KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:39:14 2014  Check: 00 ..

 Name: ENSP00000249075/1-202     Len:    228  Check:  191  Weight:  1.00
 Name: bmy_01612T0/1-226         Len:    228  Check:  3775  Weight:  1.00
 Name: BACU003336/1-202          Len:    228  Check:  9719  Weight:  1.00
 Name: ENSTTRP00000001444/1-202  Len:    228  Check:  9083  Weight:  1.00
 Name: ENSBTAP00000009761/1-202  Len:    228  Check:  1978  Weight:  1.00

//


                          1                                                   50
ENSP00000249075/1-202     --MKVLAAGV VPLLLVLHWK HGAGSPLPIT PVNATCAIRH PCHNNLMNQI 
bmy_01612T0/1-226         MAPSCLFPGV VPLLLVLHWK HGAGSPLPIT PVNATCATRH PCHSNLMNQI 
BACU003336/1-202          --MKVLAAGV VPLLLVLHWK HGAGSPLPIT PVNATCATRH PCHSNLMNQI 
ENSTTRP00000001444/1-202  --MKVLAAGV VPLLLVLHWK HGAGSPLPIT PVNATCATRH PCHSNLMNQI 
ENSBTAP00000009761/1-202  --MKVLAAGV VPLLLVLHWK HGAGSPLPIT PVNATCATRH PCPSNLMNQI 


                          51                                                 100
ENSP00000249075/1-202     RSQLAQLNGS ANALFILY-- ---------- ---------- --YTAQGEPF 
bmy_01612T0/1-226         KNQLAQLNSS AKALFILYGA QLDRGRAARR RGCLALLALG FLHLVEGE-- 
BACU003336/1-202          KNQLTQLNSS AKALFILY-- ---------- ---------- --YTAQGEPF 
ENSTTRP00000001444/1-202  KNQLAQLNSS AKALFILY-- ---------- ---------- --YTAQGEPF 
ENSBTAP00000009761/1-202  RNQLGQLNSS ANSLFILY-- ---------- ---------- --YTAQGEPF 


                          101                                                150
ENSP00000249075/1-202     PNNLDKLCGP NVTDFPPFHA NGTEKAKLVE LYRIVVYLGT SLGNITRDQK 
bmy_01612T0/1-226         ADERQRRRRP NVTDFPPFHA NGTERARLVE LYRIIAYLGA SLGNITRDQK 
BACU003336/1-202          PNNLDKLCSP NVTDFPPFHA NGTERARLVE LYRIIAYLGA SLGNITRDQK 
ENSTTRP00000001444/1-202  PNNLDKLCSP NVTDFPPFHA NGTERARLVE LYRIIAYLGA SLGNITRDQK 
ENSBTAP00000009761/1-202  PNNLDKLCSP NVTDFPPFHA NGTEKARLVE LYRIIAYLGA SLGNITRDQK 


                          151                                                200
ENSP00000249075/1-202     ILNPSALSLH SKLNATADIL RGLLSNVLCR LCSKYHVGHV DVTYGPDTSG 
bmy_01612T0/1-226         VLNPSAHSLH SKLNATADVM RGLLSNVLCR LCSKYHVAHV DVAYGPDTSG 
BACU003336/1-202          VLNPSAHSLH SKLNATADIM RGLLSNVLCR LCSKYHVAHV DVAYGPDTSG 
ENSTTRP00000001444/1-202  VLNPSAHSLH SKLNATADVM RGLLSNVLCR LCSKYHVAHV DVAYGPDTSG 
ENSBTAP00000009761/1-202  VLNPYAHGLH SKLSTTADVL RGLLSNVLCR LCSKYHVSHV DVTYGPDTSG 


                          201                                                250
ENSP00000249075/1-202     KDVFQKKKLG CQLLGKYKQI IAVLAQAF 
bmy_01612T0/1-226         KDVFQKKKLG CQLLGKYKQV IAVMAQAF 
BACU003336/1-202          KDVFQKKKLG CQLLGKYKQV IAVVAQAF 
ENSTTRP00000001444/1-202  KDVFQKKKLG CQLLGKYKQV IAVVAQAF 
ENSBTAP00000009761/1-202  KDVFQKKKLG CQLLGKYKQV IAVLAQAF