KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:29 2014 Check: 00 .. Name: ENSTTRP00000013952/1-843 Len: 878 Check: 5435 Weight: 1.00 Name: BACU005497/1-796 Len: 878 Check: 1143 Weight: 1.00 Name: bmy_17114T0/1-755 Len: 878 Check: 7875 Weight: 1.00 Name: ENSP00000354125/1-814 Len: 878 Check: 1503 Weight: 1.00 Name: ENSBTAP00000009832/1-786 Len: 878 Check: 6197 Weight: 1.00 // 1 50 ENSTTRP00000013952/1-843 MQDAENVAAP EAAEQRAEIG QQQPTAEPPP GEEPAR---P GAQEAAGGED BACU005497/1-796 MQDAENVAAP EAAXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17114T0/1-755 MQDAENVAAP EAAEQRAETG QQQPTAEPPP GEEPAR---P GAQEAAGGED ENSP00000354125/1-814 MQDAENVAVP EAAEERAEPG QQQPAAEPPP AEGLLRPAGP GAPEAAGTEA ENSBTAP00000009832/1-786 MQDAENVAAP EAAEQRAEPG PEQAAAEPSP GAEVAR---P GVQEAAGGED 51 100 ENSTTRP00000013952/1-843 -------EEA GPGPDLPAEP AADGEEKADA THGVSPPP-- --PE---DPP BACU005497/1-796 -------XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- --XXXXXXXX bmy_17114T0/1-755 -------EEA EPGPDVPAEP AAD-EEEAGA THGVSPPP-- --PE---DSP ENSP00000354125/1-814 SSEEVGIAEA GPESEVRTEP AAEAEAASGP SESPSPPAAE ELPGSHAEPP ENSBTAP00000009832/1-786 -------AEA GPGPEGPAEP AADGEGKADA TPGATPPP-- --PE---ESS 101 150 ENSTTRP00000013952/1-843 TPAAGEAPAG QARDCVRD-R SEGSGGEPGG ---------- -AAENGGADE BACU005497/1-796 XXXXXXXXXG QVRDAASETG SEGSSGEPGG ---------- -AAENGGADE bmy_17114T0/1-755 TPAADEAPAG QARDAASETG SEGSSGEPGG ---------- -AAENGGADE ENSP00000354125/1-814 VPAQGEAPGE QARDERSDSR AQAVSEDAGG NEGRAAEAEP RALENGDADE ENSBTAP00000009832/1-786 AQLAGEAPAE QAQDAAAEAG SEGAGGDPDG ---------- -AAEDGGADE 151 200 ENSTTRP00000013952/1-843 PSFSDPEDFV EDVSEEELLG DVLKDRPQEA DGIDSVIVVD NVPQVGPDRL BACU005497/1-796 PSFSDPEDFV EDVSEEELLG DILKDRPQEA DGIDSVIVVD NVPQVGPDRL bmy_17114T0/1-755 PSFSDPEDFV EDVSEEELLG DILKDRPQEA DGIDSVIVVD NVPQVGPDRL ENSP00000354125/1-814 PSFSDPEDFV DDVSEEELLG DVLKDRPQEA DGIDSVIVVD NVPQVGPDRL ENSBTAP00000009832/1-786 PSFSDPEDFV DDVSEEELLA DVLKDRPQEA DGIDSVIVVD NVPQVGPDRL 201 250 ENSTTRP00000013952/1-843 EKLKNVIHKI FSKFGKITND FYPEEDGRTK GYIFLEYASP AHALDAVKNA BACU005497/1-796 EKLKNVIHKI FSKFGKITND FYPEEDGRTK GYIFLEYASP AHALDAVKNA bmy_17114T0/1-755 EKLKNVIHKI FSKFGKITND FYPEEDGRTK GYIFLEYASP AHALDAVKNA ENSP00000354125/1-814 EKLKNVIHKI FSKFGKITND FYPEEDGKTK GYIFLEYASP AHAVDAVKNA ENSBTAP00000009832/1-786 EKLKNVIHKI FSKFGKITND FYPEEDGRTK GYIFLEYASP AHALDAVKNA 251 300 ENSTTRP00000013952/1-843 DGYKLDKQHT FRVNLFTDFD XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU005497/1-796 DGYKLDKQHT FRVNLFTDFD KYMTISDEWD IPEKQPFKDL GNLRYWLEEA bmy_17114T0/1-755 DGYKLDKQHT FRVNLFTDFD KYMTISDEWD IPEKQPFKDL GNLRYWLEEA ENSP00000354125/1-814 DGYKLDKQHT FRVNLFTDFD KYMTISDEWD IPEKQPFKDL GNLRYWLEEA ENSBTAP00000009832/1-786 DGYKLDKQHT FRVNLFTDFD KYMTISDEWD IPEKQPFKDL GNLRYWLEEA 301 350 ENSTTRP00000013952/1-843 XXXXXXXXXX E-GDRTSILG NDVKDPVS-E ERARWTETYV RWSPKGTYLA BACU005497/1-796 ECRDQYSVIF ESGDRTSIFW NDVKDPVSIE ERARWTETYV RWSPKGTYLA bmy_17114T0/1-755 ECRDQYSVIF ESGDRTSIFW NDVKDPVSIE ERARWTETYV RWSPKGTYLA ENSP00000354125/1-814 ECRDQYSVIF ESGDRTSIFW NDVKDPVSIE ERARWTETYV RWSPKGTYLA ENSBTAP00000009832/1-786 ECRDQYSVIF ESGDRTSIFW NDVKDPVSIE ERARWTETYV RWSPKGTYLA 351 400 ENSTTRP00000013952/1-843 TFHQRGIALW GGEKFKQIQR FSHQGVQLID FSPCEXXXXX XXXXXXXXXX BACU005497/1-796 TFHQRGIALW GGEKFKQIQR FSHQGVQLID FSPCERYLVT FSPLMDTQDD bmy_17114T0/1-755 TFHQRGIALW GGEKFKQIQR FSHQG----- ---------- --------DD ENSP00000354125/1-814 TFHQRGIALW GGEKFKQIQR FSHQGVQLID FSPCERYLVT FSPLMDTQDD ENSBTAP00000009832/1-786 TFHQRGIALW GGEKFKQIQR FSHQGVQLID FSPCERYLVT FSPLMDTQDD 401 450 ENSTTRP00000013952/1-843 XXXXXXXXXX XXXXXXXXXX XSSAHWPIFK WSHDGKFFAR MTLDTLSIYE BACU005497/1-796 PQAIIIWDIL TGQKKRGFHC ESSAHWPIFK WSHDGKFFAR MTLDTLSIYE bmy_17114T0/1-755 PQAIIIWDIL TGQKKRGFHC ESSAHWPIFK WSHDGKFFAR MTLDTLSIYE ENSP00000354125/1-814 PQAIIIWDIL TGHKKRGFHC ESSAHWPIFK WSHDGKFFAR MTLDTLSIYE ENSBTAP00000009832/1-786 PQAIIIWDIL TGQKKRGFHC ESSAHWPIFK WSHDGKFFAR MTLDTLSIYE 451 500 ENSTTRP00000013952/1-843 TPSMGLLDKK SLKISGIKDF SWSPGGNIIA FWVPEDKDIP ARVTLMQLPT BACU005497/1-796 TPSMGLLDKK SLKISGIKDF SWSPGGNIIA FWVPEDKDIP ARVTLMQLPT bmy_17114T0/1-755 TPSMGLLDKK SLKISGIKDF SWSPGGNIIA FWVPEDKDIP ARVTLMQLPT ENSP00000354125/1-814 TPSMGLLDKK SLKISGIKDF SWSPGGNIIA FWVPEDKDIP ARVTLMQLPT ENSBTAP00000009832/1-786 TPSMGLLDKK SLKISGIKDF SWSPGGNIIA FWVPEDKDIP ARVTLMQLPT 501 550 ENSTTRP00000013952/1-843 RQEIRVRNLF NVVDCKLHWQ KNGDYLCVKV DRTPKGTQGV VTNFEIFRMR BACU005497/1-796 RQEIRVRNLF NVVDCKLHWQ KNGDYLCVKV DRTPKGTQGV VTNFEIFRMR bmy_17114T0/1-755 RQEIRVRNLF NVVDCKLHWQ KNGDYLCVKV DRTPKGTQAS MLDTVL---- ENSP00000354125/1-814 RQEIRVRNLF NVVDCKLHWQ KNGDYLCVKV DRTPKGTQGV VTNFEIFRMR ENSBTAP00000009832/1-786 RQEIRVRNLF NVVDCKLHWQ KNGDYLCVKV DRTPKGTQGV VTNFEIFRMR 551 600 ENSTTRP00000013952/1-843 EKQVPVDVVE MK----EPII AFAWEPNGSK FAVLHGEAPR ISVSFYHVKN BACU005497/1-796 EKQVPVDVVE MKGKSHQTII AFAWEPNGSK FAVLHGEAPR ISVSFYHVKN bmy_17114T0/1-755 ---QPDFLLV CI----KTII AFAWEPNGSK FAVLHGEAPR ISVSFYHVKN ENSP00000354125/1-814 EKQVPVDVVE MK----ETII AFAWEPNGSK FAVLHGEAPR ISVSFYHVKN ENSBTAP00000009832/1-786 EKQVPVDVVE MK----ETII AFAWEPNGSK FAVLHGEAPR ISVSFYHVKN 601 650 ENSTTRP00000013952/1-843 NGKIELIKMF DKQQANTIFW SPQGQFVVLA GLRSMNGALA FVDTSDCTVM BACU005497/1-796 NGKIELIKMF DKQQANTIFW SPQGQFVVLA GLRSMNGALA FVDTSDCTVM bmy_17114T0/1-755 NGKIELIKMF DKQQANTIFW SPQGQFVVLA GLRSMNGALA FVDASDCTVM ENSP00000354125/1-814 NGKIELIKMF DKQQANTIFW SPQGQFVVLA GLRSMNGALA FVDTSDCTVM ENSBTAP00000009832/1-786 NGKIELIKMF DKQQANTIFW SPQGQFVVLA GLRSMNGALA FVDTSDCTVM 651 700 ENSTTRP00000013952/1-843 NIAEHYMASD VEWDPTGRYV ITSVSWWSHK VDNAYWLWTF QGRLLQKNSK BACU005497/1-796 NIAEHYMASD VEWDPTGRYV ITSVSWWSHK VDNAYWLWTF QGRLLQKNSK bmy_17114T0/1-755 NIAEHYMASD VEWDPTGRYV ITSVSWWSHK VDNAYWLWTF QGRLLQKNSK ENSP00000354125/1-814 NIAEHYMASD VEWDPTGRYV VTSVSWWSHK VDNAYWLWTF QGRLLQKNNK ENSBTAP00000009832/1-786 NIAEHYMASD VEWDPTGRYV VTSVSWWSHK VDNAYWLWTF QGRLLQKNSK 701 750 ENSTTRP00000013952/1-843 DRFCQLLWRP RPPTLLSQDQ VKQIKKDLKK YSKIFEQKDR LSQSKASKEL BACU005497/1-796 DRFCQLLWRP RPPTLLSQDQ VKQIKKDLKK YSKIFEQKDR LSQSKASKEL bmy_17114T0/1-755 DRFCQLLWRP RPPTLLSQDQ VKQIKKDLKK YSKIFEQKDR LSQSKASKEL ENSP00000354125/1-814 DRFCQLLWRP RPPTLLSQEQ IKQIKKDLKK YSKIFEQKDR LSQSKASKEL ENSBTAP00000009832/1-786 DRFCQLLWRP RPPTLLSQDQ IKQIKKDLKK YSKIFEQKDR LSQSKASKEL 751 800 ENSTTRP00000013952/1-843 VERRRTMMED FRKYRKMAQE LYMEQKNARL ELRGGVDTDE LDSNVDDWEE BACU005497/1-796 VERRRTMMED FRKYRKMAQE LYMEQKNARL ELRGGVDTDE LDSNVDDWEE bmy_17114T0/1-755 VERRRTMMED FRKYRKMAQE LYMEQKNARL ELRGGVDTDE LDSNVDDWEE ENSP00000354125/1-814 VERRRTMMED FRKYRKMAQE LYMEQKNERL ELRGGVDTDE LDSNVDDWEE ENSBTAP00000009832/1-786 VERRRTMMED FRKYRKMAQE LYMEQKNARL ELRGGVDTDE LDSNVDDWEE 801 850 ENSTTRP00000013952/1-843 ETIEFFVTEE IIPETRSDRE HCASPCVVWN RGHPFAESLP TPDFSLRFLS BACU005497/1-796 ETIEFFVTEE IIPLGSQE-- ---------- ---------- ---------- bmy_17114T0/1-755 ETIEFFVTEE IIPLGNQE-- ---------- ---------- ---------- ENSP00000354125/1-814 ETIEFFVTEE IIPLGNQE-- ---------- ---------- ---------- ENSBTAP00000009832/1-786 ETIEFFVTEE IIPLGNQE-- ---------- ---------- ---------- 851 900 ENSTTRP00000013952/1-843 PGCGRAWDSP SPYVAVPFSP WYPGWGRF BACU005497/1-796 ---------- ---------- -------- bmy_17114T0/1-755 ---------- ---------- -------- ENSP00000354125/1-814 ---------- ---------- -------- ENSBTAP00000009832/1-786 ---------- ---------- --------