KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:26 2014 Check: 00 .. Name: bmy_21788T0/1-289 Len: 306 Check: 2808 Weight: 1.00 Name: ENSP00000299328/1-292 Len: 306 Check: 233 Weight: 1.00 Name: ENSBTAP00000009807/1-261 Len: 306 Check: 7517 Weight: 1.00 Name: BACU019821/1-257 Len: 306 Check: 6087 Weight: 1.00 Name: ENSTTRP00000010820/1-289 Len: 306 Check: 93 Weight: 1.00 // 1 50 bmy_21788T0/1-289 MPLHVKWPFP AVPPLTWTLA SSVVMGLVGT YSCFWTKCMN HLTVHNKEVL ENSP00000299328/1-292 MPLHVKWPFP AVPPLTWTLA SSVVMGLVGT YSCFWTKYMN HLTVHNREVL ENSBTAP00000009807/1-261 MPLHVKWPFP AVPPLTWTLA SSVVMGLVGT YSCFWTKCMN HLTVHNKEVL BACU019821/1-257 ---------- ---------- ---------- --------MN HLTVHNKEVL ENSTTRP00000010820/1-289 MPLHVKWPFP AVPPLTWTLA SSVVMGLVGT YSCFWTKYMN HLTVHNKEVL 51 100 bmy_21788T0/1-289 YELIENRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPAAA ENSP00000299328/1-292 YELIEKRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPAAA ENSBTAP00000009807/1-261 YELIENRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPTAA BACU019821/1-257 YELIENRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPAAA ENSTTRP00000010820/1-289 YELIENRGPA TPLITVSNHQ SCMDDPHLWG ILKLRHIWNL KLMRWTPAAA 101 150 bmy_21788T0/1-289 DICFTKELHS HFFSLGKCVP VCRALSDTVF RQMFSR---- --------AR ENSP00000299328/1-292 DICFTKELHS HFFSLGKCVP VCR--GAEFF QAENEGKGVL DTGRHMPGAG ENSBTAP00000009807/1-261 DICFTKELHS HFFSLGKCVP VCR------- ---------- ---------- BACU019821/1-257 DICFTKELHS HFFSLGKCVP VCR--G--FF QGEYERKGIL DT--HVADTG ENSTTRP00000010820/1-289 DICFTKELHS HFFSLGKCVP VCREAG--FF QGEYERKGIL DT-KHVADTG 151 200 bmy_21788T0/1-289 EAWLRESDAW SPNVTSILSF CRCGMSVSQG CGPGRGASLS GVGGWVSSGW ENSP00000299328/1-292 KRREKGDGVY QKGMDFILEK LNHGDWVH-- IFPEGKVNMS --SEFLRFKW ENSBTAP00000009807/1-261 -----GDGVY QKGMDFILEK LNHGDWVH-- IFPEGKVNMS --SEFLRFKW BACU019821/1-257 EVRDKGDGVY QKGMDFILEK LNHGDWVH-- IFPEGKVNMS --SEFLRFKW ENSTTRP00000010820/1-289 EV--RDDGVY QKGMDFILEK LNHGDWVH-- IFPEGKVNMS --SEFLRFKW 201 250 bmy_21788T0/1-289 QRGGARAALL HPTPASQP-- ---SVCCATG MNDVLPNSPP YFPRFGQKIT ENSP00000299328/1-292 GIGRLIAE-C HLNPIILPLW HV-------G MNDVLPNSPP YFPRFGQKIT ENSBTAP00000009807/1-261 GIGRLIAE-C HLNPIILPLW HV-------G MNDVLPNSPP YFPRFGQKIT BACU019821/1-257 GIGRLIAE-C HLNPVILPLW HVPSVCCATG MNKVLPNSPP YFPRFGQKIT ENSTTRP00000010820/1-289 GIGRLIAE-C HLNPVILPLW HV-------G MNDVLPNSPP YFPRFGQKIT 251 300 bmy_21788T0/1-289 VLIGKPFSAL PVLERLRAEN TSAVEIRKAL TDFIQEEFQR LKSQAEQLHS ENSP00000299328/1-292 VLIGKPFSAL PVLERLRAEN KSAVEMRKAL TDFIQEEFQH LKTQAEQLHN ENSBTAP00000009807/1-261 VLIGKPFSAR PVLERLRAEN KSAVEMRKAL TDFIQEEFQR LKSQAEQLHN BACU019821/1-257 VLIGKPFSAL PVLERLRAEN KSAVEIRKAL TDFIQEEFQR LKSQAEQLHN ENSTTRP00000010820/1-289 VLIGKPFSAL PVLERLRAEN KSAVEIRKAL TDFIQEEFQR LKSQAEQLHN 301 350 bmy_21788T0/1-289 HLQAGR ENSP00000299328/1-292 HLQPGR ENSBTAP00000009807/1-261 HLQA-R BACU019821/1-257 HLQAGR ENSTTRP00000010820/1-289 HLQAGR