KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:43 2014 Check: 00 .. Name: ENSP00000308310/1-229 Len: 331 Check: 1191 Weight: 1.00 Name: ENSBTAP00000009916/1-245 Len: 331 Check: 134 Weight: 1.00 Name: bmy_18647T0/1-251 Len: 331 Check: 8635 Weight: 1.00 Name: BACU007862/1-309 Len: 331 Check: 6277 Weight: 1.00 Name: ENSTTRP00000008117/1-257 Len: 331 Check: 8616 Weight: 1.00 // 1 50 ENSP00000308310/1-229 MIPLQKDNQE EGVCPICQES LKEAVSTNCG HLFCRVCLTQ HVEKASASGV ENSBTAP00000009916/1-245 MGSLREDRQE EGICPICQEC LKEAVRTDCG HLFCRACLAQ HLEKASASGV bmy_18647T0/1-251 MLPLQEDSRE EGICPICQEC LKEA------ ---------- ---------- BACU007862/1-309 MLPLQEDSRE EGICPICQEC LKEAVRTDCR HLFCRVCLAQ HLEKASASGV ENSTTRP00000008117/1-257 MIPLREDSRE EGICPICQEC LKEAVRTDCR HLFCRACLAQ HLEKASASGV 51 100 ENSP00000308310/1-229 FCCPLCRKPC SEEVLGTGYI CPNHQKRVCR FCEESRLLLC VECLVSPEHM ENSBTAP00000009916/1-245 RSCPLCRKPC SEGVLGAGYT CDSPQKKAYW FCEESRRLLC MECRVTPEHK bmy_18647T0/1-251 ---------- ---------- ---------- ---------- ---------- BACU007862/1-309 LSCPLCRKPC SEGVLGAGYT CDSHQKKVCW FCEESRRLLC VECRVSPEHK ENSTTRP00000008117/1-257 LNCPLCRKPC SEGVLGAGYT CDSHQKKVCW FCEESRCLLC VECRVSPEHK 101 150 ENSP00000308310/1-229 SHHELTIENA LSHYKERLNR RSRKLRKDIA ELQRLKAQQE KKLQAL---- ENSBTAP00000009916/1-245 SHCELPIENA ISHYKERLEG RIKRLNRRIR RRRQLRIQEE -ILQEM--QA bmy_18647T0/1-251 SHCELAIENA ISHYKERLNR RIRKLRKDIC ELQQLRAQEE ERLQAM--QT BACU007862/1-309 CHCELAIENA ISHYKERLNR RIRKLRKDIC ELQRLRAQEE ERLQAM--QA ENSTTRP00000008117/1-257 SHCELAIENA ISHYKERLNR RIRKLRKDIC ELQRLRAQEE ERLQAMQFQA 151 200 ENSP00000308310/1-229 ---------- ---------- -----QQWLG QLEHMPAEAA RILDISRAVT ENSBTAP00000009916/1-245 DHGTHRLEAE LEQQPQTRRQ LDAPAQQRPD QRRDVSAELS RSPGISRALL bmy_18647T0/1-251 DCRTHRLEAE LERQHRAGRQ LDALPQQRPG QLEDMPAEVS RITGISRAMI BACU007862/1-309 DCRTHRLEAE LERQHQAGRQ LDALPQQRPG QLEDMPAEVS RIPGISRAMI ENSTTRP00000008117/1-257 DCRTHRLEAE LERQHRARRQ LDALP-QRPG QLEDMPAEVS RIPGISRAMI 201 250 ENSP00000308310/1-229 QLRSLVIDLE RTAKELDTNT LKNAGDLLNR SAPQKLEVIY PQL------- ENSBTAP00000009916/1-245 QFSSLVTDPE GMAKKLDTSL LKDAGDLLNR L------VLW LPL------- bmy_18647T0/1-251 QLSSLVTELE GMAKKLDASL LKDASDLLNR R-PSQGQVLG SSLWTLCLGE BACU007862/1-309 QLSSLVTELE GMAKKLDASL LKDASDLLNR SAPEQSEAIY PNL------- ENSTTRP00000008117/1-257 QLSSLVTELE GMAKKLDASL LKDASDLLNR SAPEQLEVIY PNL------- 251 300 ENSP00000308310/1-229 ---------- EKGVSELLLQ PPQKL----- ---------- ---------- ENSBTAP00000009916/1-245 ---------- ----QGSGPK TSVFL----- ---------- ---------- bmy_18647T0/1-251 GSCTLLGAQG ELGPSSPEPK EGKDLLGEGG SEGVDGFLSD GIGKGHPAHL BACU007862/1-309 ---------- EKRINESLNQ PSSAV---LI SSSLDQLISD SPQPPGSPSP ENSTTRP00000008117/1-257 ---------- EKRINDSLNQ SPQQL----- ---------- ---------- 301 350 ENSP00000308310/1-229 ---------- ---------- ---------- - ENSBTAP00000009916/1-245 ---------- ---------- ---------- - bmy_18647T0/1-251 VVDRHPHLLG LLLQGQAGGE GTQGRDEAPS - BACU007862/1-309 NLSNLPLGLP SAPSGLPPPE HATAVIRCLT L ENSTTRP00000008117/1-257 ---------- ---------- ---------- -