KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:39:39 2014 Check: 00 ..
Name: ENSP00000292211/1-422 Len: 445 Check: 9736 Weight: 1.00
Name: ENSTTRP00000013274/1-422 Len: 445 Check: 9736 Weight: 1.00
Name: ENSBTAP00000009889/1-422 Len: 445 Check: 9736 Weight: 1.00
Name: bmy_09707T0/1-333 Len: 445 Check: 7453 Weight: 1.00
Name: BACU007473/1-410 Len: 445 Check: 9498 Weight: 1.00
//
1 50
ENSP00000292211/1-422 -MQQPQPQGQ QQPGPGQQLG GQGAAPGAGG GPGGGPGPGP CLRRELKLLE
ENSTTRP00000013274/1-422 -MQQPQPQGQ QQPGPGQQLG GQGAAPGAGG GPGGGPGPGP CLRRELKLLE
ENSBTAP00000009889/1-422 -MQQPQPQGQ QQPGPGQQLG GQGAAPGAGG GPGGGPGPGP CLRRELKLLE
bmy_09707T0/1-333 MWTSPEKKVT FKSG------ ---------- ---------- ----------
BACU007473/1-410 MWTSPEKKVT FKSG------ ---------- ---------- ---------K
51 100
ENSP00000292211/1-422 SIFHRGHERF RIASACLDEL SCEFLLAGAG GAGAGAAPGP HLPPRGSVPG
ENSTTRP00000013274/1-422 SIFHRGHERF RIASACLDEL SCEFLLAGAG GAGAGAAPGP HLPPRGSVPG
ENSBTAP00000009889/1-422 SIFHRGHERF RIASACLDEL SCEFLLAGAG GAGAGAAPGP HLPPRGSVPG
bmy_09707T0/1-333 ---------- ---------- ---------- ---------- ----------
BACU007473/1-410 SIFHRGHERF RIASACLDEL SCEFLLAGAG GAGAGAAPGP HLPPRGSVPG
101 150
ENSP00000292211/1-422 DPVRIHCNIT ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL
ENSTTRP00000013274/1-422 DPVRIHCNIT ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL
ENSBTAP00000009889/1-422 DPVRIHCNIT ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL
bmy_09707T0/1-333 ---------K ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL
BACU007473/1-410 DPVRIHCNIT ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL
151 200
ENSP00000292211/1-422 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ CTQEDVSSED EDEEMPEDTE
ENSTTRP00000013274/1-422 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ CTQEDVSSED EDEEMPEDTE
ENSBTAP00000009889/1-422 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ CTQEDVSSED EDEEMPEDTE
bmy_09707T0/1-333 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ ---------- -------DTE
BACU007473/1-410 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ CTQEDVSSED EDEEMPEDTE
201 250
ENSP00000292211/1-422 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS
ENSTTRP00000013274/1-422 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS
ENSBTAP00000009889/1-422 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS
bmy_09707T0/1-333 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS
BACU007473/1-410 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS
251 300
ENSP00000292211/1-422 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLK-------
ENSTTRP00000013274/1-422 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLK-------
ENSBTAP00000009889/1-422 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLK-------
bmy_09707T0/1-333 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLKVGGSLEA
BACU007473/1-410 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLKVGGSLEA
301 350
ENSP00000292211/1-422 ---------- -----VDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF
ENSTTRP00000013274/1-422 ---------- -----VDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF
ENSBTAP00000009889/1-422 ---------- -----VDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF
bmy_09707T0/1-333 PELDLELSLN SLLPRVDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF
BACU007473/1-410 PELDLELSLN SLLPRVDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF
351 400
ENSP00000292211/1-422 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL
ENSTTRP00000013274/1-422 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL
ENSBTAP00000009889/1-422 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL
bmy_09707T0/1-333 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL
BACU007473/1-410 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL
401 450
ENSP00000292211/1-422 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG
ENSTTRP00000013274/1-422 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG
ENSBTAP00000009889/1-422 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG
bmy_09707T0/1-333 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG
BACU007473/1-410 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG