KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:39 2014 Check: 00 .. Name: ENSP00000292211/1-422 Len: 445 Check: 9736 Weight: 1.00 Name: ENSTTRP00000013274/1-422 Len: 445 Check: 9736 Weight: 1.00 Name: ENSBTAP00000009889/1-422 Len: 445 Check: 9736 Weight: 1.00 Name: bmy_09707T0/1-333 Len: 445 Check: 7453 Weight: 1.00 Name: BACU007473/1-410 Len: 445 Check: 9498 Weight: 1.00 // 1 50 ENSP00000292211/1-422 -MQQPQPQGQ QQPGPGQQLG GQGAAPGAGG GPGGGPGPGP CLRRELKLLE ENSTTRP00000013274/1-422 -MQQPQPQGQ QQPGPGQQLG GQGAAPGAGG GPGGGPGPGP CLRRELKLLE ENSBTAP00000009889/1-422 -MQQPQPQGQ QQPGPGQQLG GQGAAPGAGG GPGGGPGPGP CLRRELKLLE bmy_09707T0/1-333 MWTSPEKKVT FKSG------ ---------- ---------- ---------- BACU007473/1-410 MWTSPEKKVT FKSG------ ---------- ---------- ---------K 51 100 ENSP00000292211/1-422 SIFHRGHERF RIASACLDEL SCEFLLAGAG GAGAGAAPGP HLPPRGSVPG ENSTTRP00000013274/1-422 SIFHRGHERF RIASACLDEL SCEFLLAGAG GAGAGAAPGP HLPPRGSVPG ENSBTAP00000009889/1-422 SIFHRGHERF RIASACLDEL SCEFLLAGAG GAGAGAAPGP HLPPRGSVPG bmy_09707T0/1-333 ---------- ---------- ---------- ---------- ---------- BACU007473/1-410 SIFHRGHERF RIASACLDEL SCEFLLAGAG GAGAGAAPGP HLPPRGSVPG 101 150 ENSP00000292211/1-422 DPVRIHCNIT ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL ENSTTRP00000013274/1-422 DPVRIHCNIT ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL ENSBTAP00000009889/1-422 DPVRIHCNIT ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL bmy_09707T0/1-333 ---------K ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL BACU007473/1-410 DPVRIHCNIT ESYPAVPPIW SVESDDPNLA AVLERLVDIK KGNTLLLQHL 151 200 ENSP00000292211/1-422 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ CTQEDVSSED EDEEMPEDTE ENSTTRP00000013274/1-422 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ CTQEDVSSED EDEEMPEDTE ENSBTAP00000009889/1-422 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ CTQEDVSSED EDEEMPEDTE bmy_09707T0/1-333 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ ---------- -------DTE BACU007473/1-410 KRIISDLCKL YNLPQHPDVE MLDQPLPAEQ CTQEDVSSED EDEEMPEDTE 201 250 ENSP00000292211/1-422 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS ENSTTRP00000013274/1-422 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS ENSBTAP00000009889/1-422 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS bmy_09707T0/1-333 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS BACU007473/1-410 DLDHYEMKEE EPAEGKKSED DGIGKENLAI LEKIKKNQRQ DYLNGAVSGS 251 300 ENSP00000292211/1-422 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLK------- ENSTTRP00000013274/1-422 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLK------- ENSBTAP00000009889/1-422 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLK------- bmy_09707T0/1-333 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLKVGGSLEA BACU007473/1-410 VQATDRLMKE LRDIYRSQSF KGGNYAVELV NDSLYDWNVK LLKVGGSLEA 301 350 ENSP00000292211/1-422 ---------- -----VDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF ENSTTRP00000013274/1-422 ---------- -----VDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF ENSBTAP00000009889/1-422 ---------- -----VDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF bmy_09707T0/1-333 PELDLELSLN SLLPRVDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF BACU007473/1-410 PELDLELSLN SLLPRVDQDS ALHNDLQILK EKEGADFILL NFSFKDNFPF 351 400 ENSP00000292211/1-422 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL ENSTTRP00000013274/1-422 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL ENSBTAP00000009889/1-422 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL bmy_09707T0/1-333 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL BACU007473/1-410 DPPFVRVVSP VLSGGYVLGG GAICMELLTK QGWSSAYSIE SVIMQISATL 401 450 ENSP00000292211/1-422 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG ENSTTRP00000013274/1-422 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG ENSBTAP00000009889/1-422 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG bmy_09707T0/1-333 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG BACU007473/1-410 VKGKARVQFG ANKSQYSLTR AQQSYKSLVQ IHEKNGWYTP PKEDG