KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:39:35 2014 Check: 00 .. Name: ENSTTRP00000005536/1-1764 Len: 1897 Check: 5040 Weight: 1.00 Name: ENSP00000401513/1-1775 Len: 1897 Check: 1936 Weight: 1.00 Name: bmy_10926T0/1-1829 Len: 1897 Check: 1777 Weight: 1.00 Name: ENSBTAP00000009875/1-1769 Len: 1897 Check: 7082 Weight: 1.00 // 1 50 ENSTTRP00000005536/1-1764 MALSLWALVL ------LLSC GVTLAPTGPQ SLDPSLSLLK SWLSVLDQAP ENSP00000401513/1-1775 MALSLWPLLL LLLLLLLLSF AVTLAPTGPH SLDPGLSFLK SLLSTLDQAP bmy_10926T0/1-1829 ---------- ---------- --TLVPTGPQ SLDPGLSLLK SLLSVLDQAP ENSBTAP00000009875/1-1769 MALSLRPLLL LSCAVSLLT- -VTLVPTGSQ SLDSGLSLLK SALSALDQAP 51 100 ENSTTRP00000005536/1-1764 QGSLSHSRFS AFLANISSS- EPGRMGEGPV GEPPPLQPPA LRLHDFLVTL ENSP00000401513/1-1775 QGSLSRSRFF TFLANISSSF EPGRMGEGPV GEPPPLQPPA LRLHDFLVTL bmy_10926T0/1-1829 QGSLSLSRFS AFLANISSSF EPGRMGEGPV GEPPPLQPPA LRLHDFLVTL ENSBTAP00000009875/1-1769 QGSFSRSRFS AFLANISSSF EPGRMGEGPV GEPPPLQPPA LRLHDFLVTL 101 150 ENSTTRP00000005536/1-1764 RGSPDWEPML GLLGDVLALL GHEQTPRDFL GHQAGVLSGL AEVLLGALVP ENSP00000401513/1-1775 RGSPDWEPML GLLGDMLALL GQEQTPRDFL VHQAGVLGGL VEVLLGALVP bmy_10926T0/1-1829 RGSPDWEPML GLLGDVLALL GQEQTPRDFL GHQAGVLRGL AEVLLGALVP ENSBTAP00000009875/1-1769 RGSPDWEPML GLLGDVLALL GQEQTPRDFL GHQAGVLSGL AEVLLGALVP 151 200 ENSTTRP00000005536/1-1764 GGPPSPTRPP CTRDGPSDCV LAADWLPSLL LLLEGTRWQA LVQVQPSVDL ENSP00000401513/1-1775 GGPPTPTRPP CTRDGPSDCV LAADWLPSLL LLLEGTRWQA LVQVQPSVDP bmy_10926T0/1-1829 GGPPNPTRPP CTRDGPSDCV LAADWLPSLL LLLEGTRWQA LVQXQPSVDP ENSBTAP00000009875/1-1769 GGPPIPTRPP CTRDGPSDCV LAADWLPSLL LLLEGTRWQA LVRVQPSVDP 201 250 ENSTTRP00000005536/1-1764 ANATGLDGRE PAPHLLQGLL ALLTPVGELG SEEALWGGLL RTVGAPLYAT ENSP00000401513/1-1775 TNATGLDGRE AAPHFLQGLL GLLTPTGELG SKEALWGGLL RTVGAPLYAA bmy_10926T0/1-1829 ANATGLDGRE PAPHLLQGLL ALLTPVGELG SEEALWGGLL RTVGAPLYAT ENSBTAP00000009875/1-1769 ANATGLDGRE PAPHLLQGLL GLLAPVGELG SEEALWGGLL RTVGAPLYAT 251 300 ENSTTRP00000005536/1-1764 FQEGLLRVTD SLQDEVFSIL GQPEPDVNGQ CQGGNLQQLL LWGIRHNLSW ENSP00000401513/1-1775 FQEGLLRVTH SLQDEVFSIL GQPEPDTNGQ CQGGNLQQLL LWGVRHNLSW bmy_10926T0/1-1829 FQEGLLRVTD SLQDEVFSIL GQPEPDVNGQ CQGGNLQQLL L-GIRHNLSW ENSBTAP00000009875/1-1769 FQEGLLRITD SLQDEVFSIL GQPEPDANGQ CQGGNLQQLL LWGIRHNLSW 301 350 ENSTTRP00000005536/1-1764 DVRALGFLSG SPPPPPALLQ CLSTAVPLPR TSQPSAHISP RQRRAISLEA ENSP00000401513/1-1775 DVQALGFLSG SPPPPPALLH CLSTGVPLPR ASQPSAHISP RQRRAITVEA bmy_10926T0/1-1829 DVQALGFLSG SPPPPPALLH CLSTAVPLPR TSQPSANISP RQRRAISVEA ENSBTAP00000009875/1-1769 DVRALGFLSG SPPPPPALLH CLSTGVPLPR TSQPSAYISP RQRRAISVEA 351 400 ENSTTRP00000005536/1-1764 LCENSAGPAP HYSISNFTLY VICQHIKPVS PQPPPSTAAI CQTAVWYAVS ENSP00000401513/1-1775 LCENHLGPAP PYSISNFSIH LLCQHTKPAT PQPHPSTTAI CQTAVWYAVS bmy_10926T0/1-1829 LCENSAGPAP PYSISNFSLH VICQHIKPVA PQPPPSTAAI CQTAVWYAVS ENSBTAP00000009875/1-1769 LCENLSGPAP PYSISNFSIH LLCQHAKPVT PQPPPSTAAI CQTAVWYAVS 401 450 ENSTTRP00000005536/1-1764 WAPGAQGWLQ ACHDQFPEEF LEAICSDLPF STLSFPNRRL VKRLCAGLLP ENSP00000401513/1-1775 WAPGAQGWLQ ACHDQFPDEF LDAICSNLSF SALSGSNRRL VKRLCAGLLP bmy_10926T0/1-1829 WAPGAQGWLQ ACHDQFPEEF LEAICSDLSF STLSGSNRRL VKRLCAGLLP ENSBTAP00000009875/1-1769 WAPGAQGWLQ ACHDQFPEQF LDAICGNLSF STLSGPNRRL VKRLCAGLLP 451 500 ENSTTRP00000005536/1-1764 PPTSCPEGLP PVPVTPEIFW GCFLENETLW AERLCREASL QAVPPSNQAW ENSP00000401513/1-1775 PPTSCPEGLP PVPLTPDIFW GCFLENETLW AERLCGEASL QAVPPSNQAW bmy_10926T0/1-1829 PPTSCPEGLP PVPLTPEIFW GCFLENETLW AERLCGEASL QAVPPSNQAW ENSBTAP00000009875/1-1769 PPTSCPEGLP PVPLTPEIFW GCFLENETLW AERLCGEASL QAVPPSNQAW 501 550 ENSTTRP00000005536/1-1764 VQHVCQGPTP DVTASPPCHI GPCGERCPDG GSFLMMVCAN DTMYEALVPS ENSP00000401513/1-1775 VQHVCQGPTP DVTASPPCHI GPCGERCPDG GSFLVMVCAN DTMYEVLVPF bmy_10926T0/1-1829 VQHVCQGPTP DVTASPPCHI GPCGERCPDG GSFLMMVCAN DTMYEALVPS ENSBTAP00000009875/1-1769 VQHVCQGPTP DVTAFPPCYI GPCGERCPDG GSFLLMVCAN DTMYEALVPS 551 600 ENSTTRP00000005536/1-1764 WPWLAGQCRI SRGGNDTCFL EGLLGPLLPS QPPLGPSPLC LAPGPFLLGM ENSP00000401513/1-1775 WPWLAGQCRI SRGGNDTCFL EGLLGPLLPS LPPLGPSPLC LTPGPFLLGM bmy_10926T0/1-1829 WPWLAGQCRI SRGGNDTCFL EGLLGPLLPS LPPLGPSPLC LAPGPFLLGM ENSBTAP00000009875/1-1769 WPWLAGQCRI SRGGNDTCFL EGLLGPLLPS LPPLGPSPLC LAPGPFLLGM 601 650 ENSTTRP00000005536/1-1764 LSQLPRCQSS VPAPAHPTRL HYLLRLLTFL LGPGAGGKEA QGMLGQALML ENSP00000401513/1-1775 LSQLPRCQSS VPALAHPTRL HYLLRLLTFL LGPGAGGAEA QGMLGRALLL bmy_10926T0/1-1829 LSQLPRCQSS VPAPAHPTRL HYLLRLLTFL LGPGAGGNEA QGMLGQALML ENSBTAP00000009875/1-1769 LSQLPRCQSS VPALAHPTRL HYLLRLLTFL LGPGAGGNEA QGMLGQALML 651 700 ENSTTRP00000005536/1-1764 SSLPDNCSFW DAFRPEGRRS VLRTVGEYLE Q-EEQPDPLD FDPTDSSSSG ENSP00000401513/1-1775 SSLPDNCSFW DAFRPEGRRS VLRTIGEYLE QDEEQPTPSG FEPTVNPSSG bmy_10926T0/1-1829 SSLPDNCSFW DAFRPEGRRS VLRTVGEYLE Q-EEQPTPLD FDSTASSSSG ENSBTAP00000009875/1-1769 SSLPDNCSFW DAFRPEGRRS VLRTVGEFLE Q-EEQPTP-G FNPTDSSSPA 701 750 ENSTTRP00000005536/1-1764 VSKMELLACF SPVLWDLLQR EKSXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000401513/1-1775 ISKMELLACF SPVLWDLLQR EKSVWALQIL VQAYLHMPPE NLQQLVLSAE bmy_10926T0/1-1829 LSKMELLACF SPVLWDLLQR EKSVWALQIL VQAYLHMPPE NLQQLVLSAE ENSBTAP00000009875/1-1769 LSKMELLACF SPVLWDLLQR EKSVWALQIL VQAYLHMPPE NLQQLVLSAE 751 800 ENSTTRP00000005536/1-1764 XXXXXXXXXX XXXXXXXXXX ---------- ---------- ---------- ENSP00000401513/1-1775 REAAQGFLTL MLQGKLQGKL ---------- ---------- ---------- bmy_10926T0/1-1829 SEAAQGFLTL MHRSWAQLQV GTEREGNEGG GGNLGIKSTW NQVGSGLAPA ENSBTAP00000009875/1-1769 REAAQGFLTL MHRSWAQL-- ---------- ---------- ---------- 801 850 ENSTTRP00000005536/1-1764 ---------- ---------- -----XXXXX XXXXXXXXXX XXXQRYPRLN ENSP00000401513/1-1775 ---------- ---------- -----QVPPS EEQALGRLTA LLLQRYPRLT bmy_10926T0/1-1829 EGGTQQGRWP EEWASPAPAF IPVPPQVPPS EEQALGRLTA LLLQRYPRLT ENSBTAP00000009875/1-1769 ---------- ---------- -----QVPPS EEQALGRLTA LLLQRYPRLT 851 900 ENSTTRP00000005536/1-1764 S-LFIDLSSL IP-LAVSDMM RFPPSLLAND SVLAAIRNYS PEMRPEQKEA ENSP00000401513/1-1775 SQLFIDLSPL IPFLAVSDLM RFPPSLLAND SVLAAIRDYS PGMRPEQKEA bmy_10926T0/1-1829 SQLFIDLSPL IPFLAVSDLM RFPPSLLAND SVLAAIRNYS PGMRPEQKEA ENSBTAP00000009875/1-1769 SQLFIDLSPL IPFLAVSDLM RFPPSLLAND SVLAAIRDYS PGMRPEQKEA 901 950 ENSTTRP00000005536/1-1764 LARRLLAPEL FGEVPAWPQE LLWAALPLLP HLPLENFLQL SPHQIQALED ENSP00000401513/1-1775 LAKRLLAPEL FGEVPAWPQE LLWAVLPLLP HLPLENFLQL SPHQIQALED bmy_10926T0/1-1829 LARRLLAPEL FGEVPAWPQE LLWAALPLLP HLPLENFLQL SPHQIQALED ENSBTAP00000009875/1-1769 LARRLLAPEL FGEVPAWPQE LLWAALPLLP HLPLENFLQL SPHQIQALED 951 1000 ENSTTRP00000005536/1-1764 SWPAAGLGPG HARHVLRSLV NQSVQDGEEQ VRRLGPLACF LSPEELQSLV ENSP00000401513/1-1775 SWPAAGLGPG HARHVLRSLV NQSVQDGEEQ VRRLGPLACF LSPEELQSLV bmy_10926T0/1-1829 SWPAAGLGPG HARHVLRSLV NQSVQDGEEQ VRRLGPLACF LSPEELQSLV ENSBTAP00000009875/1-1769 SWPAAGLGPG HARHVLRSLV NQSVQDGEEQ VRRLGPLACF LTPEELQSLV 1001 1050 ENSTTRP00000005536/1-1764 PLNDPMGPVE QGLLECAANG TLSPQGRVAY ELLGVLRSSG GTVLSPQELR ENSP00000401513/1-1775 PLSDPTGPVE RGLLECAANG TLSPEGRVAY ELLGVLRSSG GAVLSPRELR bmy_10926T0/1-1829 PLNDPMGPVE RGLLECAANG TLSPQGRVAY ELLGVLRSSG GTVLSPRELR ENSBTAP00000009875/1-1769 PLNDPMGPVE RGLLECAANG TLSPQGRVAY ELLGVLRSSG GAVLSPRELR 1051 1100 ENSTTRP00000005536/1-1764 VWTPLFPQLG LRFLQELSEP QLRAMLPELQ GTSVTPAQAA LLLGRLLPRR ENSP00000401513/1-1775 VWAPLFSQLG LRFLQELSEP QLRAMLPVLQ GTSVTPAQAV LLLGRLLPRH bmy_10926T0/1-1829 VWAPLFPQLG LRFLQELSEP QLRAMLPVLQ GTSVTPAQAV LLLGRLLPRH ENSBTAP00000009875/1-1769 VWAPLFPQLG LRFLQELSEP QLRAMLPALQ GARVTPAQAV LLLERLLPRR 1101 1150 ENSTTRP00000005536/1-1764 DLSL-ELCSL HPLLPXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000401513/1-1775 DLSLEELCSL HLLLPGLSPQ TLQAIPRRVL VGACSCLAPE LSRLSACQTA bmy_10926T0/1-1829 DLSLEELCSL HPLLPGLSSQ TFQAIPRRVL VGACSCLAPE LSRLSACQTA ENSBTAP00000009875/1-1769 DLSLEELCSL HPLLPGLSSQ TLQAIPRRVL LRACPCLAPE LARLSACQTA 1151 1200 ENSTTRP00000005536/1-1764 XXXXXXX--- ---------- ---------- ---------- ---------- ENSP00000401513/1-1775 ALLQTFR--- ---------- ---------- ---------- ---------- bmy_10926T0/1-1829 ALLQTFRQGG WPIRDEGSGW EEGIFPVPRE GPSNLTTFTH THTHTHTYTQ ENSBTAP00000009875/1-1769 ALLQTFR--- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000005536/1-1764 -----VKDGV KNMGATGASA AVCIPG-QPI PTTWPDCLLP LLPLKLLQLD ENSP00000401513/1-1775 -----VKDGV KNMGTTGAGP AVCIPG-QPI PTTWPDCLLP LLPLKLLQLD bmy_10926T0/1-1829 PILMQVKDGV KNMGATGASA AVCIPGQQPI PTTWPDCLLP LLPLKLLQLE ENSBTAP00000009875/1-1769 -----VKDGV KNTGAAGAGA AVCIPG-QPI PTIWPDCLLP LLPLKLLQLD 1251 1300 ENSTTRP00000005536/1-1764 SAALLANRRR YRELPWSEQQ AQFLWKKMQV PTNLTLRDLQ VLGTLAGGMS ENSP00000401513/1-1775 SLALLANRRR YWELPWSEQQ AQFLWKKMQV PTNLTLRNLQ ALGTLAGGMS bmy_10926T0/1-1829 SAALLADRRH YRELPW---- ---------- ---------- ALGTLAGGMS ENSBTAP00000009875/1-1769 AAALLADRRR YRDLPWSEQQ AQFLWEKMQV PTNLTLRNLQ ALGTLAGGMS 1301 1350 ENSTTRP00000005536/1-1764 CEFLQQINSM ADFLEVVHMI YQLPTGVRGS LRTCIWAELQ RRMTMPEPEL ENSP00000401513/1-1775 CEFLQQINSM VDFLEVVHMI YQLPTRVRGS LRACIWAELQ RRMAMPEPEW bmy_10926T0/1-1829 CEFLQQINLM ADFLEVVHMI YQLSTGVRGS LRTCIWAELQ RRMAMPEPEL ENSBTAP00000009875/1-1769 CEFLQQINWM ADFLEVVHMI YQLPTGVRGS LRTCIWAELQ RRMAMPEPEL 1351 1400 ENSTTRP00000005536/1-1764 ATLGPGLSGL DTKLLLDLPI RLMDRLSSES IMLVVELVRG TPEQLLELTP ENSP00000401513/1-1775 TTVGPELNGL DSKLLLDLPI QLMDRLSNES IMLVVELVQR APEQLLALTP bmy_10926T0/1-1829 ATLGPELSGL DTKLLLDLPV QLMDRLSSES IMLVVELVRG TPEQLLALTP ENSBTAP00000009875/1-1769 ATLGPELSGL DTKLLLDLPV QLMDRLSNES IMLVVELVRG APEQLLALTP 1401 1450 ENSTTRP00000005536/1-1764 PHQAALAERA LENL------ ---------- --APKETTVS REVLETLGPL ENSP00000401513/1-1775 LHQAALAERA LQNL------ ---------- --APKETPVS GEVLETLGPL bmy_10926T0/1-1829 LHRAALAERA LQNLTGPLSQ RCIVPRPDAP LQAPKETTVS REVLETLGPL ENSBTAP00000009875/1-1769 LHRAALAERA LQNL------ ---------- --APKETTVS REVLETLGPL 1451 1500 ENSTTRP00000005536/1-1764 VGFLGIESTR RIPLQILLAH LSQLQGICLG EPFATELGWL LLQEPVLGKP ENSP00000401513/1-1775 VGFLGTESTR QIPLQILLSH LSQLQGFCLG ETFATELGWL LLQESVLGKP bmy_10926T0/1-1829 VGFLGIESTR RIPLQILLAH LSQLQGICLG EPFATELGWL LLQEPVLGKP ENSBTAP00000009875/1-1769 VGFLGIESTR RIPLQILLAH LSQLQGFCLG GLFATELGWL LLQEPVLGKP 1501 1550 ENSTTRP00000005536/1-1764 ELWSQDEVEQ AGRLVFTLSP EAISLIPREA LGPETLERLL EKQQSWEQSR ENSP00000401513/1-1775 ELWSQDEVEQ AGRLVFTLST EAISLIPREA LGPETLERLL EKQQSWEQSR bmy_10926T0/1-1829 ELWSQDEVEQ AGRLVFTLSP EAISLIPREA LGPETLERLL EKQQSWEQSR ENSBTAP00000009875/1-1769 ELWSQDEVEQ AGRLIFTLSP EAISLIPREA LGPETLERLL EKQQSWEQSR 1551 1600 ENSTTRP00000005536/1-1764 AGQLCAGPQL TAKKAALVAG FVRPTAEDLP EPVPNCADVR GTFPSAWSAT ENSP00000401513/1-1775 VGQLCREPQL AAKKAALVAG VVRPAAEDLP EPVPNCADVR GTFPAAWSAT bmy_10926T0/1-1829 AGQLCAGPQL TAKKAALVAG VVRPTAEDLP EPVPNCADVR GTFPSAWSAT ENSBTAP00000009875/1-1769 AGQLCAGPQL APKKAALVAG LVRPAAENLP EPVPNCADVR GTFPSAWSAA 1601 1650 ENSTTRP00000005536/1-1764 QIAEMELLDF EDCLALFAED PGLGPEELRA AMGKAKQLWG PPGGFRPEQI ENSP00000401513/1-1775 QIAEMELSDF EDCLTLFAGD PGLGPEELRA AMGKAKQLWG PPRGFRPEQI bmy_10926T0/1-1829 QIAEMELLDF EDCLALFAGD PGLGPEELRA AMGKAKQ--- ---------- ENSBTAP00000009875/1-1769 QIADMELLDF EDCLALFAGD PGLGPEKLRA AMGKAKQLWG PPQGFRPEQI 1651 1700 ENSTTRP00000005536/1-1764 LQLGRLLIGL GERELQELNL VDWGVLSTLG QIDGWSSIQL RVVVSSFLKQ ENSP00000401513/1-1775 LQLGRLLIGL GDRELQELIL VDWGVLSTLG QIDGWSTTQL RIVVSSFLRQ bmy_10926T0/1-1829 -------VSL GERELQELSL VDWGVLSTLG QIDGWSSIQL RVVVSSFLKQ ENSBTAP00000009875/1-1769 LQLGRLLIGL GERELQELSL VDWGVLSTLG QIDGWSSSQL RVVVSSFLRQ 1701 1750 ENSTTRP00000005536/1-1764 SGRHVSHLDF LHLTALGYTL CGLRPEELQY INSWEFSQAA LFLGNLHLPC ENSP00000401513/1-1775 SGRHVSHLDF VHLTALGYTL CGLRPEELQH ISSWEFSQAA LFLGTLHLQC bmy_10926T0/1-1829 SGRHVSHLDF LHLTALGYTL CGLWPEELQH INSWEFSQAA LFLGNLHLPC ENSBTAP00000009875/1-1769 SGRHVSHLDF LHLTALGYAL CGLRPEELQH ISSWEFSQAA LFLGNLHLPC 1751 1800 ENSTTRP00000005536/1-1764 SEEQLEVLAQ LLVLPGGFGP VSNWGPEIFT EIGTIAAGIP DLALSALLRG ENSP00000401513/1-1775 SEEQLEVLAH LLVLPGGFGP ISNWGPEIFT EIGTIAAGIP DLALSALLRG bmy_10926T0/1-1829 SEEQLEVLAQ LLVLPGGFGP VSNWGPEIFT EIGTIAAGIP DLALSALLRG ENSBTAP00000009875/1-1769 SEEQLEILAQ LLVLPGGFGP VSNWGPEIFT EIGTIAAGIP DLALSALLRG 1801 1850 ENSTTRP00000005536/1-1764 QIQGLTPLAI SVIPPPKFAV VFSPTQLSSL TSVQAVAVTP EQMAFLSPEQ ENSP00000401513/1-1775 QIQGVTPLAI SVIPPPKFAV VFSPIQLSSL TSAQAVAVTP EQMAFLSPEQ bmy_10926T0/1-1829 QIQGLTPLAI SVIPPPKFAV VFSPTQLSSL TSVQAVAVTP EQMAFLSPEQ ENSBTAP00000009875/1-1769 QIQGLTPLAI SVIPAPKFAV VFSPTQLSSL TSVQAVAVTP EQMAFLSPEQ 1851 1900 ENSTTRP00000005536/1-1764 RRAVAWAQYE GMETPEQQGR STAWGLQDWS QPSWALALTI YFLGNLL ENSP00000401513/1-1775 RRAVAWAQHE GKESPEQQGR STAWGLQDWS RPSWSLVLTI SFLGHLL bmy_10926T0/1-1829 RRAVAWAQYE GKETPEQQGR STAWGLQDWS QPSWALALTI YFLGNLL ENSBTAP00000009875/1-1769 RRAVAWAQYE GMESLEQEGR STAWGLQDWS QPSWALALTI CFLGNLL