KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:31 2014 Check: 00 .. Name: ENSP00000361066/1-1424 Len: 1501 Check: 5738 Weight: 1.00 Name: ENSBTAP00000009850/1-1408 Len: 1501 Check: 7616 Weight: 1.00 Name: bmy_19762T0/1-1300 Len: 1501 Check: 9352 Weight: 1.00 Name: BACU018318/1-1404 Len: 1501 Check: 5274 Weight: 1.00 Name: ENSTTRP00000000019/1-1404 Len: 1501 Check: 4545 Weight: 1.00 // 1 50 ENSP00000361066/1-1424 MSGLGEN-LD PLASDSRKRK LPCDTPGQGL TCSGEKRRRE QESKYIEELA ENSBTAP00000009850/1-1408 MSGLGENALD PLAPDSRKRK LPCDPPGQGL ACSGEKWRRE QESKYIEELA bmy_19762T0/1-1300 MSGLGENSLD PLAPDSRKRK LPCDTPGQGL TCSGEKWRRE QESKYIEELA BACU018318/1-1404 MSGLGENSLD PLAPDSRKRK LPCDTPGQGL TCSGEKWRRE QESKYIEELA ENSTTRP00000000019/1-1404 MSGLGENSLD PLAPDSRKRK LPCDTPGQGL TCSGEKWRRE QESKYIEELA 51 100 ENSP00000361066/1-1424 ELISANLSDI DNFNVKPDKC AILKETVRQI RQIKEQGKTI SNDDDVQKAD ENSBTAP00000009850/1-1408 ELISANLSDI DNFNVKPDKC AILKETVRQI RQIKEQGKAI TSDDDVQKAD bmy_19762T0/1-1300 ELISANLSDI DNFNVKPDKC AILKETVRQI RQIKEQGKAI SSDDDVQKAD BACU018318/1-1404 ELISANLSDI DNFNVKPDKC AILKETVRQI RQIKEQGKAI SSDDDVQKAD ENSTTRP00000000019/1-1404 ELISANLSDI DNFNVKPDKC AILKETVRQI RQIKEQGKAI SSDDDVQKAD 101 150 ENSP00000361066/1-1424 VSSTGQGVID KDSLGPLLLQ A-LDGFLFVV NRDGNIVFVS ENVTQYLQYK ENSBTAP00000009850/1-1408 VSSTGQGVID KDSLGPLLLQ A-LDGFLFVV NREGNIVFVS ENVTQYLQYK bmy_19762T0/1-1300 VSSTGQGVID KDSLGPLLLQ A--------- ---------- ---------- BACU018318/1-1404 VSSTGQGVID KDSLGPLLLQ ASLDGFLFVV NREGNIVFVS ENVTQYLQYK ENSTTRP00000000019/1-1404 VSSTGQGVID KDSLGPLLLQ A-LDGFLFVV NREGNIVFVS ENVTQYLQYM 151 200 ENSP00000361066/1-1424 QEDLVNTSVY NILHEEDRKD FLKNLPKSTV NGVSWTNETQ RQKSHTFNCR ENSBTAP00000009850/1-1408 QEDLVNTSVY NILHEEDRKD FLKNLPKSTV NGVTWTNETQ RQKSHTFNCR bmy_19762T0/1-1300 ---------- ---------- ---------I NGVTWTNETQ RQKSHTFNCR BACU018318/1-1404 QEDLVNTSVY NILHEEDRKD FLKNLPKSTV NGVTWTNETQ RQKSHTFNCR ENSTTRP00000000019/1-1404 QEDLVNTSVY NILHEEDRKD FLKNLPKSTV NGVTWTNETQ RQKSHTFNCR 201 250 ENSP00000361066/1-1424 MLMKTPHDIL EDINASPEMR QRYETMQCFA LSQPRAMMEE GEDLQSCMIC ENSBTAP00000009850/1-1408 MLMKIPHDIL EDINTSPEMR QRYETMQCFA LSQPRAMMEE GEDLQSCMIC bmy_19762T0/1-1300 MLMKIPHBIL EDINTNPEMR QKYETMQCFA LSQPRAMMEE GEDLQSCMIC BACU018318/1-1404 MLMKIPHDIL EDINTNPEMR QKYETMQCFA LSQPRAMMEE GEDLQSCMIC ENSTTRP00000000019/1-1404 MLMKIPHDVL EDINTSPEMR QKYETMQCFA LSQPRAMMEE GEDLQSCMIC 251 300 ENSP00000361066/1-1424 VARRITTGER TFPSNPESFI TRHDLSGKVV NIDTNSLRSS MRPGFEDIIR ENSBTAP00000009850/1-1408 VARRITTGER AFPSSPESFI TRHDLSGKVI TIDTNSLRSS MRPGFEDIIR bmy_19762T0/1-1300 VARRITTGER AFPSNPESFI TRHDLSGKVV NIDTNSLRSS MRPGFEDIIR BACU018318/1-1404 VARRITTGER ALPSHPESFI TRHDLSGKVV NIDTNSLRSS MRPGFEDIIR ENSTTRP00000000019/1-1404 VARRITTGER AFPSNPESFI TRHDLSGKVV NIDTNSLRSS MRPGFEDIIR 301 350 ENSP00000361066/1-1424 RCIQRFFSLN DGQSWSQKRH YQE------- ---------- AYLNGHAETP ENSBTAP00000009850/1-1408 RCIQRFFSLN DGQSWSQKRH YQE------- ---------- AYIHGHAETP bmy_19762T0/1-1300 RCIQRFFSLN DGQSWSQKRH YQEGKEFGVV VTSNGIFSPK AYIHGHAETP BACU018318/1-1404 RCIQRFFSLN DGQSWSQKRH YQE------- ---------- AYIHGHAETP ENSTTRP00000000019/1-1404 RCIQRFFSLN DGQSWSQKRH YQE------- ---------- AYIHGHAETP 351 400 ENSP00000361066/1-1424 VYRFSLADGT IVTAQTKSKL FRNPVTNDRH GFVSTHFLQR EQNGYRPNPN ENSBTAP00000009850/1-1408 LYRFSLADGT IVTAQTKSKL FRNPVTNDRH GFVSTHFLQR EQNGYRPNPN bmy_19762T0/1-1300 VYRFSLADGT IVTAQTKSKL FRNPVTNDRH GFVSTHFLQR EQNGYRPNAN BACU018318/1-1404 VYRFSLADGT IVTAQTKSKL FRNPVTNDRH GFVSTHFLQR EQNGYRPNPN ENSTTRP00000000019/1-1404 VYRFSLADGT VVTAQTKSKL FRNPVTNDRH GFVSTHFLQR EQNGYRPNPN 401 450 ENSP00000361066/1-1424 PVGQGIRPPM AGCNSSVGGM SMSPNQGLQM PSSRAYGLAD PSTTGQMSGA ENSBTAP00000009850/1-1408 PVGQGIRPPA AGCNSSVGGM SMSPNPGLQM LSSRTYGLTD AGTAGQMSGA bmy_19762T0/1-1300 PVGPGIRPPA AGCNSSVGSM NMSPNPGLQM LSSRTYGLAE PGTAGQMGGA BACU018318/1-1404 PVGQGIRPPA AGCNSSVGSV NMSPNPGLQM LSSRTYGLAE PGTTGQMTGA ENSTTRP00000000019/1-1404 PVGQGIRPPA AGCNSSVGSM NMSPNPGLQM LSSRTYGVAE PGATGQMSGA 451 500 ENSP00000361066/1-1424 RYGGSSNIAS LTPGPGMQSP SSYQNNNYGL NMSSPPHGSP GLAPNQQNIM ENSBTAP00000009850/1-1408 RYGASGSIAS MNPGPGMQSP SSYQNSTYGL NMSSPPHGSP GLGSSQQNIM bmy_19762T0/1-1300 RYGPSGSIAS VNPGPGMQSP SSYQNSNYGL NMSSPPHGSP GLGSSQQNIM BACU018318/1-1404 RYGPSGSIAS MNPGPGMQSP SSYQNSNYGL NMSSPPHGSP GLGSSQQNIM ENSTTRP00000000019/1-1404 RYGPSGSIAS VNPGPGMQSP SSYQNNNYGL NMSSPPHGSP GLGSSQQNIM 501 550 ENSP00000361066/1-1424 ISPRNRGSPK IASHQFSPVA --GVHSPMAS SGNTGNHSFS SSSLSALQAI ENSBTAP00000009850/1-1408 ISPRNRGSPK MASHQFSPVA DPGVHSPMGS SGNTVSHSFS SSSLSALQAI bmy_19762T0/1-1300 ISPRNRGSPK MASHQFSPVA --GVHSPMGS SGNTGSHSFS SSSLSALQAI BACU018318/1-1404 ISPRNRGSPK MASHQFSPVA --GVHSPMGS SGNTGSHSFS SSSLSALQAI ENSTTRP00000000019/1-1404 ISPRNRGSPK MASHQFSPVA --GVHSPMGS SGNTGSHSFS SSSLSALQAI 551 600 ENSP00000361066/1-1424 SEGVGTSLLS TLSSPGPKLD NSPNMNITQP SKVSNQDSKS PLGFYCDQNP ENSBTAP00000009850/1-1408 SEGVGTSLLS TLSSPGPKLD NSPNMNITQP SKVNSQDSKS PLGLYCDQNP bmy_19762T0/1-1300 SEGVGTSLLS TLSSPGPKLD NSPNMNVSQP SKVNSQDSKS PLGLYCDQNP BACU018318/1-1404 SEGVGTSLLS TLSSPGPKLD NSPNMNVSQP SKVNSQDSKS PLGLYCDQNP ENSTTRP00000000019/1-1404 SEGVGTSLLS TLSSPGPKLD NSPNMNVSQP SKVNSQDSKS PLGLYCDQNP 601 650 ENSP00000361066/1-1424 VESSMCQSNS RDHLSDKESK ESSVEGAENQ RGPLESKGHK KLLQLLTCSS ENSBTAP00000009850/1-1408 VESSMCQSNS RDHINDKESK ESGVEGSENQ RAPLESKGHK KLLQLLTCSS bmy_19762T0/1-1300 VESSMCQSNS RDHLNDKESK ESSVEGPENQ RGPLESKGHK KLLQLLTCSS BACU018318/1-1404 VESSMCQSNS RDHLNDKESK ESSVEGPENQ RGPLESKGHK KLLQLLTCSS ENSTTRP00000000019/1-1404 VESSMCQSNS RDHLNDKESK ESSAEGPENQ RGPLESKGHK KLLQLLTCSS 651 700 ENSP00000361066/1-1424 DDRGHSSLTN SPLDSSCKES SVSVTSPSGV SSSTSGGVSS TSNMHGSLLQ ENSBTAP00000009850/1-1408 DDRGHSSLTN SPLDSSCKDS SISVTSPSGV SSSTSGGVSS TSNMHGSLLQ bmy_19762T0/1-1300 EDRGHSSLTN SPLDSSCKDS SISVTSPSGV SSSTSGGVSS TSNMHGSLLQ BACU018318/1-1404 EDRGHSSLTN SPLDSSCKDS SISVTSPSGV SSSTSGGVSS TSNMHGSLLQ ENSTTRP00000000019/1-1404 EDRGHSSLTN SPLDSSCKDS SISVTSPSGV SSSTSGGVSS TSNMHGSLLQ 701 750 ENSP00000361066/1-1424 EKHRILHKLL QNGNSPAEVA KITAEATGKD TSSITSCGDG NVVKQEQLSP ENSBTAP00000009850/1-1408 EKHRILHKLL QNGNSPAEVA KITAEATGKD TSSTTSCVEG N-VKQEQLSP bmy_19762T0/1-1300 EKHRILHKLL QNGNSPAEVA KITAEATGKD TSSTTSCVEG N-VKQEQLSP BACU018318/1-1404 EKHRILHKLL QNGNSPAEVA KITAEATGKD TSSTTSCVEG N-VKQEQLSP ENSTTRP00000000019/1-1404 EKHRILHKLL QNGNSPAEVA KITAEATGKD TSSTTSCVEG N-VKQEQLSP 751 800 ENSP00000361066/1-1424 KKKENNALLR YLLDRDDPSD ALSKELQPQV E-GVDNKMSQ CTSSTIPSSS ENSBTAP00000009850/1-1408 KKKESNALLR YLLDRDDPSD TLAKELQPKV E-GVDSKMSQ CSSSAIPSSS bmy_19762T0/1-1300 KRKENNALLR YLLDRDDPSD TLSKELQPKV EGGVDGKVSQ CSSSTIPSSS BACU018318/1-1404 KRKENNALLR YLLDRDDPSD TLSKELQPKV EGGVDGKVSQ CSSSTIPSSS ENSTTRP00000000019/1-1404 KRKENNALLR YLLDRDDPSD TLSKELQPKV EGGVDSKVSQ CSSSTIPSSS 801 850 ENSP00000361066/1-1424 QEKDPKIKTE TSEEGSGDLD NLDAILGDLT SSDFYNNSIS SNGSHLGTKQ ENSBTAP00000009850/1-1408 QEKDAKIKTE TNEEGSGDLD NLDAILGDLT NSDFYNNSIP TSGSNLGTKP bmy_19762T0/1-1300 QGKDAKIKTE TSEEGSGDLD NLDAILGDLT NSDFYNNSIS TNGSNLVTKQ BACU018318/1-1404 QGKDAKIKTE TNEEGSGDLD NLDAILGDLT NSDFYNNSIS TNGSNLVTKQ ENSTTRP00000000019/1-1404 QGKDAKIKTE TNEEGSGDLD NLDAILGDLT NSDFYSNSIS TNGSNLVTKQ 851 900 ENSP00000361066/1-1424 QVFQGTNSLG LKSSQSVQSI RPPYNRAVSL DSPVSVGSSP PVKNISAFPM ENSBTAP00000009850/1-1408 QMFQGANSLG LRSPQPVQSV RPPYNRAVSL DSPVSVGSSP PVKNIGAFPM bmy_19762T0/1-1300 QMFQGTNSLG KKELDFI--- ---------- ---------- ----LAAFEL BACU018318/1-1404 QMFQGTNSLG LRSPQSVQSV RPPYNRAVSL DSPVSVGSSP PVKNIGAFPM ENSTTRP00000000019/1-1404 QMFQGTNSLG LRSPQSVQSV RPPYNRAVSL DSPVSVGSSP PVKNIGAFPM 901 950 ENSP00000361066/1-1424 L--PKQPMLG GNPRMMDSQE NYGSSMGGPN RNVTVTQTPS SGDWGLPNSK ENSBTAP00000009850/1-1408 L--PKQPMLG GNPRMMDNQE NYGSNMGGPN RNVTVNQAPS SGDWGLPSSK bmy_19762T0/1-1300 FCTPEDSVY- ---------- -----FGGPN RNVTVNQTPS SGDWGLPNSK BACU018318/1-1404 L--PKQPMLG GNPRMMDSQE NYGSNMGGPN RNVTVNQTPS SGDWGLPNSK ENSTTRP00000000019/1-1404 L--PKQPMLG GNPRMMDSQE NYGSNMGGPN RNVTVNQTPS SGDWGLPNSK 951 1000 ENSP00000361066/1-1424 AGRMEPMNSN SMGRPGGDYN TSLPRPALGG SIPTLPLRSN SIPGARPVL- ENSBTAP00000009850/1-1408 ASRMEPVNSN AMGRPGTDYN ASLPRPAMGG SMPAMPLRSN SIPGARPVMQ bmy_19762T0/1-1300 ASRMEPMNSN SMGRPGTDYN ASLPRPAMGG SMPAMPLRSS SIPGVRPVLQ BACU018318/1-1404 ASRMEPMNSN SMGRPGTDYN ASLPRPAVGG SVPAVPLRSG SIPGVRPVL- ENSTTRP00000000019/1-1404 ASRMEPMNSS SMGRPGTDYN AALPRPAMGG SMPAMPLRSS SIPGVRPML- 1001 1050 ENSP00000361066/1-1424 ------QQQQ QMLQMRPGEI PMGMGANPYG QAAASNQLGS WPDGMLSMEQ ENSBTAP00000009850/1-1408 Q-QQQQQPQP QMLQMRPGEI PMGMGVSPYG QAAPSNQPGS WPDGMLSMEQ bmy_19762T0/1-1300 QHHQQQQQQQ QMLQMRPGEI PMGMGVSPYG QAAPSNQPGS WPDGMLSMEQ BACU018318/1-1404 ----QHQQQQ QMLQMRPGEI PMGMGVSPYG QAAPSNQPGS WPDGMLSMEQ ENSTTRP00000000019/1-1404 ------QQQQ QMLQMRPGEI PMGMGVSPYG QAAPSNQPGS WPDGMLSMEQ 1051 1100 ENSP00000361066/1-1424 VSHGTQN--- ---------- ---------- ---------- ---------- ENSBTAP00000009850/1-1408 GPHGTQN--- ---------- ---------- ---------- ---------- bmy_19762T0/1-1300 GPHGTQNRVL KTPPSSSLQS PFLNLCYPLN VKGSSNCILV RKSTIEIESK BACU018318/1-1404 GPHGTQN--- ---------- ---------- ---------- ---------- ENSTTRP00000000019/1-1404 GPHGTQN--- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000361066/1-1424 ---RPLLRNS LDDLVGPPSN LEGQSDERAL LDQLHTLLSN TDATGLEEID ENSBTAP00000009850/1-1408 ---RPILRNS LDDLLGPPSN LEGQSDERAL LDQLHTLLSN TDATGLEEID bmy_19762T0/1-1300 SLFRPLLRNS LDDLLGPPSN LEGQSDERAL LDQLHTLLSN TDATGLEEID BACU018318/1-1404 ---RPLLRNS LDDLLGPPSN LEGQSDERAL LDQLHTLLSN TDATGLEEID ENSTTRP00000000019/1-1404 ---RPLLRNS LDDLLGPPSN LEGQSDERAL LDQLHTLLSN TDATGLEEID 1151 1200 ENSP00000361066/1-1424 RALGIPELVN QGQALEPKQD AFQGQEAAVM MDQKAGLYGQ TYPAQGPPMQ ENSBTAP00000009850/1-1408 RALGIPELVN QGQALEPKQD AFQGQEAAVM MEQKAALYGQ TYPGQGPPMQ bmy_19762T0/1-1300 RALGIPELVN QGQALESKQD AFQGQEAAVM MEQKAALYGQ TYPTQGPPVQ BACU018318/1-1404 RAL-XXXXVN QGQALESKQD AFQAQEAAVM MEQKAALYGQ TYPTQGPPVQ ENSTTRP00000000019/1-1404 RALGIPELVN QGQALESKQD AFQGQEAAVM MEQKAALYGQ TYPTQGPPMQ 1201 1250 ENSP00000361066/1-1424 GGFHLQGQSP SFNSMMNQMN QQGNFPLQGM HPRANIMRPR TNTPKQLRMQ ENSBTAP00000009850/1-1408 GGFNLQGQSP PFNSMMNQMN QQGSFPLQGM HPRANIMRPR TNTPKQLRMQ bmy_19762T0/1-1300 GGFSLPGQSP PFNSMMNQMN QQGGFPLQGM HPRANIMRPR TNTPKQLRMQ BACU018318/1-1404 GGFHLPGQSP PFNSMMNQMN QQGGFPLQGM HPRANIMRPR TNTPKQLRMQ ENSTTRP00000000019/1-1404 GAFNLPGQSP PFNSMMNQMN QQGGFPLQGM HPRANIMRPR TNTPKQLRMQ 1251 1300 ENSP00000361066/1-1424 LQQRLQGQQF LNQSRQALEL KMENPTAGGA AVMRPMMQPQ VSSQQGFLNA ENSBTAP00000009850/1-1408 LQQRLQGQQF LNQSRQALEM KMENPTAGGA TAMRPMMQP- ----QGFLNA bmy_19762T0/1-1300 LQQRLQGQQ- ---------- ---------- ---------- ----QGFLNA BACU018318/1-1404 LQQRLQGQQF LNQSRQALEM KMENPTAGGA AVMRPMMQPQ VNSQQGFLNA ENSTTRP00000000019/1-1404 LQQRLQGQQF LNQSRQALEM KMENPTAGGA AVMRPMMQPQ VNSQQGFLNA 1301 1350 ENSP00000361066/1-1424 QMVAQRSREL LSHHFRQQRV AMMMQQQQQQ QQQQQQQQQQ QQQQQQQQQQ ENSBTAP00000009850/1-1408 QMVAQRSREL LSHHFRQQRV AMMM------ ---------- ---QQQQQQQ bmy_19762T0/1-1300 QMVAQRSREL LSHHFRQQRV AMMM------ ---------- -----QQQQQ BACU018318/1-1404 QMVAQRSREL LSHHFRQQRV AMMM------ ---------- ----QQQQQQ ENSTTRP00000000019/1-1404 QMVAQRSREL LSHHFRQQRV AMMM------ ---------- -----QQQQQ 1351 1400 ENSP00000361066/1-1424 QQQTQAFSPP PNVTASPSMD GLLAGPTMPQ APPQQFPYQP NYGMGQQPDP ENSBTAP00000009850/1-1408 QQQTQAFSPP PNVTASPSMD GVLAGPAMPQ APPQQFPYPS NYGMGQQPDP bmy_19762T0/1-1300 QQQTQAFSPP PNVTASPTMD GVLAGPAMPQ APPQQFPYPP NYGKFVRDNN BACU018318/1-1404 QQQAQAFSPP PNVTASPTMD GVLAGPAMPQ APPQQFPYPP NYGMGQQPDP ENSTTRP00000000019/1-1404 QQQTQAFSPP PNVTASPTMD GVLAGPAMPQ APPQQFPYPP NYVMGQQPDP 1401 1450 ENSP00000361066/1-1424 AFGRVSSPPN AMMSSRMGPS QNPMMQHPQA ASIYQSSEMK GWPSGNLARN ENSBTAP00000009850/1-1408 AFGRVPSPPN AMMSSRMGPS QNPMMQHPQT APMYQSSEMK GWPSGTLARN bmy_19762T0/1-1300 VF-------- ---------- ---------- ---------- --PKVTFLR- BACU018318/1-1404 AFGRVPSPPN AMISSRMGPS QNPMMQHPQT APMYQSSEMK GWPSGTLTRN ENSTTRP00000000019/1-1404 AFGRGPSPPS AMISSRMGPS QNPMMQHPQT APMYQSSEMK GWPSGTLTRN 1451 1500 ENSP00000361066/1-1424 SSFSQQQFAH QGNPAVYSMV HMNGSSGHMG QMNMNPMPMS GMPMGPDQKY ENSBTAP00000009850/1-1408 STFPQQQFAH QGNPAAYSMV HMNGSGGPMG QMNMNAMPMA GMPMGPDQKY bmy_19762T0/1-1300 LSFSQQQFAH QGNPAAYSMV HMNGSSGPMG QMNMNSMPMT GMPMGPDQKY BACU018318/1-1404 SSFSQQQFAH QGNPAAYSMV HMNGSSGPMG QMNMNSMPMT GMPMGPDQ-- ENSTTRP00000000019/1-1404 SSFSQQQFAH QGNPAAYSMV HMNGSSGPMG QMNMNSMPMT GMPMGPDQKY 1501 1550 ENSP00000361066/1-1424 C ENSBTAP00000009850/1-1408 C bmy_19762T0/1-1300 C BACU018318/1-1404 - ENSTTRP00000000019/1-1404 C