KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:20 2014 Check: 00 .. Name: ENSP00000474710/1-699 Len: 723 Check: 4574 Weight: 1.00 Name: ENSBTAP00000009775/1-698 Len: 723 Check: 411 Weight: 1.00 Name: ENSTTRP00000014194/1-716 Len: 723 Check: 7965 Weight: 1.00 Name: bmy_12664T0/1-685 Len: 723 Check: 3230 Weight: 1.00 Name: BACU012372/1-710 Len: 723 Check: 1076 Weight: 1.00 // 1 50 ENSP00000474710/1-699 MADAGIRRVV PSDLYPLVLG FLRDNQLSEV ANKFAKATGA TQQDANASSL ENSBTAP00000009775/1-698 MADAGLRRVV PSDLYPLVLG FLRDNQLSSV ANKFVKATGA TQQDANATSL ENSTTRP00000014194/1-716 MADAGLRRVV PSDLYPLVLG FLRDNQLSDV ANKFAKATGA TQQDANASSL bmy_12664T0/1-685 MADAGLRRVV PSDLYPLVLG FLRDNQLSDV ANKFAKATGA TQQDANASSL BACU012372/1-710 MADAGLRRVV PSDLYPLVLG FLRDNQLSDV ANKFAKATGA TQQDANASSL 51 100 ENSP00000474710/1-699 LDIYSFWLKS AKVPERKLQA NGPVAKKAKK KASSSDSEDS SEEEEEVQGP ENSBTAP00000009775/1-698 LDIYSFWLKS TKAPKRKLQA NGPVAKK--- -TSSSDSSDD SSEEEN-QGP ENSTTRP00000014194/1-716 LDIYSFWLKS TKAPKRKLQA NGPVTKKAKK KTSSSDSSED SSEEEKTQGP bmy_12664T0/1-685 LDIYSFWLKS TKAPKRKLQA NGPVTKKAKK KTSSSDSSED SSEEEKAQGP BACU012372/1-710 LDIYSFWLKS TKAPKRKLQA NGPVTKKAKK KTSSSDSSED SSEEEKAQGP 101 150 ENSP00000474710/1-699 PAKKAAVPAK RVGLP--PGK AAAKASE--S SSSEESSDDD DEEDQKKQPV ENSBTAP00000009775/1-698 PAKKAAVPAK QASLLQHPGK AAVKASESSS SSSSEESSDE EERDKKKKPV ENSTTRP00000014194/1-716 PAKKAAVPAK RASLLQHPGK AAVKASE--S SSSSEESSDD EEEDKKKKPV bmy_12664T0/1-685 PAKKAAVPAK RASLLQHPGK AAVKASE--S SSSSEESSDD EEEDKKKKPV BACU012372/1-710 PAKKAAVPAK RASLLQHPGK AAVKASE--S SSSSEESSDD EEEDKKKKPV 151 200 ENSP00000474710/1-699 QKGVKPQAKA AKAPPKKAKS SDSDSDSSSE DEPPKNQKPK ITPVTVKAQT ENSBTAP00000009775/1-698 EKGVKPQAKT VKAPPKKAES SDSDSDSSSE DEPPKNQKPK TTPVAVKTQA ENSTTRP00000014194/1-716 QKGVKPQAKT VKAPPKKAKS SDSDSDSSSE DEVPKNQKPK TTPVAAKAQA bmy_12664T0/1-685 QKGVKPQAKT VKAPPKKAKS SDSDSDSSSE DEVPKNQKPK TTPVAAKAQA BACU012372/1-710 QKGVKPQAKT VKAPPKKAKS SDSDSDSSSE DEVPKNQKPK TTPVAAKAQA 201 250 ENSP00000474710/1-699 KAPPK---PA RAAPKIANGK AA--SSSSSS SSSSSSDDSE EEKAAATPKK ENSBTAP00000009775/1-698 KAQAKPGTSA RPAPKVANGK AA-----SSS SSSSSDDDSE EEKAVAISKK ENSTTRP00000014194/1-716 KALAK---PA RPAPKVVNGK AAGSNSSSSS SSSSSDDDSE EGKAAAVSKK bmy_12664T0/1-685 KAPAKPGTPA RPAPKVVNGK AAGSNSSSSS SSSSSDDDSE EEKAAAVSKK BACU012372/1-710 KAPAKPGTPA RPAAKVVNGK AAGSNSSSSS SSSSSDDDSE EEKAAAVSKK 251 300 ENSP00000474710/1-699 ---------- TVPKKQVVAK APVKAATTPT RKSSSSEDSS SDEEEE---Q ENSBTAP00000009775/1-698 ---------- TIPKKQVVAK APVKMAAAPA QKSSSSEDSS SEEEEE-EQK ENSTTRP00000014194/1-716 VWTLISSRKE TVPKKQAVAK APVKAAATPA QKSSSSEDSS SEEEEEEEQK bmy_12664T0/1-685 ---------- TVPKKQVVAK APVKAAAAPA QKSSSSEDSS SEEEEEEEQK BACU012372/1-710 ---------- TVPKKQVVAK APVKAAAAPA QKSSSSEDSS SEEEEEKEQK 301 350 ENSP00000474710/1-699 KKPMKNKPGP YSSVPPPSAP PPKKSLGTQP PKKAVEKQQP VESSEDSSDE ENSBTAP00000009775/1-698 KKPMKKKPGP YSSVPPPSVP PPKKSLGTQS PKKAAEKQQT VESSEESSDE ENSTTRP00000014194/1-716 KKPMKKKPGP YSSVPPPSVP PPKKSLGIQA PKKAAEKQQP VESSEDSSDE bmy_12664T0/1-685 KKPMKKKP-- ---------- ---------- ---AAKKQQP VESSEDSSDE BACU012372/1-710 KKPMKKKPGP YSSVPPPSVP PPKKSLGIQA PKKAAEKQQP VESSEDSSDE 351 400 ENSP00000474710/1-699 SDSSSEEEKK PPTKAVVSKA TTKPPPAKKA AESSSDSSDS DSSEDDEAPS ENSBTAP00000009775/1-698 SDSSSEEEKK PPAKAVIAKA ATKAAPAKKA AESSSDSSDS DSSE-DEAPA ENSTTRP00000014194/1-716 SDSSSEEKKR PPAKAVISKA TTKPAPAKKA AESSSDSSDS DSS--DEAPA bmy_12664T0/1-685 SDSSAEEEKR PPAKAVISKA TTKPAPAKKA AESSSDSSDS DSSE-DEAPA BACU012372/1-710 SDSSAEEEKR PPAKAVISKA TTKPAPAKKA AESSSDSSDS DSSE-DEAPA 401 450 ENSP00000474710/1-699 KPAGTTKNSS NKPAVTTKSP AVKPAAAPKQ PVGGGQKLLT RKADSSSSEE ENSBTAP00000009775/1-698 KPAGTTKNPS SKPAATPKQP AAKLAATPKQ AAGSVQKPLT RKADSSSSEE ENSTTRP00000014194/1-716 KPASTTKNSS GKPAATPKQS AVKPATTPKQ PAATGQKPLT RKADSSSSEE bmy_12664T0/1-685 KPASTTKNSS GKPAATPKQS AVKPATTPKQ PAASGQKPLT RKADSTSSEE BACU012372/1-710 KPASTTKNSS GKPAATPKQS AVKPATTPKQ PAASGQKPLT RKADSTSSEE 451 500 ENSP00000474710/1-699 ESSSSEEEKT KKMVATTKPK ATAKAALSLP AKQAPQGSRD SSSDSDSSSS ENSBTAP00000009775/1-698 ESSSSDEEET KKTVATPKSK ATVKAALSLP AKQSSQGAGG SSSDSDSSSS ENSTTRP00000014194/1-716 ESSASEEEKT KKTVATPESK VMAKAAPSLP ARQASQGGGD SSSDSDSSSS bmy_12664T0/1-685 ESSSSEEEKT KKNVATPKFK VMAKAAPSLP AKQASQGGGD SSSDSDSSSS BACU012372/1-710 ESSSSEEEKT KKNVAIPKSK VMAKAAPSLP AKQASQGGGD SSSDSDSSSS 501 550 ENSP00000474710/1-699 EE-EEEKTSK SAVKKKPQKV AGGAAPSKPA SAKKGKAESS NSSSSDDSSE ENSBTAP00000009775/1-698 EEEEEEKTPK PPA-KKPRKE VGAIAPSKPA SGKKAKAESS SSCSSDDSSE ENSTTRP00000014194/1-716 EEDEDEKTPK PPAKKKPQKA GGTVAPSKPA SVKKAKAESS STSSSEDSSE bmy_12664T0/1-685 EEDEEEKTPK PPAKKKPQKA GGTVAPSKPA SVKKAKAESS STSSSEDSSE BACU012372/1-710 EEDEEEKTPK PPAKKKPQKA GGTVAPSKPA SVKKAKAESS STSSSEDSSE 551 600 ENSP00000474710/1-699 EEEE-KLKGK GSPRPQAPKA NGTSALTAQN GKAAKNSEEE EEEKKKAAVV ENSBTAP00000009775/1-698 EEEE--PKGK GTPRPQATKA NGTSALTAQN GKADRGSNEE EEEKKKAAVA ENSTTRP00000014194/1-716 QEEEEKPKAK GTPRPQTAKA NGTSALTAQN GKADKDSNEE ERGKKKAAVA bmy_12664T0/1-685 EEEEEKPKGK GTPRPQTPKA NGTSALTAQN GKADKDSNEE EEGKKKAAVA BACU012372/1-710 EEEEEKPKGK GTPRPQTPKA NGTSALTAQN GKADKDSNEE EEGKKKAVVA 601 650 ENSP00000474710/1-699 VSKSGSLKKR KQNEAAKEAE TPQAKKIKLQ TPNTFPKRKK GEKRASSPFR ENSBTAP00000009775/1-698 VAKPGSEKKK KKNEAAKEAE TPPAKKIKPQ TPNTFPKRKK GERRASSPFR ENSTTRP00000014194/1-716 VAKPGSGKKR KQNEAAKEAE TPLAKKIKPQ TPNTFPKRKK GERRGSSPFR bmy_12664T0/1-685 VAKPGSGKKW KQNEAAKEAE TPPAKKIKPQ TPNTFPKRKK GERRGSSPFR BACU012372/1-710 VAKPGSGKKW KQNEAAKEAE TPPAKKIKPQ TPNTFPKRKK GERRGSSPFR 651 700 ENSP00000474710/1-699 RVREEEIEVD SRVADNSFDA KRGAAGDWGE RANQVLKFTK GKSFRHEKTK ENSBTAP00000009775/1-698 RIREEEIEVD ARVADNSFDA KRGAAGDWGE RANQVLKFTK GKSFRHEKTK ENSTTRP00000014194/1-716 RIREEEIEVD ARVADNSFDA KRGATGDWGE RANQVLKFTK GKSFRHEKTK bmy_12664T0/1-685 RIREEEIKVD ARVADNSFDA KRGATGDWGE RANQVLKFTK GKSFRHEKTK BACU012372/1-710 RIREEEIKVD ARVADNSFDA KRGATGDWGE RANQVLKFTK GKSFRHEKTK 701 750 ENSP00000474710/1-699 KKRGSYRGGS ISVQVNSIKF DSE ENSBTAP00000009775/1-698 KKRGSYRGGS ISVQVNSVKF DSE ENSTTRP00000014194/1-716 KKRGSYRGGS ISVQVNSVKF DSE bmy_12664T0/1-685 KKRGSYRGGS ISVQVNSVKF DSE BACU012372/1-710 KKRGSYRGGS ISVQVNSVKF DSE