KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:26 2014 Check: 00 .. Name: ENSP00000358824/1-302 Len: 308 Check: 9132 Weight: 1.00 Name: ENSBTAP00000009806/1-282 Len: 308 Check: 1521 Weight: 1.00 Name: ENSTTRP00000010817/1-298 Len: 308 Check: 5355 Weight: 1.00 Name: bmy_21789T0/1-270 Len: 308 Check: 8826 Weight: 1.00 Name: BACU011437/1-292 Len: 308 Check: 8569 Weight: 1.00 // 1 50 ENSP00000358824/1-302 MHYPTALLFL ILANGAQAFR ICAFNAQRLT LAKVAREQVM DTLVRILARC ENSBTAP00000009806/1-282 ---------- ---------- ----XAQRLT LAKVAREPVL DTLVKILARC ENSTTRP00000010817/1-298 ----MHCLLL LLAGGADTFH ICAFNTQRLT LSKVAREPVL DTLVQILARC bmy_21789T0/1-270 ---------- ---------- ---------- ------MTTL LARVQILARC BACU011437/1-292 ---------- ------MSSY STSLLWTRLT LNKVAKEPVL DTLVRILARC 51 100 ENSP00000358824/1-302 DIMVLQEVVD SSGSAIPLLL RELNRFDGSG PYSTLSSPQL GRSTYMETYV ENSBTAP00000009806/1-282 DIMVLQEVVD SSDTAIPLLL RELNRFGDSG PYASHSSLLL GRSTYKEKYV ENSTTRP00000010817/1-298 DITVLQEVVD STGSAIPLLL RELNRFDDSG PYRFLSSHLL GRGTYKEKYV bmy_21789T0/1-270 DITVLQEVVD STGSAIPLLL RELNRFDDSG PYSFLSSLLL GRGTYKEKYV BACU011437/1-292 DITVLQEVVD STGSAIPLLL RELNRFDDSG PYSFLSSLLL GRGTYKEKYV 101 150 ENSP00000358824/1-302 YFYRSHKTQV LSSYVYNDED DVFAREPFVA QFSLPSNVLP SLVLVPLHTT ENSBTAP00000009806/1-282 YLYRSHEAEV RDSYMYDDQD DLFTREPFVC WFSLRSKVLP SLVLVPLHTT ENSTTRP00000010817/1-298 YIYRSHRAQV LDSYVYDDQN DLFAREPFVC RFSLPSKVLP SLVLVPLHTT bmy_21789T0/1-270 YIYRSHKTQV LDSYVYDDQD DLFAREPFVC RFSLPSKVLP SLVLVPLHTT BACU011437/1-292 YIYRSHKTQV LDSYVYDDQD DLFAREPFVC RFSLPSKVLP SLVLVPLHTT 151 200 ENSP00000358824/1-302 PKAVEKELNA LYDVFLEVSQ HWQSKDVILL GDFNADCASL TKKRLDKLEL ENSBTAP00000009806/1-282 PKAVETELNA LYDVFLDASG RWQTKDVILL GDFNADCTSL TKKRLDDLVL ENSTTRP00000010817/1-298 PKAVETELNA LYHVFLDASQ RWQSEDVILL GDFNADCASL TKKRLDDLVL bmy_21789T0/1-270 PKAVETELNA LYHVFLDASQ RWQSEDVILL GDFNADCASL TKKHLDGLVL BACU011437/1-292 PKAVETELNA LYHVFLDASQ RWQSEDVILL GDFNADCASL TKKHLDGLVL 201 250 ENSP00000358824/1-302 RTEPGFHWVI ADGEDTTVRA STHCTYDRVV LHGERCRSLL HTAAAFDFPT ENSBTAP00000009806/1-282 RTQAGFHWAI ADGVDTTVRA STHCTYDRIV LHGEHLQSLL RGAAAFDFPQ ENSTTRP00000010817/1-298 RTQAGFHWAI PDGVDTTVRA STHCTYDRIV LHGEHLQSML RGAAAFDFPQ bmy_21789T0/1-270 RTQAGFHWAV ADGVDTTVRA STHCTYDRIV LHGERLQSLL RGTAAFDFPR BACU011437/1-292 RTQAAFHWAI TDGVDTTVRA STRCTYDRIV LHGEHLQSLL HGTAAFDFPR 251 300 ENSP00000358824/1-302 SFQLTEEEAL NISDHYPVEV ELKL-SQAHS VQPLSL---- -TVLLLLSLL ENSBTAP00000009806/1-282 SFGLTEQEAL NISDHYPVEV DLALSWAVHG VQPPCLATLW LSLLL--PLL ENSTTRP00000010817/1-298 SLGLTEEEAL NISDHYPVEV EL---LRVHG AQTLSLAALL PSLLL---LL bmy_21789T0/1-270 SFGLSEEEAL NVSDHFPVEV ELS--CAVRG VQPVSLATPV LSLLLLLPLL BACU011437/1-292 SFGLTEEEAL NVSDHFPVEV EVELSCAVRG VQPVSLATPV RSLLLLLPLL 301 350 ENSP00000358824/1-302 SPQLCPAA ENSBTAP00000009806/1-282 APQLGLVA ENSTTRP00000010817/1-298 SPQLGLVA bmy_21789T0/1-270 SPQLGLVA BACU011437/1-292 SPQLGLVA