KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:39:39 2014 Check: 00 .. Name: ENSP00000438465/1-289 Len: 485 Check: 6035 Weight: 1.00 Name: ENSBTAP00000009887/1-289 Len: 485 Check: 7923 Weight: 1.00 Name: bmy_14777T0/1-485 Len: 485 Check: 2933 Weight: 1.00 Name: ENSTTRP00000010098/1-239 Len: 485 Check: 5126 Weight: 1.00 // 1 50 ENSP00000438465/1-289 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009887/1-289 ---------- ---------- ---------- ---------- ---------- bmy_14777T0/1-485 MAPAASGXLS ALGNFLAQLI EKKQEKENCS QKLDVRGPLR YAIYGAAGSL ENSTTRP00000010098/1-239 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000438465/1-289 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009887/1-289 ---------- ---------- ---------- ---------- ---------- bmy_14777T0/1-485 LLPLRGALDP SRGPLGRRHE APSGPPPLRT RLPVIVLPHH ELPGVLKKSR ENSTTRP00000010098/1-239 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000438465/1-289 ---------- -MAFR----- ---------- ---------- ---------- ENSBTAP00000009887/1-289 ---------- -MAFR----- ---------- ---------- ---------- bmy_14777T0/1-485 CQSSGPRYCS RSAFPPALPP LQGKDAAAFA AKMQRGFWPA LQMNWRVWTP ENSTTRP00000010098/1-239 ---------- -MAFR----- ---------- ---------- ---------- 151 200 ENSP00000438465/1-289 ---------- -QALQLAACG LAGGSAAVLF SAVAVGKPRA GGDAEPRPAE ENSBTAP00000009887/1-289 ---------- -QALQLAACG LAGGSAAVLF SAVAVGKPRA GGDAEPRVVE bmy_14777T0/1-485 VQFISVNHLP LQALQLAACG LAGGSAAVFF SAVAVGKPRA GGDAELRVVE ENSTTRP00000010098/1-239 ---------- -QALQLAACG LAGGSAAVFF SAVAVGKPRA GGDAEPRVVE 201 250 ENSP00000438465/1-289 PPAWAGGARP GPGVWDPNWD RREPLSLINV RKRNVESGEE ELASKLDHYK ENSBTAP00000009887/1-289 PPAWAGTSRP GPGVWDPNWD RREPLSLVNL RKRNLETGEE ELTSRLDHCK bmy_14777T0/1-485 PPAWAGAARP GPGVWDSNWD RREPLSLVNL RKRNLEPGEE ELASRLDHYK ENSTTRP00000010098/1-239 PPAWAGAARP GPGVWDPNWD RREPLSLVNL RKRNLEPGEE ELASRLDHYK 251 300 ENSP00000438465/1-289 AKATRHIFLI RHSQYHVDGS LEKDRTLTPL G--------- ---------- ENSBTAP00000009887/1-289 AKATRHIFLI RHSQYHVDAS LEKDRTLTPL G--------- ---------- bmy_14777T0/1-485 AKATRHIFLI RHSQYHVDAS LEKDRTLTPL GTWLGPPAEA SLLEGALGAL ENSTTRP00000010098/1-239 AKATRHIFLI RHSQYHVDAS LEKDRTLTPL G--------- ---------- 301 350 ENSP00000438465/1-289 ---------- ---------- REQAELTGLR LASLGLKFNK IVHSSMTRAI ENSBTAP00000009887/1-289 ---------- ---------- REQAELTGLR LASLGLKFNK IVHSSMTRAV bmy_14777T0/1-485 GLFGPVSGVL GPDASLVIIS REQAELTGLR LASLGLKFNK IVHSSMTRAI ENSTTRP00000010098/1-239 ---------- ---------- REQAELTGLR LASLGMKFNK IVHSSMTRAI 351 400 ENSP00000438465/1-289 ETTDIISRHL PGVCKVSTDL LREGAPIEPD PPVSHWKPEA VQYYEDGARI ENSBTAP00000009887/1-289 ETTDIISKHL PGVCKVSTDL LREGAPIEPD PPVSHWKPEA VQYYEDGARI bmy_14777T0/1-485 ETTDIISKHL PGVCKVSTDL LREGAPIEPD PPVSHWKPEA VQYYEDGARI ENSTTRP00000010098/1-239 ETTDIISKHL PGVCKVSTDL MREGAPIEPD PPVSHWKPEA VQYYEDGARI 401 450 ENSP00000438465/1-289 EAAFRNYIHR ADARQEEDSY EIFICHANVI RYIVCRALQF PPEGWLRLSL ENSBTAP00000009887/1-289 EAAFRNYIHR ADAKQQEDSY EIFICHANVI RYIVCRALQF PPEGWLRLSL bmy_14777T0/1-485 EAAFRNYIHR ADAKQQEDSY EIFICHANVI RYIVCRALQF PPEGWLRLSL ENSTTRP00000010098/1-239 EAAFRNYIHR ADTKQQEDSY EIFICHANVI RYIVC----- ---------- 451 500 ENSP00000438465/1-289 NNGSITHLVI RPNGRVALRT LGDTGFMPPD KITRS ENSBTAP00000009887/1-289 NNGSITHLVV RPDGRVALRA LGDTGFMPPD KISRS bmy_14777T0/1-485 NNGSITHLVV RPDGRVALRT LGDTGFMPPD KISRS ENSTTRP00000010098/1-239 ---------- ---------- ---------- -----