KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:24 2014 Check: 00 .. Name: ENSTTRP00000008983/1-1005 Len: 1066 Check: 5534 Weight: 1.00 Name: ENSP00000358071/1-1000 Len: 1066 Check: 3949 Weight: 1.00 Name: ENSBTAP00000009785/1-1004 Len: 1066 Check: 9696 Weight: 1.00 Name: bmy_02825T0/1-1046 Len: 1066 Check: 6106 Weight: 1.00 Name: BACU004709/1-1004 Len: 1066 Check: 2567 Weight: 1.00 // 1 50 ENSTTRP00000008983/1-1005 MAERKPNGGG GAASTSSSGT NLLFSSSATE FSFNVPFIPV TQAAAASASL ENSP00000358071/1-1000 MAERKPNGGS GGASTSSSGT NLLFSSSATE FSFNVPFIPV TQASASPASL ENSBTAP00000009785/1-1004 MAERKPNGGG GAVSASSSGT NLLFSSSATE FSFNVPFIPV TQAAAASASL bmy_02825T0/1-1046 MAERKPNGGG GAASTSSSGT NLLFSSSATE FSFNVPFIPV TQAAAASASL BACU004709/1-1004 MAERKPNGGG GAASTSSSGT NLLFSSSATE FSFNVPFIPV TQAAAASASL 51 100 ENSTTRP00000008983/1-1005 LLP------- --------GX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000358071/1-1000 LLP------- --------GE DSTDVGEEDS FLGQTSIHTS APQTFSYFSQ ENSBTAP00000009785/1-1004 LLP------- --------GE DSTDVGEEDS FLGQTSAHTS TPQTFSYFSQ bmy_02825T0/1-1046 LLPGGSKEMR IRWGKCVRGE DSTDVGEEDS FLGQTSAHTS TPQTFNYFSQ BACU004709/1-1004 LLP------- --------GE DSTDVGEEDS FLGQTSAHTS TPQTFSYFSQ 101 150 ENSTTRP00000008983/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000358071/1-1000 VSSSSDPFGN IGQSPLTTAA TSVGQSGFPK PLTALPFTTG SQDVSNAFSP ENSBTAP00000009785/1-1004 VSSSSDPFGN IGQSLLTTAA ASAGQSAYSK PPTSLPFTTG SQDVSNAFSS bmy_02825T0/1-1046 VSSSSDPFGN IGQSPLTTAA TSAGQSAFSK PPAALPFTTG SQDMSNAFSP BACU004709/1-1004 VSSSSDPFGN IGQSPLTTAA TSAGQSAFSK PPAALPFTTG SQDMSNAFSP 151 200 ENSTTRP00000008983/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000358071/1-1000 SISKAQPGAP PSSLMGINSY LPSQPSSLPP SYFGNQPQGI PQPGYNPYRH ENSBTAP00000009785/1-1004 SISKAQYGAP PASQIGINPY PPSQPSNLPP SNFGSPPQGT PQQGYNPYRH bmy_02825T0/1-1046 SISKAQYGAP AASQMGINTY LPSQPSSLPP SNFGSPPQGT PQQGYNPYRH BACU004709/1-1004 SISKAQYGAP AASQMGINTY LPSQPSSLPP SNFGSPPQGT PQQGYNPYRH 201 250 ENSTTRP00000008983/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXIPP ENSP00000358071/1-1000 TPGSSRANPY IAPPQLQQCQ TPGPPAHPPP SGPPVQMYQM PPGSLPPVPS ENSBTAP00000009785/1-1004 TAVSSRANPY IAPPQLQQCQ TPAHPSHPPP SAPPVQMYQV PPGSLPPIPP bmy_02825T0/1-1046 TAVSSRANPY IAPPQLQQCQ TPAHPTHPPP SGPPVQMYQM PPGSLPSIPP BACU004709/1-1004 TAVSSRANPY IAPPQLQQCQ TPAHPTHPPP SGPPVQMYQM PPGSLPSIPP 251 300 ENSTTRP00000008983/1-1005 SVQPGLSPPT QQQAPARPAG PSVQASSLFL LQNQYEPVQP HWFYCKEIEY ENSP00000358071/1-1000 SVQS----PA QQQVPARPGA PSVQVPSPFL LQNQYEPVQP HWFYCKEVEY ENSBTAP00000009785/1-1004 PAQAGLPPPI QQQAPARPAG PPLQAPPPFL LQNQYEPVQP HWFYCKEIEY bmy_02825T0/1-1046 SVQPGLSPPT QQQAPARPAG PSVQASSPFL LQNQYEPVQP HWFYCKEXEY BACU004709/1-1004 SVQPGLSPPT QQQAPARPAG PSVQASSPFL LQNQYEPVQP HWFYCKEIEY 301 350 ENSTTRP00000008983/1-1005 RQLWMPFSVF DSLNLEEIYN SVQPDPESVV LGTDGGRYDV YLYDRMRKAV ENSP00000358071/1-1000 KQLWMPFSVF DSLNLEEIYN SVQPDPESVV LGTDGGRYDV YLYDRIRKAA ENSBTAP00000009785/1-1004 KQLWMPFSVF DSLNLEEIYN SVQPDPESVV LGTDGGRYDV YLYDRMRKAV bmy_02825T0/1-1046 RQLWMPFSVF DSLNLEEIYN SVQPDPESVV LGTDGGRYDV YLYDRMRKAV BACU004709/1-1004 RQLWMPFSVF DSLNLEEIYN SVQPDPESVV LGTDGGRYDV YLYDRMRKAV 351 400 ENSTTRP00000008983/1-1005 YWEEEPAEVR RCTWFYKGDT DSRFIPYTEE FSEKLEAEYK KAVTTNQWHR ENSP00000358071/1-1000 YWEEEPAEVR RCTWFYKGDT DSRFIPYTEE FSEKLEAEYK KAVTTNQWHR ENSBTAP00000009785/1-1004 YWEEEPAEVR RCTWFYKGDT DSRFIPYTEE FSEKLEAEYK KAVTTNQWHR bmy_02825T0/1-1046 YWEEEPAEVR RCAWFYKGDT DSRFIPYTEE FSEKLEAEYK KAVTTNQWHR BACU004709/1-1004 YWEEEPAEVR RCAWFYKGDT DSRFIPYTEE FSEKLEAEYK KAVTTNQWHR 401 450 ENSTTRP00000008983/1-1005 RLEFPSGETI VMHNPKVIVQ FQPSSVPDEW GTTQDGQTRP RVVKRGVDDN ENSP00000358071/1-1000 RLEFPSGETI VMHNPKVIVQ FQPSSVPDEW GTTQDGQTRP RVVKRGIDDN ENSBTAP00000009785/1-1004 RLEFPSGETI VMHNPKVIVQ FQPSSVPDEW GTTQDGQTRP RVVKRGIDDN bmy_02825T0/1-1046 RLEFPSGETI VMHNPKVIVQ FQPSSVPDEW GTTQDGQTRP RVVKRGVDDN BACU004709/1-1004 RLEFPSGETI VMHNPKVIVQ FQPSSVPDEW GTTQDGQTRP RVVKRGVDDN 451 500 ENSTTRP00000008983/1-1005 LDEIPDGEMP PVDHLVFMVH GIGPVCDLRF RSIIECVDDF RVVSLKLLQT ENSP00000358071/1-1000 LDEIPDGEMP QVDHLVFVVH GIGPVCDLRF RSIIECVDDF RVVSLKLLRT ENSBTAP00000009785/1-1004 LDEIPDGEMP QVDHLVFMVH GIGPVCDLRF RSIIECVDDF RVVSLKLLQT bmy_02825T0/1-1046 LDEIPDGEMP QVDHLVFIVH GIGPVCDLRF RSIIECVDDF RVVSLKLLQT BACU004709/1-1004 LDEIPDGEMP QVDHLVFIVH GIGPVCDLRF RSIIECVDDF RVVSLKLLQT 501 550 ENSTTRP00000008983/1-1005 HFKKSLDDRK VSRVEFLPVH WHSSLGGDAT GVDRNIKKIT LPSIGRFRHF ENSP00000358071/1-1000 HFKKSLDDGK VSRVEFLPVH WHSSLGGDAT GVDRNIKKIT LPSIGRFRHF ENSBTAP00000009785/1-1004 HFKKSLDDRK VSRVEFLPVH WHSSLGGDAT GVDRNIKKIT LPSIGRFRHF bmy_02825T0/1-1046 HFKKSLDDRK VSRVEFLPVH WHSSLGGDAT GVDRNIKKIT LPSIGRFRHF BACU004709/1-1004 HFKKSLDDRK VSRVEFLPVH WHSSLGGDAT GVDRNIKKIT LPSIGRFRHF 551 600 ENSTTRP00000008983/1-1005 TNETLLDILF YNSPIYCQRI VEKVGLEINR LYALFMSRNP DFKGGVSVAG ENSP00000358071/1-1000 TNETLLDILF YNSPTYCQTI VEKVGMEINH LHALFMSRNP DFKGGVSVAG ENSBTAP00000009785/1-1004 TNETLLDILF YNSPTYCQMI VEKVGLEINR LYALFMSRNP DFKGGVSVAG bmy_02825T0/1-1046 TNETLLDILF YNSPIYCQRI VEKVGLEMNR LYALFMS--- ---------- BACU004709/1-1004 TNETLLDILF YNSPIYCQRI VEKVGLEMNR LYALFMSRNP DFKGGVSVAG 601 650 ENSTTRP00000008983/1-1005 HSLGSLILFD ILSNQKDLNL SKSPEPLAVA NGVVKQPHFQ EKQIPEEPKL ENSP00000358071/1-1000 HSLGSLILFD ILSNQKDLNL SKCPGPLAVA NGVVKQLHFQ EKQMPEEPKL ENSBTAP00000009785/1-1004 HSLGSLILFD ILSNQKDLSL SKSPVPFAVA NGVVKQPHFQ EKQIPEEPKL bmy_02825T0/1-1046 ----SLILFD ILSNQKDLNL SKSPGPLAVA NGVVKQPHFQ EKQIPEEPKL BACU004709/1-1004 HSLGSLILFD ILSNQKDLNS SKSPGPLAVA NGVVKQPHVQ EKQIPEEPKL 651 700 ENSTTRP00000008983/1-1005 TLDESCDLDV ENEEVLTLQE TLEALSLSEY VSTFEKEKID MESLLMCTVD ENSP00000358071/1-1000 TLDESYDLVV ENKEVLTLQE TLEALSLSEY FSTFEKEKID MESLLMCTVD ENSBTAP00000009785/1-1004 TLDESCDLDV ENEEVLTLQE TLEALSLSEY VSTFEKEKID MESLLMCTVD bmy_02825T0/1-1046 TLDESCDLDV ESEEVLTLQE TLEALSLSEY VSTFEKEKID MESLLMCTVD BACU004709/1-1004 TLDESCDLDV ENEEVLTLQE TLEALSLSEY VSTFEKEKID MESLLMCTVD 701 750 ENSTTRP00000008983/1-1005 DLKEMGIPLG PRKKIANFVK HKAAKLEQKK ASEKKAVMAA STKGQEESAQ ENSP00000358071/1-1000 DLKEMGIPLG PRKKIANFVE HKAAKL-KKA ASEKKAVAAT STKGQEQSAQ ENSBTAP00000009785/1-1004 DLKEMGIPLG PRKKIANFVK HKAVKL-KKA ASEKKAAVAT SAKGQEESAQ bmy_02825T0/1-1046 DLKEMGIPLG PRKKIANFVK HKAVKLEQKK ASEKKAVXAA STKGQEESAQ BACU004709/1-1004 DLKEMGIPLG PRKKIANFVK HKAVKLEQKK ASEKKAVMAA STKGQEESAQ 751 800 ENSTTRP00000008983/1-1005 KAKEMASPPS ESNESKRKLP LGVCVSSVHV DYESFEVGTG QVSVVYNSLD ENSP00000358071/1-1000 KTKDMASLPS ESNEPKRKLP VGACVSSVCV NYESFEVGAG QVSVAYNSLD ENSBTAP00000009785/1-1004 KAKDMASPPS DSNESKRRLP LGASVSSVRV DYEAFEVGTG QVSVVYSSLD bmy_02825T0/1-1046 KAKEMASSPS ES-ESKRKLP LGVYVSSVHV DYESFEVGTG QVSVVYNSLD BACU004709/1-1004 KAKEMASSPS ES-ESKRKLP LGVYVSSVHV DYESFEVGTG QVSVTYNSLD 801 850 ENSTTRP00000008983/1-1005 FEPEIFFALG SPIGMFLTIR GVDSIDENYR LPTCKGFFNI YHPLDPVAYR ENSP00000358071/1-1000 FEPEIFFALG SPIAMFLTIR GVDRIDENYS LPTCKGFFNI YHPLDPVAYR ENSBTAP00000009785/1-1004 FEPEIFFALG SPIGMFLTIR GVDRIDENYR LPTCKGFFNI YHPLDPVAYR bmy_02825T0/1-1046 FEPEIFFALG SPIGMFLTIR GVDRIDENYR LPTCKGFFNI YHPLDPVAYR BACU004709/1-1004 FEPEIFFALG SPIGMFLTIR GVDRIDENYR LPTCKGFFNI YHPLDPVAYR 851 900 ENSTTRP00000008983/1-1005 LEPMIVPDLD LKAVLIPHHK GRKRLHLELK ESLSRMGSDL KQGFISSLKS ENSP00000358071/1-1000 LEPMIVPDLD LKAVLIPHHK GRKRLHLELK ESLSRMGSDL KQGFISSLKS ENSBTAP00000009785/1-1004 LEPMIIPDLD LKAVLIPHHK GRKRLHLELK ESLSRMGSDL KQGFISSLKS bmy_02825T0/1-1046 LEPMIVPDLD LKAVLIPHHK GRKRLHLELK ESLSRMGSDL KQGFISSLKS BACU004709/1-1004 LEPMIVPDLD LKAVLIPHHK GRKRLHLELK ESLSRMGSDL KQGFISSLKS 901 950 ENSTTRP00000008983/1-1005 AWQTLNEFAR AHTSSTQLQE ELEKVANQIK EEEEKQVVEX XXXXXXXXXX ENSP00000358071/1-1000 AWQTLNEFAR AHTSSTQLQE ELEKVANQIK EEEEKQVVEA EKVVESPDFS ENSBTAP00000009785/1-1004 AWQTLNEFAR AHTSSTQLQE ELEKVANQIK EEEEKQVVEA EKIVESPDFS bmy_02825T0/1-1046 AWQTLNEFAR AHTSSTQLQE ELEKVANQIK EEEEKQVVEA EKTVESPDFS BACU004709/1-1004 AWQTLNEFAR AHTSSTQLQE ELEKVANQIK EEEEKQVVEA EKTVESPDFS 951 1000 ENSTTRP00000008983/1-1005 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXESEDTA ENSP00000358071/1-1000 KDEDYLGKVG MLNGGRRIDY VLQEKPIESF NEYLFALQSH LCYWESEDTA ENSBTAP00000009785/1-1004 KDEDYLGKVG MLNGGRRIDY VLQEKPIESF NEYLFALQSH LCYWESEDTA bmy_02825T0/1-1046 KDEDYLGKVG MLNGGRRIDY VLQEKPIESF NEYLFALQSH LCYW--NDSA BACU004709/1-1004 KDEDYLGKVG MLNGGRRIDY VLQEKPIESF NEYLFALQSH LCYWESEDTA 1001 1050 ENSTTRP00000008983/1-1005 LLL------- --------LK EI-------- --YRTMSISP EQPQH----- ENSP00000358071/1-1000 LLL------- --------LK EI-------- --YRTMNISP EQPQH----- ENSBTAP00000009785/1-1004 LLL------- --------LK EI-------- --YRTMNISP EQPQH----- bmy_02825T0/1-1046 LLCYYYKFVK LTEDSFSSFK DILVFTESCS INYIAEKILR GHPQSAPVMD BACU004709/1-1004 LLL------- --------LK EI-------- --YRTMSISP EQPQH----- 1051 1100 ENSTTRP00000008983/1-1005 ---------- ------ ENSP00000358071/1-1000 ---------- ------ ENSBTAP00000009785/1-1004 ---------- ------ bmy_02825T0/1-1046 DRNVIHRQLL CCNSEM BACU004709/1-1004 ---------- ------