KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:39:32 2014 Check: 00 .. Name: bmy_20871T0/1-882 Len: 1118 Check: 6195 Weight: 1.00 Name: BACU016161/1-1002 Len: 1118 Check: 2970 Weight: 1.00 Name: ENSTTRP00000013519/1-1020 Len: 1118 Check: 276 Weight: 1.00 Name: ENSBTAP00000009855/1-954 Len: 1118 Check: 7353 Weight: 1.00 // 1 50 bmy_20871T0/1-882 ---------- ---------- ---------- ---------S RSPDRAGPEA BACU016161/1-1002 ---------- ---------- ---------- MASFEPGLLF RSPTVLLVRA ENSTTRP00000013519/1-1020 VLFEVEEGGG EREEKEGREP ARRLCAEAPR TAHLAPPARS RARPLSSEDN ENSBTAP00000009855/1-954 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_20871T0/1-882 HSSLGGPPRP PWRPEPRLRX THPGGYVLLS RAR------- ---------- BACU016161/1-1002 FLDTLGSAIQ AW-------- ---------L RPH------- ---------- ENSTTRP00000013519/1-1020 LLTPGQGPDR HYQPIPDNLA SALGGLRELF PKRTPASCRR SGPGLAVTVP ENSBTAP00000009855/1-954 ---------- ---------- ---------- --M------- ---------- 101 150 bmy_20871T0/1-882 -----GRQAR PARCSSLLLT ---VVGPLTQ ----DNSPTS NSLEAGTDAT BACU016161/1-1002 -----EAEAR PLSSEDNLLT ----PGQ--- ----DNSPTS NSLEAGTDAT ENSTTRP00000013519/1-1020 LLPRMGGRWQ PSRWAWSLLA VALVAGGASS TGAVDNSPTS NSLEAGTDAT ENSBTAP00000009855/1-954 -----EGRWQ SSRWAWPLLA VALVTGSVSS TGT-TNSPTS NNLEVGPNTT 151 200 bmy_20871T0/1-882 AYWWGEWTKW TACSRSCGAG VTSQERHCLQ QRRTSVMGAG NRTCTGTSKR BACU016161/1-1002 AYWWGEWTKW TACSRSCGAG VTSQERHCLQ QRRTSVMGAG NRTCTGTSKR ENSTTRP00000013519/1-1020 AYWWGEWTKW TACSRSCGAG VASQERHCLQ QRRTSVMGTG NRTCTGTSKR ENSBTAP00000009855/1-954 AYWWGEWTKW TACSRSCGAG VTSQERHCLQ QRKTSVTGAG NRTCTGTSKR 201 250 bmy_20871T0/1-882 YQLCRVQECP PDGRSFREEQ CISFNSRVYN GRTHQWKPLY PD-------- BACU016161/1-1002 YQLCRVQECP PDGRSFREEQ CISFNSRVYN GRTHQWKPLY PGTVALGHPA ENSTTRP00000013519/1-1020 YQLCRVQECP PDGRSFREEQ CISFNSRVYN GRTHQWKPLY PD-------- ENSBTAP00000009855/1-954 YQLCRVQECP PDGRSFREEQ CISFNSRVYN GRRHQWKPLY PD-------- 251 300 bmy_20871T0/1-882 ---------- ---------- -----DYVHI SSKPCDLHCT TVDGQRQLMV BACU016161/1-1002 GNSLAGSVPD GHLLGTVGGN VLVQWTYVHI SSKPCDLHCT TADGQRQLMV ENSTTRP00000013519/1-1020 ---------- ---------- -----DYVHI SSKPCDLHCT TVDGQRQLMV ENSBTAP00000009855/1-954 ---------- ---------- -----DYVHI SSKPCDLHCT TVDGQRQLMV 301 350 bmy_20871T0/1-882 PAHDGTSCKL ADLRGVCVSG KCEPIGCDGV LFSTHTLDKC GVCQGDGSSC BACU016161/1-1002 PARDGTSCKL ADLRGVCVSG KCEPIGCDGV LFSTHTLDKC GVCQGDGSSC ENSTTRP00000013519/1-1020 PARDGTSCKL ADLRGVCVSG KCEPIGCDGV LFSTHTLDKC GVCQGDGSSC ENSBTAP00000009855/1-954 PARDGTSCKL ADLRGVCVSG KCEPIGCDGV LFSTHTLDKC GVCQGDGSSC 351 400 bmy_20871T0/1-882 THVTGNYRKG NAHL------ ---------- ---------- ----DEAGYY BACU016161/1-1002 THVTGNYRKG NAHLGYSLVT HIPAGARDIQ IVERKKSADV LALADEAGYY ENSTTRP00000013519/1-1020 THVTGNYRKG NTHLGYSLVT HIPAGARDIQ IVERKKSADV LALADEAGYY ENSBTAP00000009855/1-954 THVTGNYRKG NTHLGYSLVT HIPAGARDIQ IVERKKSADV LALADEAGYF 401 450 bmy_20871T0/1-882 FFNGNFKVDS PKNFNIAGTV VKYRRPMDVY ETGIEYIVAQ GPTNQGLNVM BACU016161/1-1002 FFNGNFKVDS PKNFNIAGTV VKYRRPMDVY ETGIEYIVAQ GPTNQGLNVM ENSTTRP00000013519/1-1020 FFNGNFKVDS PKNFNIAGTV VKYRRPMDVY ETGIEYIVAQ GPTNQGLNVM ENSBTAP00000009855/1-954 FFNGNFKVDS PKNFNIAGTV VKYRRPMDVY ETGIEYIVAQ GPTNQGLNVM 451 500 bmy_20871T0/1-882 VWNQNGKSPS ITFEYTLLQP PHAHRIQPIY YSFSEPASDS AESQELDGAG BACU016161/1-1002 VWNQNGKSPS ITFEYTLLQP PHAHRIQPIY YSFSEPASDS AESQELDGAG ENSTTRP00000013519/1-1020 VWNQNGKSPS ITFEYTLLQP PHAHRIQPVY YSFSEPTADS TESQELDGAG ENSBTAP00000009855/1-954 VWNQNGKSPS ITFEYTLLQP PHTHRLQPIY YSFSDPTSDS AESQELDGAG 501 550 bmy_20871T0/1-882 LVGFLQHNGS LYGQASSEQL GLDNRLFGHR GPGIELGLSK GQETNEVCAQ BACU016161/1-1002 LVGFLQHNGS LYGQASSEQL GLDNRLFGHR GPGIELGLSK GQETNEVCAQ ENSTTRP00000013519/1-1020 LVGFLQHNGS LYGQASSEQL GLDNRLFGHR GPGIELGLSK GQETNEVCAQ ENSBTAP00000009855/1-954 LAGFLQHNAS LFGQASSERL GLDNRLFGHR GPGIELGLSR GQESNEVCAQ 551 600 bmy_20871T0/1-882 ASGRACEGPP RGKGFRGQPL PPNEGAPEVE PPISPIDGNA TGMALAGDQD BACU016161/1-1002 ASGRACEGPP RGKGFRGQPL PPHEGAPEVE PPISPVDGNA TGMALAGDQD ENSTTRP00000013519/1-1020 ASGRACEGPP RGKGFR---- ---------- ------DGNA TGTAHAGHQD ENSBTAP00000009855/1-954 ASGRACEGPP RGKGFR---- ---------- ------DGNA TLTALVGDPD 601 650 bmy_20871T0/1-882 EQEADARFTS QELLSANAIS DQLLDTGSDS KELPLNETSN SIFAQGAPRG BACU016161/1-1002 DQEADARFTS QELLSANAIS DQLLDTGSDS KELPLNETSN SIFAQGAPRG ENSTTRP00000013519/1-1020 DQETGAHFTS QELLSANAIS DQLLDTDSDS REVPLNETSN SIFAQGAPRG ENSBTAP00000009855/1-954 DREADARFAS QELLSANAIS DQLLGAGSDS RELSLNETVN SIFSQGAPRG 651 700 bmy_20871T0/1-882 SPADSLYVDY EENEGAGAYL LNGSYLELSS DRVANTSSEA PFPNASASLP BACU016161/1-1002 SPADSLYVDY EENEGAGAYL LNGSYLELSS DRVANTSSEA PFPNASASLP ENSTTRP00000013519/1-1020 SPADSLYVEY EENEGAGAYL LNGSYLELST DRVANTSSEA PFPNASASLP ENSBTAP00000009855/1-954 SPAESLYLDY EESEGAGAYL LNGSYLELSS DRLANTSSEA PFPNASASLP 701 750 bmy_20871T0/1-882 ALAGNRTQKA RTRPKTRKQG VSPADMYRWK LSSHEPCSST CTTG---THP BACU016161/1-1002 ALAGNRTQKA RTRPKTRKQG VSPADMYRWK LSSHEPCSST CTTGVMSTYA ENSTTRP00000013519/1-1020 ALAGNRTQKA RTRPKTRKHG VSPADMYRWK LSSHEPCSST CTTGVMSTYA ENSBTAP00000009855/1-954 ALAGNRTQKA RTRPKSRKQG VSPADMYRWK LSSHEPCSST CTTGVLSTYA 751 800 bmy_20871T0/1-882 LC-------- ---------- ---------- ---------S DFGPCASS-- BACU016161/1-1002 MCVRYDGIEV DDSYCDALTR PEPVQEFCAG RECQPRWETS SWSECSRTCG ENSTTRP00000013519/1-1020 MCVRYDGIEV DDSYCDALTR PEPVQEFCAG RECQPRWETS SWSECSRTCG ENSBTAP00000009855/1-954 MCVRYDGIEV DDSYCDALTR PEPVQEFCAG RECQPRWETS SWSECSRTCG 801 850 bmy_20871T0/1-882 ---------- ---------- ---------- ---------- ---------- BACU016161/1-1002 EGYQFRIVRC WKMLSPGFDS SVYSDLCEAA EAVRPEERKT CRNPACGPQW ENSTTRP00000013519/1-1020 EGYQFRIVRC WKMLSPGFDS SVYSDLCEAA EAVRPEERKT CRNPACGPQW ENSBTAP00000009855/1-954 EGYQFRIVRC WKMLSPGFDS SVYSDLCEAA EAVRPEERKT CRGPACGPQW 851 900 bmy_20871T0/1-882 ---------- ---CTAKCGE RSVVTRDIRC SEDETLCDPN TRPVGEKDCT BACU016161/1-1002 EIRGPALTPA SPQCTAKCGE RSVVTRDIRC SEDETLCDPN TRPVGEKDCT ENSTTRP00000013519/1-1020 EMSEWSE--- ---CTAKCGE RSVVTRDIRC SEDETLCDPN TRPVGEKDCT ENSBTAP00000009855/1-954 EMSQWSE--- ---CTAKCGE RSVVTRDIRC SEDEKLCDPN TRPVGEKDCT 901 950 bmy_20871T0/1-882 GPPCDRQWTV SDWGPCSGSC GQGRMIRHVY CKTSDGRVVP ESQCQMETKP BACU016161/1-1002 GPPCDRQWTV SDWGPCSGSC GQGRMIRHVY CKTSDGRVVP ESQCQMETKP ENSTTRP00000013519/1-1020 GPPCDRQWTV SDWGPCSGSC GQGRMIRHVY CKTSDGRVVP ESQCQMEAKP ENSBTAP00000009855/1-954 GPPCDRQWTV SDWGPCSGSC GQGRMIRHVY CKTSDGRVVP ESQCQMETKP 951 1000 bmy_20871T0/1-882 LAIHPCGDKN CPAHWLAQDW ERCNTTCGRG VKKRLVLCME LANGKPQTRN BACU016161/1-1002 LAIHPCGDKN CPAHWLAQDW ERCNTTCGRG VKKRLVLCME LANGKPQTRN ENSTTRP00000013519/1-1020 LAIHPCGDKN CPAHWLAQDW ERCNTTCGRG VKKRLVLCME LANGKPQTRN ENSBTAP00000009855/1-954 LAIHPCGDKN CPAHWLAQDW ERCNTTCGRG VKKRLVLCME LANGKPQTRS 1001 1050 bmy_20871T0/1-882 GPECGLAKKP PEESTCFERP CFKWYTSPWS ECTKTCGVGV RMRDVKCYQG BACU016161/1-1002 GPECGLAKKP PEESTCFERP CFKWYTSPWS ECTKTCGVGV RMRDVKCYQG ENSTTRP00000013519/1-1020 GPECGLAKKP PEESTCFERP CFKWYTSPWS ECTKTCGVGV RMRDVKCYQG ENSBTAP00000009855/1-954 GPECGLAKKP PEESTCFERP CFKWYTSPWS ECTKTCGVGV RMRDVKCYQG 1051 1100 bmy_20871T0/1-882 TDIVRGCDPL VKPVGRQACD LQPCPTEPPD DSCQDQPGTN CALAIKVNLC BACU016161/1-1002 TDIVRGCDPL VKPVGRQACD LQPCPTEPPG EG-------- ---------- ENSTTRP00000013519/1-1020 TDIVRGCDPL VKPVGRQACD LQPCPTEPP- ---------- ---------- ENSBTAP00000009855/1-954 TDIVRGCDPL VKPVGRQACD LQPCPTEPPD DSCQDQPGTN CALAIKVNLC 1101 1150 bmy_20871T0/1-882 GHWYYSKACC RSCRPPHS BACU016161/1-1002 ---------- -------- ENSTTRP00000013519/1-1020 ---------- -------- ENSBTAP00000009855/1-954 GHWYYSKACC HSCRPPPS