMGQLDAH RIRENLRELS REPHLASSPR DEDLVQLLLQ RWKDPESGLD ENSBTAP00000009725/1-744 ETVIEQLDAN RIRENLRELS KEPHLATTPR DEALVQLLLQ RWQDPESGLD ENSTTRP00000000308/1-789 EAVMGQLDAN RIRENLRELS KEPHLATSPR DEALVQLLLR RWQDPESGLD bmy_10201T0/1-729 EAVMGQLDAN RIRENLRELS KEPHLATSPR DEALVQLLLR RWQDPESGLD BACU005310/1-718 EAVMGQLDAS RIRENLRELS KEPHLATSPR DEALVQLLLR RWQDPESGLD 101 150 ENSP00000351484/1-740 SAEASTYEVL LSFPSQEQPN VVDIVGPTGG IIHSCHRTEE NVTGEQGGPD ENSBTAP00000009725/1-744 SARTTEYEVL LSFPSGEQPN RVAVVNSTGA ILFSCRHSEE NLTGEQGGPN ENSTTRP00000000308/1-789 SAGTSEYEVL LSFPSQKQPN RVDVVGPAGD ILFSSQRSEE NLTGEQGDPN bmy_10201T0/1-729 SAGTSEYEVL LSFPSQEQPN RVDVVGPAGD ILFSSQRSEE NLTGEQGDPN BACU005310/1-718 SAGTSEYEVL LSFPSQEQPN RVDVVGPAGD ILFSSQRSEE NLTGEQGDPN 151 200 ENSP00000351484/1-740 VVQPYAAYAP SGTPQGLLVY ANRGAEEDFK ELQTQGIKLE GTIALTRYGG ENSBTAP00000009725/1-744 VVPPYAAYAP PGTPQGPLVY ANQGSEEDFK ELQNKGVKLQ DSIVLTRYGG ENSTTRP00000000308/1-789 VVPPYAAYAP PGTPQGLLVY ANRGSEEDFM ELYQQGIKLQ DSIVLTRYWG bmy_10201T0/1-729 VVPPYAAYAP PGTPQGLLXY ANRGSEEDFM ELYHQGIKLQ DSIVLTRYGG BACU005310/1-718 VVPPYAAYAP PGTPQGLLVY ANRGSEEDFM ELYHQGIKLQ DSIVLTRYGG 201 250 ENSP00000351484/1-740 VGRGAKAVNA AKHGVAGVLV YTDPADINDG LSSPDETFPN SWYLPPSGVE ENSBTAP00000009725/1-744 VGRGAKAVNA AKYGVAGVLV YTDPKDINDG KSLPNETFPH SWCLPPSGVE ENSTTRP00000000308/1-789 VGRRAKAVNA AKYGVAGVLV YTDPADINDG KSLPNETFPH SWGLPPSGVE bmy_10201T0/1-729 VGRRAKAVNA AKYGVAGVLV YTDPADINDG KSLPNXTFPH SWGLPPSGVE BACU005310/1-718 VGRRAKAVNA AKYGVAGVLV YTDPADINDG KSLPNETFPH SWGLPPSGVE 251 300 ENSP00000351484/1-740 RGSYYEYFGD PLTPYLPAVP SSFRVDLANV SGFPPIPTQP IGFQDARDLL ENSBTAP00000009725/1-744 RGSYFEYFGD PLTPYLPAMP SSFRLNSDNA SGFPPIPIQP IGFEDAQVLL ENSTTRP00000000308/1-789 RGSYFEYFGD PLTPYLPANP SSFRLDSDNA SGFPPIPTQP IGFKDAEVLL bmy_10201T0/1-729 RGSYFEYFGD PLTPYLPANP SSFRLDSDNA SGFPPIPTQP IGFKDAEVLL BACU005310/1-718 RGSYFEYFGD PLTPYLPANP SSFRLDSDNA SGFPPIPTQP IGFKDAEVLL 301 350 ENSP00000351484/1-740 CNLNGTLAPA TWQGALGCHY RLGPGFRPDG DFPADSQVNV SVYNRLELRN ENSBTAP00000009725/1-744 CNLGGNLAPA DWQGGLGCDY NLGPGFRSNG IFPEDGQVNV SVHNRLELRN ENSTTRP00000000308/1-789 CNLQGASAPA AWQGALGCDY KLGPGFRSDG IFPAGSQVNV SVYNRLELRN bmy_10201T0/1-729 CNLQGTSAPA AWQGALGCDY KLGPGFRSDG TFPAGSLAAP PTL------- BACU005310/1-718 CNLQGTSAPA AWQGALGCDY KLGPGFRSDG IFPAGSQVNV SVYNRLELRN 351 400 ENSP00000351484/1-740 SSNVLGIIRG AV-------- ---------- ---------- ---------- ENSBTAP00000009725/1-744 SSNVLGIIRG AV-------- ---------- ---------- ---------- ENSTTRP00000000308/1-789 SSNVLGIIRG AVEPGEPASC SLRPRTRPCS ERPPRPLPSL AAPPTLAPPL bmy_10201T0/1-729 -APPLGCLTL FL-------- ---------- ---------- ---------- BACU005310/1-718 SSNVLGIIRG AV-------- ---------- ---------- ---------- 401 450 ENSP00000351484/1-740 -------EPD RYVLYGNHRD SWVHGAVDPS SGTAVLLELS RVLGTLLKKG ENSBTAP00000009725/1-744 -------EPD RYVLYGNHRD SWVHGAVDPS TGTAVLLELS RVLGTLLKKG ENSTTRP00000000308/1-789 GRLTLLLPPD RYVLYGNHRD SWVHGAVDPS SGTAVLLELS RVLGTLLKKG bmy_10201T0/1-729 -------PPD RYVLYGNHRD SWVHGAVDPS SGTAVLLELS RVLGTLLKKG BACU005310/1-718 -------EPD RYVLYGNHRD SWVHGAVDPS SGTAVLLELS RVLGTLLKKG 451 500 ENSP00000351484/1-740 TWRPRRSIVF ASWGAEEFGL IGSTEFTEEF FNKLQERTVA YINVDISVFA ENSBTAP00000009725/1-744 TWRPRRSIVF ASWGAEEFGL IGSTEFTEEF FSKLQERAVA YINVDISVFA ENSTTRP00000000308/1-789 TWRPRRSIVF ASWGAEEFGL IGSTEFTEES FSKLQ-RAVA YINVDISVFA bmy_10201T0/1-729 TWRPRRSIVF ASWGAEEFGL IGSTEFTEEL FSKLQERAVA YINVDISVFA BACU005310/1-718 TWRPRRSIVF ASWGAEEFGL IGSTEFTEEL FSKLQERAVA YINVDISVF- 501 550 ENSP00000351484/1-740 NATLRVQGTP PVQSVVFSAT KEIRSPGPGD LSIYDNWIRY FNRSSPVYGL ENSBTAP00000009725/1-744 NATLRVQGTP PIQSVVFSAA KQISAPGSSG LSIYDNWIRY YNRSSSVYGL ENSTTRP00000000308/1-789 NATLRAQGTP PVQSVIFSAA KQIRAPGPGS LSIYDNWIRY SNRSSPVYGL bmy_10201T0/1-729 NATLRAQGTP PLQSVIFSAT KQIPAPGPSS LSIYDNWIRY SNRSSPVYGL BACU005310/1-718 ---------- ---------- ------GPSS LSIYDNWIRY SNRSSPVYGL 551 600 ENSP00000351484/1-740 VPSLGSLGAG SDYAPFVHFL GISSMDIAYT YDRSKTSARI YPTYHTAFDT ENSBTAP00000009725/1-744 VPSVGTLGAG SDYAPFIHFL GISSMDIAYT YDRSKTSARI YPTYHTAFDT ENSTTRP00000000308/1-789 VPSLGTLGAS SDYAPFIHFL GISSMDIAYT YDRSKTSARI YPTYHTAFDT bmy_10201T0/1-729 VPSLGTLGAG SDYAPFIHFL GISSMDIAYT YDRSKTSARI YPTYHTAFDT BACU005310/1-718 VPSLGTLGAG SDYAPFIHFL GISSMDIAYT YDRSKTSARI YPTYHTAFDT 601 650 ENSP00000351484/1-740 FDYVDKFLDP GFSSHQAVAR TAGSVILRLS DSFFLPLKVS DYSETLRSFL ENSBTAP00000009725/1-744 FDYVDKFLDP GFSSHQAVAR TAGSVLLRLS DSLFLPLNVS DYSETLRSFL ENSTTRP00000000308/1-789 FDYVDKFVDP GFSSHQAVAQ TVGSVLLRLS DSLFLPLNVS DYSETLRSLL bmy_10201T0/1-729 FDYVD----- ---NHQAVAQ TAGSVLLRLS DSLFLPLNVS DYSETLRSFL BACU005310/1-718 FDYVDKFVDP GFSSHQAVAQ TAGSVLLRLS DSLFLPLNVS DYSETLRSFL 651 700 ENSP00000351484/1-740 QAAQQDLGAL LEQHSISLGP LVTAVEKFEA EAAALGQRIS TLQKGSPDPL ENSBTAP00000009725/1-744 QAA-EDLRVL LEQHGISLGP LVTAVERFEG AATAFNQRIA TLREGTPDPL ENSTTRP00000000308/1-789 QAAQQDLGGL LEQHNISLGP LVTAVEKFEE AATVLGQHVS ALQKGTPDPL bmy_10201T0/1-729 QAAQQDLGGL LEQHNISLGP LVTAVEKFEE AATVLGQHIS ALRKGTPDPL BACU005310/1-718 QAAQQDLGGL LEQHNISLGP LVTAVEKFEE AATVLGQHIS ALQKGTPDPL 701 750 ENSP00000351484/1-740 QVRMLNDQLM LLERTFLNPR AFPEERYYSH VLWAPRTGSV VTFPGLSNAC ENSBTAP00000009725/1-744 QVRMINDQLM LLERTFLNSQ AFPEERYYSH VLWAPRTGSV ATFPGLSNAY ENSTTRP00000000308/1-789 QVRMLNDQLM LLERTFLNSR AFPEERYYSH VLWAPRTGSV PTFPGLSNAC bmy_10201T0/1-729 QVRMLNDQLM LLERAFLNSR AFPEERYYSH VLWAPRTXSV ATFPGLSNAC BACU005310/1-718 QVRMLNDQLM LLERAFLNSR AFPEERYYSH VLWAPRTGSA ATFPGLSNAC 751 800 ENSP00000351484/1-740 SRARDTASGS EAWAEVQRQL SIVVTALEGA AATLRPVADL ENSBTAP00000009725/1-744 SQAKNTGHEP AAWAEVQRQL SIVVAALEGA AATLRPVADL ENSTTRP00000000308/1-789 SKAMNTGPGS AAWAEVQRQL SILVVALEGA AATLRPVADL bmy_10201T0/1-729 SKAMNTGPGS AAWAEVKRQF SILVVALEGA AATLRPVADL BACU005310/1-718 SKAMNTGPGS AAWAEVKRQL SILVVALEGA AATLRPVADL