KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:16 2014 Check: 00 .. Name: ENSTTRP00000006292/1-1132 Len: 1167 Check: 6105 Weight: 1.00 Name: ENSP00000335371/1-1133 Len: 1167 Check: 3185 Weight: 1.00 Name: ENSBTAP00000009769/1-1133 Len: 1167 Check: 4967 Weight: 1.00 Name: BACU007174/1-1058 Len: 1167 Check: 3433 Weight: 1.00 Name: bmy_13037T0/1-1133 Len: 1167 Check: 3897 Weight: 1.00 // 1 50 ENSTTRP00000006292/1-1132 MSPTQWDFPV ELCCRPMAFV TLTGLDVVYN AVHRAVWDAF CANRRADRVP ENSP00000335371/1-1133 MSPTQWDFPV ELCCRPMAFV TLTGLDVVYN AVHRAVWDAF CANRRADRVP ENSBTAP00000009769/1-1133 MSPTQWDFPV ELCCRPMAFV TLTGLDVVYN AVHRAVWDAF CANRRADRVP BACU007174/1-1058 MSPTQWDFPV ELCCRPMAFV TLTGLDVVYN AVHRAVWDAF CANRRADRVP bmy_13037T0/1-1133 MSPTQWDFPV ELCCRPMAFV TLTGLDVVYN AVHRAVWDAF CANRRADRVP 51 100 ENSTTRP00000006292/1-1132 ISFKVLPGDH EYPKCRPKXX XXXXXIPKGI LKTGWMNKHL NLVPALVVVF ENSP00000335371/1-1133 ISFKVLPGDH EYPKCRPKRT SYEWYIPKGI LKTGWMNKHL NLVPALVVVF ENSBTAP00000009769/1-1133 ISFKVLPGDH EYPKCRPKRT SYEWYIPKGI LKTGWMNKHL NLVPALVVVF BACU007174/1-1058 ISFKVLPGDH EYPKCRPKRT SYEWYIPKGI LKTGWMNKHL NLVPALVVVF bmy_13037T0/1-1133 ISFKVLPGDH EYPKCRPKRT SYEWYIPKGI LKTGWMNKHL NLVPALVVVF 101 150 ENSTTRP00000006292/1-1132 YELDWDEPQW KEKQSECATR VEIVRQSLQG RNTKVAVVLI QKKTPLPPGE ENSP00000335371/1-1133 YELDWDEPQW KEKQSECATR VEIVRQSLQG RNTKVAVVLI QKKTPLPPGE ENSBTAP00000009769/1-1133 YELDWDEPQW KEKQSECATR VEIVRQSLQG RNTKVAVVLI QKKTPLPPGE BACU007174/1-1058 YELDWDEPQW KEKQSECATR VEIVRQSLQG RNTKVAVVLI QKKTPLPPGE bmy_13037T0/1-1133 YELDWDEPQW KEKQSECATR VEIVRQSLQG RNTKVAVVLI QKKTPLPPGE 151 200 ENSTTRP00000006292/1-1132 DVIASERAAA LCNACELSGK SLFVLPHTDH LVGYIIRLKN AFY-HAQTYY ENSP00000335371/1-1133 DVIASERAAA LCNACELSGK SLFVLPHTDH LVGYIIRLEN AFYEHAQTYY ENSBTAP00000009769/1-1133 DVIASERAAA LCNACELSGK SLFVLPHTDH LVGYIIRLEN AFYEHAQTYY BACU007174/1-1058 DVIASERAAA LCNACELSGK SLFVLPHTDH LVGYIIRLEN AFYEHAQTYY bmy_13037T0/1-1133 DVIASERAAA LCNACELSGK SLFVLPHTDH LVGYIIRLEN AFYEHAQTYY 201 250 ENSTTRP00000006292/1-1132 YPENRRVKSH KEFLNKTTHQ LLFVRHQFKI AFFSELKQDT QNALKNYRTA ENSP00000335371/1-1133 YTEIRRVKSH KEFLNKTTHQ LLFVRHQFKI AFFSELKQDT QNALKNYRTA ENSBTAP00000009769/1-1133 YTEIRRVKSH KEFLNKTTHQ LLFVRHQFKI AFFSELKQDT QNALKNYRTA BACU007174/1-1058 YTEIRRVKSH KEFLNKTTHQ LLFVRHQFKI AFFSELKQDT QNALKNYRTA bmy_13037T0/1-1133 YTEIRRVKSH KEFLNKTTHQ LLFVRHQFKI AFFSELKQDT QNALKNYRTA 251 300 ENSTTRP00000006292/1-1132 YNLVHELRAH ETNILEIKTM AGFINYKICR LCFQHNTPLD AIAQFRKHID ENSP00000335371/1-1133 YNLVHELRAH ETNILEIKTM AGFINYKICR LCFQHNTPLD AIAQFRKHID ENSBTAP00000009769/1-1133 YNLVHELRAH ETNILEIKTM AGFINYKICR LCFQHNTPLD AIAQFRKHID BACU007174/1-1058 YNLVHELRAH ETNILEIKTM AGFINYKICR LCFQHNTPLD AIAQFRKHID bmy_13037T0/1-1133 YNLVHELRAH ETNILEIKTM AGFINYKICR LCFQHNTPLD AIAQFRKHID 301 350 ENSTTRP00000006292/1-1132 LCKKKIGSAE LSFEHAAWMS KQFQAFGDLF DEAIKLGLTA IQTQNPGFYY ENSP00000335371/1-1133 LCKKKIGSAE LSFEHDAWMS KQFQAFGDLF DEAIKLGLTA IQTQNPGFYY ENSBTAP00000009769/1-1133 LCKKKIGSAE LAFEHAAWMS KQFQAFGDLF DEAIKLGLTA IQTQNPGFYY BACU007174/1-1058 LCKKKIGSAE LSFEHAAWMS KQFQAFGDLF DEAIKLGLTA IQTQNPGFYY bmy_13037T0/1-1133 LCKKKIGSAE LSFEHAAWMS KQFQAFGDLF DEAIKLGLTA IQTQNPGFYY 351 400 ENSTTRP00000006292/1-1132 QQAAYYAQER KQLTKTLCNH EASVAHPSPD PLETQTGVLD FYGQRPWRQG ENSP00000335371/1-1133 QQAAYYAQER KQLAKTLCNH EASVMYPNPD PLETQTGVLD FYGQRSWRQG ENSBTAP00000009769/1-1133 QQAAYYAQER KQLAKALCNH EASVTYPNPD PLETQAGVLD FYGQRSWRQG BACU007174/1-1058 QQAAYYAQER KQLTKTLCNH EASVTYPNPD PLETQTGLLD FYGQRSWRQG bmy_13037T0/1-1133 QQAAYYAQER KQLTKTLCNH EASITYPSPD PLETQTGLLD FYGQRSWRQG 401 450 ENSTTRP00000006292/1-1132 ILSFDLSDPE KEKVGILAIQ LKERSVVHSE IIITLLSNAV AQFKKYKCPR ENSP00000335371/1-1133 ILSFDLSDPE KEKVGILAIQ LKERNVVHSE IIITLLSNAV AQFKKYKCPR ENSBTAP00000009769/1-1133 VLSFDLSDPE KEKVGILAIQ LKERSVVHSE VIITLLSNAV AQFKKYKCPR BACU007174/1-1058 I--------- ---------- ---------- ---------- ---------- bmy_13037T0/1-1133 ILSFDLSDPE KEKVGILAIQ LKERSVVHSE IIITLLSNAV AQFKKYKCPR 451 500 ENSTTRP00000006292/1-1132 MKSHLMVQMG EEYYYAKDYT KALKLLDYVM CDYRSEGWWT LLTSILTTAL ENSP00000335371/1-1133 MKSHLMVQMG EEYYYAKDYT KALKLLDYVM CDYRSEGWWT LLTSVLTTAL ENSBTAP00000009769/1-1133 MKSHLMVQMG EEYYYAKDYT KALKLLDYVM CDYRSEGWWT LLTSILTTAL BACU007174/1-1058 ----LMVQMG EEYYYAKDYT KALKLLDYVM CDYRSEGWWT LLTSILTTAL bmy_13037T0/1-1133 MKSHLMVQMG EEYYYAKDYT KALKLLDYVM CDYRSEGWWT LLTSILTTAL 501 550 ENSTTRP00000006292/1-1132 KCSYLMAQLK DYITYSLELL GRASTLKDDQ KSRIEKNLIN VLMNESPAPE ENSP00000335371/1-1133 KCSYLMAQLK DYITYSLELL GRASTLKDDQ KSRIEKNLIN VLMNESPDPE ENSBTAP00000009769/1-1133 KCSYLMAQLK DYITYSLELL GRASTLKDDQ KSRIEKNLIN VLMNESPDPE BACU007174/1-1058 KCSYLMAQLK DYITYSLELL GRASTLKDDQ KSRIEKNLIN VLMNESPDPE bmy_13037T0/1-1133 KCSYLMAQLK DYITYSLELL GRGSTLKDDQ KSRIEKNLIN VLMNESPDPE 551 600 ENSTTRP00000006292/1-1132 PDCDILAVKT AQKLWADRIS LAGSNLFTIG VQDFVPFVQC KAKFHAPSFH ENSP00000335371/1-1133 PDCDILAVKT AQKLWADRIS LAGSNIFTIG VQDFVPFVQC KAKFHAPSFH ENSBTAP00000009769/1-1133 PDCDILAVKT AQKLWVDRIS LAGSNVFTIG VQDFVPFVQC KAKFHAPSFH BACU007174/1-1058 PDCDILAVKT AQKLWADRIS LAGSNLFTIG VQDFVPFVQC KAKFHAPSFH bmy_13037T0/1-1133 PDCDILAVKT AQKLWADRIS LAGNNLFTIG VQDFVPFVQC KAKFHAPSFH 601 650 ENSTTRP00000006292/1-1132 VDVPVQFDIY LKADCPHPIR FSKLCVSFNN QEYNQFCVIE EASKASDVLE ENSP00000335371/1-1133 VDVPVQFDIY LKADCPHPIR FSKLCVSFNN QEYNQFCVIE EASKANEVLE ENSBTAP00000009769/1-1133 VDVPVQFDVY LKADCPHRIR FSKLCISFNN QEYNQFCVIE EASKASDVLE BACU007174/1-1058 VDVPVQFDIY LKADCPHPIR FSKLCVSFNN QEYNQFCVIE DASKASDVLE bmy_13037T0/1-1133 VDVPVQFDIY LKADCPHPIR FSKLCVSFNN QEYNQFCVIE DASKASDVLE 651 700 ENSTTRP00000006292/1-1132 NLTQGKMCLV PGKTRKFLFK FVAKTEDVGK KIEITPLDLV LGSEAGRCVV ENSP00000335371/1-1133 NLTQGKMCLV PGKTRKLLFK FVAKTEDVGK KIEITSVDLA LGNETGRCVV ENSBTAP00000009769/1-1133 NLTQGKMCLV PGKTRKFLFK FVAKTEDVGK KIEITSVDLV LGSEAGRCVV BACU007174/1-1058 NLTQGKMCLV PGKTRKFLFK FVAKTEDVGK KIEITSLDLV LGNEAGRCVV bmy_13037T0/1-1133 NLTQGKMCLV PGKTRKFLFK FVAKTEDVGK KIEITSLDLV LGNEAGRCVV 701 750 ENSTTRP00000006292/1-1132 LNWQGGGGDA ASTQEALQAA RSFKRRPRLP DSELHWDSIV IQASTMIISR ENSP00000335371/1-1133 LNWQGGGGDA ASSQEALQAA RSFKRRPKLP DNEVHWDSII IQASTMIISR ENSBTAP00000009769/1-1133 LNWQGGGGDA ASTQEALQAS RSFKRRPRLP DSEVHWDGIV IQASTMIISR BACU007174/1-1058 LNWQGGGGDA ASTQEALQAS RSFKRRPRLP DSEAHWDSIV IQASTMIISR bmy_13037T0/1-1133 LNWQGGGGDA ASTQEALQAS RSFKRRPRLR DSEVHWDSIV IQASTMIISR 751 800 ENSTTRP00000006292/1-1132 VPNISVHLRH DPPALTNEMY CLVVTVQSHE KTCIRDVKLT AGLKPGQDAN ENSP00000335371/1-1133 VPNISVHLLH EPPALTNEMY CLVVTVQSHE KTQIRDVKLT AGLKPGQDAN ENSBTAP00000009769/1-1133 VPNISVHLRH DPPALTNEMY CLVVTVQSHE KSPIRDVKLT AGLKPGQDAN BACU007174/1-1058 VPNISVHLRH DPPALTNEMY CLVVTVQSHE KTPIRDVKLT AGLKPGQDAN bmy_13037T0/1-1133 VPNISVHLRH DPPALTNEMY CLVVTVQSHE KTPIRDVKLT AGLKPGQDAN 801 850 ENSTTRP00000006292/1-1132 LTQKTHVTLH GTEPCDESYP ALLTDIPVGD LHPGEQ---- ---------- ENSP00000335371/1-1133 LTQKTHVTLH GTELCDESYP ALLTDIPVGD LHPGEQ---- ---------- ENSBTAP00000009769/1-1133 LTQKTHVTLH GTELCDESYP ALLTDIPVGD LQPGEQ---- ---------- BACU007174/1-1058 LTQKTHVTLH GTELCDESYP ALLTDIPVGD LHPGEQVNLA TCDWRGNWFG bmy_13037T0/1-1133 LTQKTHVTLH GTELCDESYP ALLTDIPVGD LHPGEQ---- ---------- 851 900 ENSTTRP00000006292/1-1132 ------LEKM LYVRCGTVGS RMFLVYVSYL INTTIEEKEI VCKCHKDETV ENSP00000335371/1-1133 ------LEKM LYVRCGTVGS RMFLVYVSYL INTTVEEKEI VCKCHKDETV ENSBTAP00000009769/1-1133 ------LEKA VYVRCGTVGS RMFLVYVSYL INTAIEGKET VCKCHKDETV BACU007174/1-1058 CSVKYVLEEM LYVRCGTVGS RMFLVYVSYL INTTIEGKEI VCKCHKDETV bmy_13037T0/1-1133 ------LEKM LYVRCGTVGS RMFLVYVSYL INTTIEEKEI VCKCHKDETV 901 950 ENSTTRP00000006292/1-1132 TIETVFPFDV AVKFVSTKFE HLERVYADIP FLLMTDLLSA SPWALTIVSS ENSP00000335371/1-1133 TIETVFPFDV AVKFVSTKFE HLERVYADIP FLLMTDLLSA SPWALTIVSS ENSBTAP00000009769/1-1133 TIETVFPFDV AVKFVSTKFE HLERVYADIP FLLMTDLLSA SPWALTIVSS BACU007174/1-1058 TIETVFPFDV AVKFVSTK-- ---------- ---------- ---------- bmy_13037T0/1-1133 TIETVFPFDV AVKFVSTKFE HLERVYADIP FLLMTDLLSA SPWALTIVCS 951 1000 ENSTTRP00000006292/1-1132 ELQLAPSMTP VDQLESQVDN VVLRTAESAS ECFCLRCPSV GNVEGGVATG ENSP00000335371/1-1133 ELQLAPSMTT VDQLESQVDN VILQTGESAS ECFCLQCPSL GNIEGGVATG ENSBTAP00000009769/1-1133 ELQLAPSMTP VDQLESQVDR VVLQTGESAS ECFCLRCPSV GNVEGGVATG BACU007174/1-1058 ---------- ---------- ----TTESAS ECFCLRCPSV GNVEGGVATG bmy_13037T0/1-1133 ELQLAPCMTP VDQLESQVAG VVLQTTESAS ECFCLRCPSV GNVEGGVATG 1001 1050 ENSTTRP00000006292/1-1132 HYIISWKRTS AMDDIPVIST VITLPHVIVE NIPLXXXXXX XXXXXXXXXX ENSP00000335371/1-1133 HYIISWKRTS AMENIPIITT VITLPHVIVE NIPLHVNADL PSFGRVRESL ENSBTAP00000009769/1-1133 HYVISWKRTS ATDGVPVIST VITLPHVIVE NIPLHVNADL PSFGRVRESL BACU007174/1-1058 HYIISWKRTS ATDNIPVIRT VITLPHVIVE NIPLHVNADL PSFGRVRESL bmy_13037T0/1-1133 HYIISWKRTS AMDNIPVIST VITLPHVIVE NIPLHVNADL PSFGRVRESL 1051 1100 ENSTTRP00000006292/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXIRLRILP GTEQEMLYNF ENSP00000335371/1-1133 PVKYHLQNKT DLVQDVEISV EPSDAFMFSG LKQIRLRILP GTEQEMLYNF ENSBTAP00000009769/1-1133 PVRYHLQNKT DLVQDVEISV EPSDAFMFSG LKQIRLRILP GTEQEMLYNF BACU007174/1-1058 PVKYHLQNKT DLVQDVEISV EPSDAFMFSG LKQIRLRILP GTEQEMLYNF bmy_13037T0/1-1133 PVKYHLQNKT DLVQDVEISV EPSDAFMFSG LKQIRLRILP GTEQEMLYNF 1101 1150 ENSTTRP00000006292/1-1132 YPLMAGYQQL PSLNINLLRF PNFTNQLLRR FIPTRIFVK- --------PQ ENSP00000335371/1-1133 YPLMAGYQQL PSLNINLLRF PNFTNQLLRR FIPTSIFVK- --------PQ ENSBTAP00000009769/1-1133 YPLMAGYQQL PSLNINLLRF PNFTNQLLRR FIPTSIFVK- --------PQ BACU007174/1-1058 YPLMAGYQQL PSLNINLLRF PNFTNQLLRR FIPTSIFVKL FDPPKFALPK bmy_13037T0/1-1133 YPLMAGYQQL PSLNINLLRF PNFTNQLLRR FIPTSIFVK- --------PQ 1151 1200 ENSTTRP00000006292/1-1132 GRLMDDASIA AA----- ENSP00000335371/1-1133 GRLMDDTSIA AA----- ENSBTAP00000009769/1-1133 GRLVDDASIA AA----- BACU007174/1-1058 LRSMAFISVK VFIDVQT bmy_13037T0/1-1133 GRLMDDASIA AA-----