KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:30 2014 Check: 00 .. Name: ENSTTRP00000016307/1-618 Len: 630 Check: 1374 Weight: 1.00 Name: ENSBTAP00000009846/1-629 Len: 630 Check: 8998 Weight: 1.00 Name: ENSP00000324693/1-618 Len: 630 Check: 5573 Weight: 1.00 Name: bmy_15214T0/1-341 Len: 630 Check: 5164 Weight: 1.00 Name: BACU016787/1-332 Len: 630 Check: 7442 Weight: 1.00 // 1 50 ENSTTRP00000016307/1-618 MTQEYDNKRP VLVLQNEALY PQRRSYTSED EAWKSFLENP LTAATKAMMS ENSBTAP00000009846/1-629 MTQEYDNKRP VLVLQNEALY SQRRSYTSED EAWKSFLENP LTAATKAMMS ENSP00000324693/1-618 MTQEYDNKRP VLVLQNEALY PQRRSYTSED EAWKSFLENP LTAATKAMMS bmy_15214T0/1-341 ---------- ---------- ---------- ---------- -------MMS BACU016787/1-332 ---------- ---------- ---------- ---------- -------MMS 51 100 ENSTTRP00000016307/1-618 INGDEDSAAA LGLLYDYYKX XXXXXXXXXX XXXXXXXXXX XXXNSISNVT ENSBTAP00000009846/1-629 INGDEDSAAA LGLLYDYYKV PRERRSSAAK ADVEHAEPDH SKRN-VPNVT ENSP00000324693/1-618 INGDEDSAAA LGLLYDYYKV PRERRSSTAK PEVEHPEPDH SKRNSIPIVT bmy_15214T0/1-341 INGDEDSAAA LGLLYDYYKV PRERRSSTAK PDVEHPEPDH SKRNSISNVT BACU016787/1-332 INGDEDSAAA LGLLYDYYKV PRERRSSTAK PDVEHPEPDH SKRNSISNVT 101 150 ENSTTRP00000016307/1-618 EQPLISAGEN RVQVLKNVPF NIVLPHGNQL GIDKRGHLTA PDTTVTVSIA ENSBTAP00000009846/1-629 EQPLISAGEN RVQVLKNVPF NIVLPHGNQL GIDKRGHPTA PDTTVTVSIS ENSP00000324693/1-618 EQPLISAGEN RVQVLKNVPF NIVLPHGNQL GIDKRGHLTA PDTTVTVSIA bmy_15214T0/1-341 EQPLISAGDN RVQVLKNVPF NIVLPHGNQL GIDKRGHLTA PDTTVTVSIA BACU016787/1-332 EQPLISAGEN RVQVLKNMPF NIVLPHGNQL GIDKRGHLTA PDTTVTVSIA 151 200 ENSTTRP00000016307/1-618 AMPTHSIKTE TQHHGFAVGI PPAVYHPEPT ERVVVFDRNL NADQFSSGAQ ENSBTAP00000009846/1-629 AMPTHAIKTE SQPHGFTVGI PPAVYHPEPT ERVVVFDRNL NADQFGSGAQ ENSP00000324693/1-618 TMPTHSIKTE TQPHGFAVGI PPAVYHPEPT ERVVVFDRNL NTDQFSSGAQ bmy_15214T0/1-341 AMPTHSIKTE TQHHGFAVGI PPAVYHPEPT ERVVVFDRNL NADQFSSGAQ BACU016787/1-332 AMPTHSIKTE TQHHGFAVGI PPAVYHPEPT ERVVVFDRNL NADQFSSGAQ 201 250 ENSTTRP00000016307/1-618 PPNAQRRTPD STFSETFKEG VQEXXXXXXX SLRMPGMNSE DYVFDSVSGN ENSBTAP00000009846/1-629 PPNAQRRTPD STFSETFKEG VQEVFFPSDL SLRMPGMNSE DYVFDSVSGN ENSP00000324693/1-618 APNAQRRTPD STFSETFKEG VQEVFFPSDL SLRMPGMNSE DYVFDSVSGN bmy_15214T0/1-341 PPNAQRRTPD STFSETFKEG VQEVFFPSDL SLRMPGMNSE DYVFDSVSGN BACU016787/1-332 PPNAQRRTPD STFSETFKEG VQEVFFPSDL SLRMPGMNSE DYVFDSVSGN 251 300 ENSTTRP00000016307/1-618 NFEYTLEASK SLRQKPGDST MTYLNKGQFY PVTLREVSSN EGIHHPISKV ENSBTAP00000009846/1-629 NFEYTLEASK SLRQKPGDST MTYLNKGQFY PVTLKEVSGS EAVHHPIGKV ENSP00000324693/1-618 NFEYTLEASK SLRQKPGDST MTYLNKGQFY PITLKEVSSS EGIHHPISKV bmy_15214T0/1-341 NFEYTLEASK SLRQKPGDST MTYLNKGQFY PVTLKEVGSS EGIHHPISKV BACU016787/1-332 NFEYTLEASK SLRQKPGDST MTYLNKGQFY PVTLKEVGSS EGIHHPISKV 301 350 ENSTTRP00000016307/1-618 RSVIMVVFAE DKSREDQLRH WKYWHSRQHT AKQRCIDIAD YKESFNTISN ENSBTAP00000009846/1-629 RSVIMVVFAE DKSREDQLRH WKYWHSRQHT AKQRCIDIAD YKESFNTISN ENSP00000324693/1-618 RSVIMVVFAE DKSREDQLRH WKYWHSRQHT AKQRCIDIAD YKESFNTISN bmy_15214T0/1-341 RSVIMVVFAE DKSREDQLRH WKYWHSRQHT AKQRCIDIAD YKESFNTISN BACU016787/1-332 RSVIMVVFAE DKSREDQLRH WKYWHSRQHT AKQRCIDIAD YKESFNTISN 351 400 ENSTTRP00000016307/1-618 IEEIAYNAIS FTWDINDEAK XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000009846/1-629 IEEIAYNAIS FTWDINDEAK VFISVNCLST DFSSQKGVKG LPLNIQIDTY ENSP00000324693/1-618 IEEIAYNAIS FTWDINDEAK VFISVNCLST DFSSQKGVKG LPLNIQVDTY bmy_15214T0/1-341 IEEIAYNAIS FTWDINDEAK V-----ALL- ---------- ---------- BACU016787/1-332 IEEIAYNAIS FTWDINDEAK G-----CTS- ---------- ---------- 401 450 ENSTTRP00000016307/1-618 XXXXXXXXXX XXXXXXXXXX XXXGAERKIR DEERKQSKRK ---------- ENSBTAP00000009846/1-629 SYNNRSNKPV HRAYCQIKVF CDKGAERKIR DEERKQSKRK GKCTDPSSQL ENSP00000324693/1-618 SYNNRSNKPV HRAYCQIKVF CDKGAERKIR DEERKQSKRK ---------- bmy_15214T0/1-341 ---------- ---------- ---------- ---------- ---------- BACU016787/1-332 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000016307/1-618 --VSDVKVPL LPSHKRMDIT VFKPFIDLDT QPVLFIPDVH FANLQRGAHV ENSBTAP00000009846/1-629 NAFSDVKVPL LPSHKRMDIT VFKPFIDLDT QPVLFIPDVH FASLQRGAHV ENSP00000324693/1-618 --VSDVKVPL LPSHKRMDIT VFKPFIDLDT QPVLFIPDVH FANLQRGTHV bmy_15214T0/1-341 ---------- ---------- ---------- ---------- ---------- BACU016787/1-332 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000016307/1-618 LPIASEELEG EGSNLKRGPY GSEDDFVIPP PAKLSRVEEP KRVLLYVRKE ENSBTAP00000009846/1-629 LPIASEELEG EGSSLKRGPY SAEDDFVIPP PAKLTRVEEP KRVLLYVRKE ENSP00000324693/1-618 LPIASEELEG EGSVLKRGPY GTEDDFAVPP STKLARIEEP KRVLLYVRKE bmy_15214T0/1-341 ---------- ---------- ---------- ---------- ---------- BACU016787/1-332 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000016307/1-618 SEEVFDALML KTPSLKGLME AISDKYDVPQ DKIGKIFKKC KKGILVNMDD ENSBTAP00000009846/1-629 SEEVFDALML KTPSLKGLME AISDKYDVPQ EKIGKIFKKC KKGILVNMDD ENSP00000324693/1-618 SEEVFDALML KTPSLKGLME AISDKYDVPH DKIGKIFKKC KKGILVNMDD bmy_15214T0/1-341 ---VFTPLLR RRENKRG--- ---------- ---------- ---------- BACU016787/1-332 ---VKNFF-- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000016307/1-618 NIVKHYSNED TFQLQIEEAG GLYKLTLTEI ENSBTAP00000009846/1-629 NIVKHYSNED TFQLQMEESG GSFKLTLTEI ENSP00000324693/1-618 NIVKHYSNED TFQLQIEEAG GSYKLTLTEI bmy_15214T0/1-341 ---------- ---------- ---------- BACU016787/1-332 ---------- ---------- ----------