KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:15 2014 Check: 00 .. Name: ENSTTRP00000004699/1-1010 Len: 1090 Check: 4935 Weight: 1.00 Name: ENSBTAP00000009766/1-971 Len: 1090 Check: 4418 Weight: 1.00 Name: ENSP00000369325/1-1030 Len: 1090 Check: 1852 Weight: 1.00 Name: bmy_18144T0/1-875 Len: 1090 Check: 2883 Weight: 1.00 Name: BACU004919/1-837 Len: 1090 Check: 3394 Weight: 1.00 // 1 50 ENSTTRP00000004699/1-1010 MKIPNIGNVM NKFEILGVVG EGAYGVVLKC RHKETHEIVA IKKFKDSEEN ENSBTAP00000009766/1-971 ---------- ---------- ---------- ---------- --------EN ENSP00000369325/1-1030 MKIPNIGNVM NKFEILGVVG EGAYGVVLKC RHKETHEIVA IKKFKDSEEN bmy_18144T0/1-875 ---------- ---------- ---------- ---------- ---------- BACU004919/1-837 MKIPNIGNVM NKFEILGVVG EGAYGVVLKC RHKETHEIVA IKKFKDSEEN 51 100 ENSTTRP00000004699/1-1010 EEVKETTLRE LKMLRTLKQE NIVELKEAFR RRGKLYLVFE YVEKNMLELL ENSBTAP00000009766/1-971 EEVKETTLRE LKMLRTLKQE NIVELKEAFR RRGKLYLVFE YVEKNMLELL ENSP00000369325/1-1030 EEVKETTLRE LKMLRTLKQE NIVELKEAFR RRGKLYLVFE YVEKNMLELL bmy_18144T0/1-875 ---------- ---------- ---------- ---------- -----MLELL BACU004919/1-837 EEVKETTLRE LKMLRTLKQE NIVELKEAFR RRGKLYLVFE YVEKNMLELL 101 150 ENSTTRP00000004699/1-1010 EEMPNGVPPE KVKSYIYQLI KAIHWCHKND IVHRDIKPEN LLISHNDVLK ENSBTAP00000009766/1-971 EEMPNGVPPE KVKSYIYQLI KAIHWCHKND IVHRDIKPEN LLISHNDVLK ENSP00000369325/1-1030 EEMPNGVPPE KVKSYIYQLI KAIHWCHKND IVHRDIKPEN LLISHNDVLK bmy_18144T0/1-875 EEMPNGVPPE KVKSYIYQLI KAIHWCHKND IVHRDIKPEN LLISHNDVLK BACU004919/1-837 EEMPNGVPPE KVKSYIYQLI KAIHWCHKND IVHRDIKPEN LLISHNDVLK 151 200 ENSTTRP00000004699/1-1010 LCDFGFARNL SEGNNANYTE YVATRWYRSP ELLLGAPYGK SVDMWSVGCI ENSBTAP00000009766/1-971 LCDFGFARNL SEGNNANYTE YVATRWYRSP ELLLGAPYGK SVDMWSVGCI ENSP00000369325/1-1030 LCDFGFARNL SEGNNANYTE YVATRWYRSP ELLLGAPYGK SVDMWSVGCI bmy_18144T0/1-875 LCDFGFARNL SEGNNANYTE YVATRWYRSP ELLLGAPYGK SVDMWSVGCI BACU004919/1-837 LCDFGFARNL SEGNNANYTE YVATRWYRSP ELLLGAPYGK SVDMWSVGCI 201 250 ENSTTRP00000004699/1-1010 LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXFP ENSBTAP00000009766/1-971 LGELSDGQPL FPGESEIDQL FTIQKVLGPL PSEQMKLFYS NPRFHGLRFP ENSP00000369325/1-1030 LGELSDGQPL FPGESEIDQL FTIQKVLGPL PSEQMKLFYS NPRFHGLRFP bmy_18144T0/1-875 LGELSDGQPL FPGESEIDQL FTIQKVLGPL PPEQMKLFYS NPRFHGLRFP BACU004919/1-837 LGELSDGQPL FPGESEIDQL FTIQKVLGPL PPEQMKLFYS NPRFHGLRFP 251 300 ENSTTRP00000004699/1-1010 AVNHPQSLER RYLGILNSVL LDLMKNLLKL DPADRYLTEQ CLNHPTFQTQ ENSBTAP00000009766/1-971 AVNHPQSLER RYLGILNSVL LDLMKNLLKL DPADRYLTEQ CLNHPTFQTQ ENSP00000369325/1-1030 AVNHPQSLER RYLGILNSVL LDLMKNLLKL DPADRYLTEQ CLNHPTFQTQ bmy_18144T0/1-875 AVNHPQSLER RYLGILNSVL LDLM----KL DPADRYLTEQ CLNHPTFQTQ BACU004919/1-837 AVNHPQSLER RYLGILNSVL LDLMKNLLKL DPADRYLTEQ CLNHPTFQTQ 301 350 ENSTTRP00000004699/1-1010 RLLDRSPSRS AKRKPYHVES STLSNRNQAS KSAALQSHHR SNSKDIQNLG ENSBTAP00000009766/1-971 RLLDRSPSRS AKRKPYHVNN W-FPMRNQAS KSAALQSHHR SNSKDIQNLG ENSP00000369325/1-1030 RLLDRSPSRS AKRKPYHVES STLSNRNQAG KSTALQSHHR SNSKDIQNLS bmy_18144T0/1-875 RLLDRSPSRS AKRKPYHVES STLSNRNQAS KSAALQSHHR SNSKDIQNLG BACU004919/1-837 RLLDRSPSRS AKRKPYHVES STLSNRNQAS KSAALQSHHR SNSKDIQNLG 351 400 ENSTTRP00000004699/1-1010 VGLPRADEGL PANESFLNGN LAGATLSPMH TKTYQAGSQP GPTSKDLTNN ENSBTAP00000009766/1-971 VGLPRADEGL PANESFLNGN LAGATLSPMH TKTYQAGSQP GSTSKDLTNN ENSP00000369325/1-1030 VGLPRADEGL PANESFLNGN LAGASLSPLH TKTYQASSQP GSTSKDLTNN bmy_18144T0/1-875 VGLPRADEGL PANESFLNGN LAGATLSPMH TKTYQAGSQP GSTSKDLTNN BACU004919/1-837 VGLPRADEGL PANESFLNGN LAGATLSPMH TKTYQAGSQP GSTSKDLTNN 401 450 ENSTTRP00000004699/1-1010 NIPHLLSPKE AKSKTEFDFN IDPKPSEGPG TKYLKSSSRS QQNRHSFMES ENSBTAP00000009766/1-971 NIPHLLSPKE AKSKTEFDFN IDPKPSDGPG TKYLKSSSRS QQNRHSFMES ENSP00000369325/1-1030 NIPHLLSPKE AKSKTEFDFN IDPKPSEGPG TKYLKSNSRS QQNRHSFMES bmy_18144T0/1-875 NIPHLLSPKE AKSKTEFDFN IDPKPSEGPG TKYLKSSSRS QQNRHSFMES BACU004919/1-837 NIPHLLSPKE AKSKTEFDFN IDPKPSEGPG TKYLKSSSRS QQNRHSFMES 451 500 ENSTTRP00000004699/1-1010 SQSKAGTLQP SEKQSRHSYI DTIPQSFRSP SYRTKAKSHG ALSDSKSVSN ENSBTAP00000009766/1-971 SQSKAGTLQP GEKQSRHSYI DTIPQSSRSP SYRTKAKSHG ALSDSKSVSN ENSP00000369325/1-1030 SQSKAGTLQP NEKQSRHSYI DTIPQSSRSP SYRTKAKSHG ALSDSKSVSN bmy_18144T0/1-875 SQSKAGTLQP SEKQSRHSYI DTIPQSSRSP SYRTKAKSHG ALSDSKSVSN BACU004919/1-837 SQSKAGTLQP SEKQSRHSYI DTIPQSSRSP SYRTKAKSHG ALSDSKSVSN 501 550 ENSTTRP00000004699/1-1010 LSEARAQIAE SSTSRYFPSS CLDLNSPTSP TLTRHSDTRT LLSPSGRNNR ENSBTAP00000009766/1-971 LSEARAQIAE SSTSRYFPSS CLDLNSPTSP TPTRHGDTRT LLSPSGRNNR ENSP00000369325/1-1030 LSEARAQIAE PSTSRYFPSS CLDLNSPTSP TPTRHSDTRT LLSPSGRNNR bmy_18144T0/1-875 LSEARAQIAE SSTSRYFPSS CLDLNSPTSP TLTRHSDTRT LLSPSGRNNR BACU004919/1-837 LSEARAQITE SSTSRYFPSS CLDLNSPTSP TLTRHSDTRT LLSPSGRNNR 551 600 ENSTTRP00000004699/1-1010 SEGTLDSRRT TTRHSKTMEE LKLPEHMDSS HSHSLSAPHE SFSYGLGYTS ENSBTAP00000009766/1-971 SEGTLDSRRT TTRHSKTMEE LKLPEHMDSS HSHSLSAPHE SFSYGLGYTS ENSP00000369325/1-1030 NEGTLDSRRT TTRHSKTMEE LKLPEHMDSS HSHSLSAPHE SFSYGLGYTS bmy_18144T0/1-875 SEGTLDSRRT TTRHSKTMEE LKLPEHMDSS HSHSLSAPHE SFSYGLGYTS BACU004919/1-837 SEGTLDSRRT TTRHSKTMEE LKLPEHMDSS HSHSLSAPHE SFSYGLGYTS 601 650 ENSTTRP00000004699/1-1010 PFSSQQRPHR HSMYVTRDKV RAKGLDGSLS VGQGMAARAN SLQLLSP--- ENSBTAP00000009766/1-971 PFSSQQRPHR HSMYVTRDKV RAKGLDGSLS IGQGMAARAN SLQLLSPQVR ENSP00000369325/1-1030 PFSSQQRPHR HSMYVTRDKV RAKGLDGSLS IGQGMAARAN SLQLLSP--- bmy_18144T0/1-875 PFSSQQRPHR HSMYVTRDKV RAKGLDGSLS VGQGMAARAN SLQLLSPQEQ BACU004919/1-837 PFSSQQRPHR HSMYVTRDKV RAKGLDGSLS VGQGMAARAN SLQLLSP--- 651 700 ENSTTRP00000004699/1-1010 ---------- ---------- QPGEQLPPEM TVARSSVKES SREGTTSFHS ENSBTAP00000009766/1-971 LRALTRCVGS SGEDGSDVEV EPGEQLPPEM TVARSSVKES SREGTSSFHV ENSP00000369325/1-1030 ---------- ---------- QPGEQLPPEM TVARSSVKET SREGTSSFHT bmy_18144T0/1-875 DTLI------ ---NPLKFDF QPGEQLPPEM TVARSSVKES SREGTSSFHA BACU004919/1-837 ---------- ---------- QPGEQLPPEM TVARSSVKES SREGTSSFHA 701 750 ENSTTRP00000004699/1-1010 RQKSEGGAYH DPHSDDGTVP KENRHLYNDP VPEXXXXXXX XPSPRPDNSF ENSBTAP00000009766/1-971 RQKSEGGAYH DPHSDDGAAP KENRHLYNDP VPRRVGSFYR VPSPRPDNSF ENSP00000369325/1-1030 RQKSEGGVYH DPHSDDGTAP KENRHLYNDP VPRRVGSFYR VPSPRPDNSF bmy_18144T0/1-875 RQKSEGGAYH DPHSDDGTVP KENRHLYNDP VPRRVGSFYR VPSPRPDNSF BACU004919/1-837 RQKSEGGAYH DPHSDDGTVP KENRHLYNDP VPRRVGSFYR VPSPRPDNSF 751 800 ENSTTRP00000004699/1-1010 HENNVSTRVS SLPSESSSGT NHSKRQPAFD P---WKSPEN ISHSEQLKEK ENSBTAP00000009766/1-971 HENNVSTRVS SLPSESSSGT NHSKRQPAFD PCNSGKSPEN ISHSEQLKEK ENSP00000369325/1-1030 HENNVSTRVS SLPSESSSGT NHSKRQPAFD P---WKSPEN ISHSEQLKEK bmy_18144T0/1-875 HENNVSTRVS SLPSESSSGT NHSKRQPAFD P---WKSPEN ISHSEQLKEK BACU004919/1-837 HENNVSTRVS SLPSESSSGT NHSKRQPAFD P---WKSPEN ISHSEQLKEK 801 850 ENSTTRP00000004699/1-1010 EKQGFFRSMK KKKKKSQTVP NSDGPDLLTL QKAIHSASTP SSRPKEWRPE ENSBTAP00000009766/1-971 EKQGFFRSMK KKKKKSQTVP NSDGPDLLTL QKAIHSASTP SSRPKEWRPE ENSP00000369325/1-1030 EKQGFFRSMK KKKKKSQTVP NSDSPDLLTL QKSIHSASTP SSRPKEWRPE bmy_18144T0/1-875 EKQGFFRSMK KKKKKSQTVP NSDGPDLLTL QKAIHSASTP SSRPKEWRPE BACU004919/1-837 EKQGFFRSMK KKKKKSQTVP NSDGPDLLTL QKAIHSASTP SSRPKEWRPE 851 900 ENSTTRP00000004699/1-1010 KISDLQT--- ---------- ---------- ---------- -QXXXXXXXX ENSBTAP00000009766/1-971 KISDLQTQFS PEGRERDHWD FAMPRERENR GDKKKRGRTK AQSQPLKSLR ENSP00000369325/1-1030 KISDLQT--- ---------- ---------- ---------- -QSQPLKSLR bmy_18144T0/1-875 KISDLQT--- ---------- ---------- ---------- -QSQPLKSLR BACU004919/1-837 KISDLQT--- ---------- ---------- ---------- -QG------- 901 950 ENSTTRP00000004699/1-1010 XXXXXXXXXX HRASSDPRFQ PLTTSQAKKF LSEIRIHPMS QASGGSSNIR ENSBTAP00000009766/1-971 KLLHLSSASN HPASSDPRFQ PLTTQQAKNS FSEIRIHPLS QASGGSSNIR ENSP00000369325/1-1030 KLLHLSSASN HPASSDPRFQ PLTAQQTKNS FSEIRIHPLS QASGGSSNIR bmy_18144T0/1-875 KLLHLSSASN HPASSDPRFQ PLTTQQAKNS FSEIRIHPLS QASGGSSNIR BACU004919/1-837 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000004699/1-1010 QEPTPKGRPA LQLPECGCDS GSSSHL-GPQ GGNFMRVREQ GGEQFHLG-- ENSBTAP00000009766/1-971 QEPTPKGRPA LQLP------ ---------- ---------- -------GQM ENSP00000369325/1-1030 QEPAPKGRPA LQLPDGGCDG RRQRHHSGPQ DRRFMLRTTE QQGEYFCCGD bmy_18144T0/1-875 QEPTPKGRPA LQLP------ ---------- ---------- -------GQM BACU004919/1-837 ---------- -LLP------ ---------- ---------- -------C-- 1001 1050 ENSTTRP00000004699/1-1010 DPKMLHTCVQ NAPSPKPPCP ---------- ----VLVSGI GASSYLTQKR ENSBTAP00000009766/1-971 DPGWHVSSVT RSATEGPSYS ---------- ---------- ---EQLGAKS ENSP00000369325/1-1030 PKKPHTPCVP NRALHRPISS PAPYPVLQVR GTSMCPTLQV RGTDAFSCPT bmy_18144T0/1-875 DPGWHVSSVT RSATEGPSYS ---------- ---------- ---EQLGAKS BACU004919/1-837 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000004699/1-1010 QCFGPPSVLS WTLVEALNLR IQQDQAAF-- -NEDEALTGK ENSBTAP00000009766/1-971 GPNGHPY--N RTNRSRMPNL NDLKETAL-- ---------- ENSP00000369325/1-1030 QQSGFSFFVR HVMREALIHR AQVNQAALLT YHENAALTGK bmy_18144T0/1-875 GPNGHPY--N RTNRSRMPNL NDLKETAL-- ---------- BACU004919/1-837 ---------- ---------- ---------- ----------