KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:39:26 2014  Check: 00 ..

 Name: bmy_21788T0/1-289         Len:    306  Check:  2808  Weight:  1.00
 Name: ENSP00000299328/1-292     Len:    306  Check:  233  Weight:  1.00
 Name: ENSBTAP00000009807/1-261  Len:    306  Check:  7517  Weight:  1.00
 Name: BACU019821/1-257          Len:    306  Check:  6087  Weight:  1.00
 Name: ENSTTRP00000010820/1-289  Len:    306  Check:  93  Weight:  1.00

//


                          1                                                   50
bmy_21788T0/1-289         MPLHVKWPFP AVPPLTWTLA SSVVMGLVGT YSCFWTKCMN HLTVHNKEVL 
ENSP00000299328/1-292     MPLHVKWPFP AVPPLTWTLA SSVVMGLVGT YSCFWTKYMN HLTVHNREVL 
ENSBTAP00000009807/1-261  MPLHVKWPFP AVPPLTWTLA SSVVMGLVGT YSCFWTKCMN HLTVHNKEVL 
BACU019821/1-257          ---------- ---------- ---------- --------MN HLTVHNKEVL 
ENSTTRP00000010820/1-289  MPLHVKWPFP AVPPLTWTLA SSVVMGLVGT YSCFWTKYMN HLTVHNKEVL 


                          51                                                 100
bmy_21788T0/1-289         YELIENRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPAAA 
ENSP00000299328/1-292     YELIEKRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPAAA 
ENSBTAP00000009807/1-261  YELIENRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPTAA 
BACU019821/1-257          YELIENRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPAAA 
ENSTTRP00000010820/1-289  YELIENRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPAAA 


                          101                                                150
bmy_21788T0/1-289         DICFTKELHS HFFSLGKCVP VCRALSDTVF RQMFSR---- --------AR 
ENSP00000299328/1-292     DICFTKELHS HFFSLGKCVP VCR--GAEFF QAENEGKGVL DTGRHMPGAG 
ENSBTAP00000009807/1-261  DICFTKELHS HFFSLGKCVP VCR------- ---------- ---------- 
BACU019821/1-257          DICFTKELHS HFFSLGKCVP VCR--G--FF QGEYERKGIL DT--HVADTG 
ENSTTRP00000010820/1-289  DICFTKELHS HFFSLGKCVP VCREAG--FF QGEYERKGIL DT-KHVADTG 


                          151                                                200
bmy_21788T0/1-289         EAWLRESDAW SPNVTSILSF CRCGMSVSQG CGPGRGASLS GVGGWVSSGW 
ENSP00000299328/1-292     KRREKGDGVY QKGMDFILEK LNHGDWVH-- IFPEGKVNMS --SEFLRFKW 
ENSBTAP00000009807/1-261  -----GDGVY QKGMDFILEK LNHGDWVH-- IFPEGKVNMS --SEFLRFKW 
BACU019821/1-257          EVRDKGDGVY QKGMDFILEK LNHGDWVH-- IFPEGKVNMS --SEFLRFKW 
ENSTTRP00000010820/1-289  EV--RDDGVY QKGMDFILEK LNHGDWVH-- IFPEGKVNMS --SEFLRFKW 


                          201                                                250
bmy_21788T0/1-289         QRGGARAALL HPTPASQP-- ---SVCCATG MNDVLPNSPP YFPRFGQKIT 
ENSP00000299328/1-292     GIGRLIAE-C HLNPIILPLW HV-------G MNDVLPNSPP YFPRFGQKIT 
ENSBTAP00000009807/1-261  GIGRLIAE-C HLNPIILPLW HV-------G MNDVLPNSPP YFPRFGQKIT 
BACU019821/1-257          GIGRLIAE-C HLNPVILPLW HVPSVCCATG MNKVLPNSPP YFPRFGQKIT 
ENSTTRP00000010820/1-289  GIGRLIAE-C HLNPVILPLW HV-------G MNDVLPNSPP YFPRFGQKIT 


                          251                                                300
bmy_21788T0/1-289         VLIGKPFSAL PVLERLRAEN TSAVEIRKAL TDFIQEEFQR LKSQAEQLHS 
ENSP00000299328/1-292     VLIGKPFSAL PVLERLRAEN KSAVEMRKAL TDFIQEEFQH LKTQAEQLHN 
ENSBTAP00000009807/1-261  VLIGKPFSAR PVLERLRAEN KSAVEMRKAL TDFIQEEFQR LKSQAEQLHN 
BACU019821/1-257          VLIGKPFSAL PVLERLRAEN KSAVEIRKAL TDFIQEEFQR LKSQAEQLHN 
ENSTTRP00000010820/1-289  VLIGKPFSAL PVLERLRAEN KSAVEIRKAL TDFIQEEFQR LKSQAEQLHN 


                          301                                                350
bmy_21788T0/1-289         HLQAGR 
ENSP00000299328/1-292     HLQPGR 
ENSBTAP00000009807/1-261  HLQA-R 
BACU019821/1-257          HLQAGR 
ENSTTRP00000010820/1-289  HLQAGR