KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:39:11 2014 Check: 00 .. Name: ENSP00000469517/1-142 Len: 638 Check: 3600 Weight: 1.00 Name: ENSTTRP00000007464/1-617 Len: 638 Check: 5778 Weight: 1.00 Name: bmy_08444T0/1-638 Len: 638 Check: 5631 Weight: 1.00 Name: ENSBTAP00000009736/1-619 Len: 638 Check: 6695 Weight: 1.00 // 1 50 ENSP00000469517/1-142 ---------- ---------- --MGPHRLWM CL-------- ---SACCPAV ENSTTRP00000007464/1-617 MLWQALCRFG QKLVRRRTLE PGMAETRLAR CLTTLDLVAL GVGSTLGAGV bmy_08444T0/1-638 MLWQALCRFG QKLVRRRTLE PGMAETRLAR CLTTLDLVAL GVGSTLGAGV ENSBTAP00000009736/1-619 MLWQALCRFG QKLVRRRTLE PGMAETRLAR CLSTLDLVAL GVGSTLGAGV 51 100 ENSP00000469517/1-142 HAMPG----- -IGP------ ---------- ---------- ---------- ENSTTRP00000007464/1-617 YVLAGEVAKD KAGPSIVICF LVAALSSMLA GLCYAEFGAR VPRSGSAYLY bmy_08444T0/1-638 YVLAGEVAKD KAGPSIVICF LVAALSSMLA GLCYAEFGAR VPRSGSAYLY ENSBTAP00000009736/1-619 YVLAGEVAKD KAGPSIVICF LVAALSSMLA GLCYAEFGAR VPRSGSAYLY 101 150 ENSP00000469517/1-142 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007464/1-617 SYVTVGELWA FTTGWNLILS YVIGTASVAR AWDSSFDYLI GNHISPTLQG bmy_08444T0/1-638 SYVTVGELWA FTTGWNLILS YVIGTASVAR AWSSAFDNLI GNHISQTLQG ENSBTAP00000009736/1-619 SYVTVGELWA FTTGWNLILS YVIGTASVAR AWSSAFDNLI GNHISQTLQG 151 200 ENSP00000469517/1-142 ---------L AQTPVLW--- ---------- ---------- ---------- ENSTTRP00000007464/1-617 -ISLHIPHVL AEYPTFFAMC LVLVPLXXXX XXXXXXXXXX XXXXXXXXXX bmy_08444T0/1-638 SISLHVPHVL AEYPDFFAMG LVLLLTGLLA LGASESALVT KVFTVVNLLV ENSBTAP00000009736/1-619 SISLHVPRVL AEYPDFFAMG LVLLLTGLLA LGASESALVT KVFTVVNLLV 201 250 ENSP00000469517/1-142 ---------- RADLHR---- ---------- ---------- ---------- ENSTTRP00000007464/1-617 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08444T0/1-638 LGFVIISGFI KGDLHNWKLT EEDYKLAVAG LNDTYSLGPL GSGGFVPFGF ENSBTAP00000009736/1-619 LGFVIISGFV KGDLHNWKLT EEDYKLAVAG LNDTSSLGPL GSGGFVPFGF 251 300 ENSP00000469517/1-142 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007464/1-617 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08444T0/1-638 EGILRGAATC FYAFVGFDCI ATTGEEAQNP QRSIPTGIVI SLFVCFSAYF ENSBTAP00000009736/1-619 EGILRGAATC FYAFVGFDCI ATTGEEAQNP QRSIPTGIVI SLFVCFLAYF 301 350 ENSP00000469517/1-142 ---------- ---------- ---------- ---SGCVAAG AHCGIH---- ENSTTRP00000007464/1-617 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08444T0/1-638 GVSSALTLMM PYYQLQPESP LPEAFLYTGW APARYVVAIG SLCALSTSLL ENSBTAP00000009736/1-619 GISSALTLMM PYYQLQPKSP LPEAFLYTGW APARYVVAIG SLCALSTSLL 351 400 ENSP00000469517/1-142 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007464/1-617 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXFMAFL bmy_08444T0/1-638 GSMFPMPRVI YAMAEDGLLF RVLARIYTGT HTPIVATVVS GIIAAFMAFL ENSBTAP00000009736/1-619 GSMFPMPRVI YAMAEDGLLF RGLARIHTST HTPIVATVVS GIIAAFMAFL 401 450 ENSP00000469517/1-142 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007464/1-617 FELTDLVDLM SIGTLLAYSL VAICVLILRY QPDQEMRNEE GEVELQEER- bmy_08444T0/1-638 FELTDLVDLM SIGTLLAYSL VAICVLILRY QPDQEMRNEE GEVELQEEKI ENSBTAP00000009736/1-619 FELTDLVDLM SIGTLLAYSL VATCVLILRY QPDREMRNEE DEVELQEEKI 451 500 ENSP00000469517/1-142 ---------- -FHRLETAPE QHS------- ---------- ---------- ENSTTRP00000007464/1-617 SEAEKLTLQG LFCPLNSIPT PLSGQVVYVC SSLL------ ------ALLL bmy_08444T0/1-638 HEAEKLTLQG LFCPLNSIPT PLSGQVVYVC SSLLELVLMF LNLTLEALLL ENSBTAP00000009736/1-619 PEAEKLTLQG LFCPFNSIPT PVSGQVVYVC SSLL------ ------ALLL 501 550 ENSP00000469517/1-142 ---------- --SLLQGPPV ACS------- ---------- ---------- ENSTTRP00000007464/1-617 SVLCLVLAQW STPLLSGDPV WIAVFVLLLM LITGITGVIW RQPQSSTPLH bmy_08444T0/1-638 SVLCLVLAQW SNPLLSGDPV WIAVFVLLLT LITGITGVIW RQPQSSTPLH ENSBTAP00000009736/1-619 SVLCLVLAQW SIPLLSGDPV WIAVVVLLLM LIAGITGVIW RQPQSSAELH 551 600 ENSP00000469517/1-142 ---------P LVSISAHVYL MMQMTTETWA QCGVWMLIG- ------FAMY ENSTTRP00000007464/1-617 FKVPALPLLP LMSIFVNIYL MMQMTAGTWA RFGVWMLIG- ------FAIY bmy_08444T0/1-638 FKVPALPLLP LVSIFVNIYL MMQMTAGTWA RFGVWMLIGS YLSLLGFAIY ENSBTAP00000009736/1-619 FKVPALPFLP LMSIFVNIYL MMQMTAGTWA RFGVWMLIG- ------FAIY 601 650 ENSP00000469517/1-142 FGYGIPHSLE ---NNQQPPA SSSQTPHENI PSPLLN-- ENSTTRP00000007464/1-617 FGYGMQHSLE EVKSDQPPLK SRAKTVDLDL SSACTHSI bmy_08444T0/1-638 FGYGMQHSLE EVKSDQPPLK SRAKTVDLDL SSACTHSI ENSBTAP00000009736/1-619 FGYGMRHSLE EVKSDQPSLK SRARTVDLDL SSACVHSI