KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:35 2014 Check: 00 .. Name: ENSBTAP00000009878/1-275 Len: 275 Check: 8524 Weight: 1.00 Name: BACU009080/1-275 Len: 275 Check: 8524 Weight: 1.00 Name: ENSP00000375647/1-275 Len: 275 Check: 8524 Weight: 1.00 Name: ENSTTRP00000010380/1-273 Len: 275 Check: 8527 Weight: 1.00 Name: bmy_21391T0/1-141 Len: 275 Check: 2822 Weight: 1.00 // 1 50 ENSBTAP00000009878/1-275 MSHCSSRALT LLSSVFGACG LLLVGIAVST DYWLYMEEGT VLPQNQTTEV BACU009080/1-275 MSHCSSRALT LLSSVFGACG LLLVGIAVST DYWLYMEEGT VLPQNQTTEV ENSP00000375647/1-275 MSHCSSRALT LLSSVFGACG LLLVGIAVST DYWLYMEEGT VLPQNQTTEV ENSTTRP00000010380/1-273 MSHCSSRALT LLSSVFGACG LLLVGIAVST DYWLYMEEGT VLPQNQTTEV bmy_21391T0/1-141 MSHCSSRALT LLSSVFGACG LLLVGIAVST DYWLYMEEGT VLPQNQTTEV 51 100 ENSBTAP00000009878/1-275 KMALHAGLWR VCFFAGREKG RCVASEYFLE PEINLVTENT ENILKTVRTA BACU009080/1-275 KMALHAGLWR VCFFAGREKG RCVASEYFLE PEINLVTENT ENILKTVRTA ENSP00000375647/1-275 KMALHAGLWR VCFFAGREKG RCVASEYFLE PEINLVTENT ENILKTVRTA ENSTTRP00000010380/1-273 KMALHAGLWR VCFFAGREKG RCVASEYFLE PEINLVTENT ENILKTVRTA bmy_21391T0/1-141 KMALHAGLWR VCFFAGREKG RCVASEYFLE PEINLVTENT ENILKTVRTA 101 150 ENSBTAP00000009878/1-275 TPFPMVSLFL VFTAFVISNI GHIRPQRTIL AFVSGIFFIL SGLSLVVGLV BACU009080/1-275 TPFPMVSLFL VFTAFVISNI GHIRPQRTIL AFVSGIFFIL SGLSLVVGLV ENSP00000375647/1-275 TPFPMVSLFL VFTAFVISNI GHIRPQRTIL AFVSGIFFIL SGLSLVVGLV ENSTTRP00000010380/1-273 TPFPMVSLFL VFTAFVISNI GHIRPQRTIL AFVSGIFFIL SXXXXXXXXX bmy_21391T0/1-141 TPFPMVSLFL VFTAFVISNI GHIRPQRTIL AFVSGIFFIL S--------- 151 200 ENSBTAP00000009878/1-275 LYISSINDEV MNRPSSSEQY FHYRYGWSFA FAASSFLLKE GAGVMSVYLF BACU009080/1-275 LYISSINDEV MNRPSSSEQY FHYRYGWSFA FAASSFLLKE GAGVMSVYLF ENSP00000375647/1-275 LYISSINDEV MNRPSSSEQY FHYRYGWSFA FAASSFLLKE GAGVMSVYLF ENSTTRP00000010380/1-273 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_21391T0/1-141 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000009878/1-275 TKRYAEEEMY RPHPAFYRPR LSDCSDYSGQ FLQPEAWRRG RSPSDISSDV BACU009080/1-275 TKRYAEEEMY RPHPAFYRPR LSDCSDYSGQ FLQPEAWRRG RSPSDISSDV ENSP00000375647/1-275 TKRYAEEEMY RPHPAFYRPR LSDCSDYSGQ FLQPEAWRRG RSPSDISSDV ENSTTRP00000010380/1-273 XXXXXXEEMF VPHPA--RPD SGDGSDYSGQ FLQAEAWRRG PSPSDISSDV bmy_21391T0/1-141 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000009878/1-275 SIQMTQNYPP AIKYPDHLHI STSPC BACU009080/1-275 SIQMTQNYPP AIKYPDHLHI STSPC ENSP00000375647/1-275 SIQMTQNYPP AIKYPDHLHI STSPC ENSTTRP00000010380/1-273 SIQRTQKYPP AIKYPDHLHI STSPC bmy_21391T0/1-141 ---------- ---------- -----