KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:39:44 2014 Check: 00 ..
Name: ENSP00000260118/1-318 Len: 518 Check: 162 Weight: 1.00
Name: ENSBTAP00000009917/1-318 Len: 518 Check: 2359 Weight: 1.00
Name: bmy_01351T0/1-453 Len: 518 Check: 9882 Weight: 1.00
Name: BACU002297/1-281 Len: 518 Check: 9760 Weight: 1.00
Name: ENSTTRP00000009135/1-318 Len: 518 Check: 9908 Weight: 1.00
//
1 50
ENSP00000260118/1-318 MASPGCLLCV LGLLLCGAAS LELSRPHGDT AKKPIIG--- ----------
ENSBTAP00000009917/1-318 MARLGRLLSV LGLVLCGATG LGLSAPPAPT PKKPIIG--- ----------
bmy_01351T0/1-453 MATLGLLLSV LGLVLCGTAS LGLSAPPTPT SKKPIIGEEA AGAGGRGPGP
BACU002297/1-281 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000009135/1-318 MASLGLLLRV LGLVLCGAAS LGLSASPAPT SKKPIIG--- ----------
51 100
ENSP00000260118/1-318 ---------- ---------- ---------- --------IL MQKCRNKVMK
ENSBTAP00000009917/1-318 ---------- ---------- ---------- --------IL MQKCHNKNMR
bmy_01351T0/1-453 RWALPAAALR RLRPVLERPK FRKQWFLGNK SRVKYRKRIL MQRCHSENMK
BACU002297/1-281 ---------- ---------- ---------- --------IL MQKCHSENMK
ENSTTRP00000009135/1-318 ---------- ---------- ---------- --------IL MQTCHSENMK
101 150
ENSP00000260118/1-318 NYGRYYIAAS YVKYLESAGA RVVPV----- ---------- ----------
ENSBTAP00000009917/1-318 ALGKYYIAAS YVKFLESAGA RVVPV----- ---------- ----------
bmy_01351T0/1-453 ILGKYYIAAS YVKYLESAGA RVVPIRQLSG AHFKRSTCSP LATVPVTPFH
BACU002297/1-281 ILGKYYIAAS YVKYLESAGA RVVPI----- ---------- ----------
ENSTTRP00000009135/1-318 ILGKYYIAAS YVKYLESAGA RVVPI----- ---------- ----------
151 200
ENSP00000260118/1-318 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000009917/1-318 ---------- ---------- ---------- ---------- ----------
bmy_01351T0/1-453 IAEAVSFAII TRLFAVFFKK NLLKGSFVSR KSDNMEAPSV FKECDLVCFA
BACU002297/1-281 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000009135/1-318 ---------- ---------- ---------- ---------- ----------
201 250
ENSP00000260118/1-318 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000009917/1-318 ---------- ---------- ---------- ---------- ----------
bmy_01351T0/1-453 CKASEALEFV TPAAPNQQLS PLIVINRARK FKDDDYEFLN STAHLGLEES
BACU002297/1-281 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000009135/1-318 ---------- ---------- ---------- ---------- ----------
251 300
ENSP00000260118/1-318 ---------- -----RLDLT EKDYEILFKS INGILFPGGS VDLRRSDYAK
ENSBTAP00000009917/1-318 ---------- -----RLDLK NEEYEKLFKS INGVLFPGGS VNLMRSGYAR
bmy_01351T0/1-453 LEEFSGKAQL RSGHHRLDLK DEEYEKLFKS INGILFPGGS VNLMKSGYAH
BACU002297/1-281 ---------- -----RLDLK DEEYEKLFKS INGILFPGGG VNLMKSGYAH
ENSTTRP00000009135/1-318 ---------- -----RLDLK DEEYEKLFKS INGILFPGGS VDLINSGYAH
301 350
ENSP00000260118/1-318 VAKIFYNLSI QSFDDGDYFP VWGTCLGFEE LSLLISGECL LTATDTVDVA
ENSBTAP00000009917/1-318 VAKMFYNLSI KSFGEGDYFP VWGTCLGFEE LIYLVSGESL LTLTDTVGIK
bmy_01351T0/1-453 VAKIFYKLAI Q--------- ---------- ---------- ----------
BACU002297/1-281 VAKIFYKLAI QGFGNGDYFP TWGTCLGFEE LTYLVSGESL LTLTDTVGIK
ENSTTRP00000009135/1-318 VAKIFYKLAI QGFGNGDYFP TWGTCLGFEE LTYLVSGESL LTLTDTVGIK
351 400
ENSP00000260118/1-318 MPLNFTGGQL HSRMFQNFPT ELLLSLAVEP LTANFHKWSL SVKNFTMNEK
ENSBTAP00000009917/1-318 LPLNFSRGTL QSRMFQNFPA DLLLSLAVEP LTAHFHKWSL SVMNFTKNEK
bmy_01351T0/1-453 --VSFC--PL QSRMFQNFPA DLLLSLAIEP LTANFHKWSL SVKDVKHNLI
BACU002297/1-281 MPLNFTRGPL QSRMFQNFPA DLLLSLAVEP LTANFHKWSL SVKNFTMNEK
ENSTTRP00000009135/1-318 MPLNFTRGPL QSRMFKNFPA DLLLSLAIEP LTANFHKWSL SVKNFTMNEK
401 450
ENSP00000260118/1-318 LKKFFNVLTT NTDGKIEFIS TMEGYKYPVY GVQWHPEKAP YEWKNLDGIS
ENSBTAP00000009917/1-318 LKAFFSILTT NTDGNIDFIS TMEGYRYPIY GVQWHPEKAP YEWGQLRGIS
bmy_01351T0/1-453 VR-------- ---------- ----YQYPVY GVQWHPEKAP YEWGKLKGIS
BACU002297/1-281 LKAFFNILTT NTDGYTEFIS TMEGYQYPVY GVQWHPEKAP YEWGKLKGIS
ENSTTRP00000009135/1-318 LKAFFNILTT NTDGSIEFIS TMEGYQYPVY GVQWHPEKAP YEWGKLKGIS
451 500
ENSP00000260118/1-318 HAPNAVKTAF YLAEFFVNE- --------AR KNNHHFKSES EEEKALIYQF
ENSBTAP00000009917/1-318 HAPNAVKAAF YLAEFFVAE- --------AR KSNHHFESDV EETKALIYQY
bmy_01351T0/1-453 HAPNAVRAAF YLAEFFVAED SPPITLLRAR KNNHHFESDV EEGKALIYQY
BACU002297/1-281 HAPNAVRAAF YLAEFFVAE- --------AR KNNHHFESDV EEGKALIYQY
ENSTTRP00000009135/1-318 HAPNAVRAAF YLAEFFVAE- --------AR KNNHHFESDV EEGKALIYQY
501 550
ENSP00000260118/1-318 SPIYTGNISS FQQCYIFD
ENSBTAP00000009917/1-318 RPTYTGNVSS FQQSYIFD
bmy_01351T0/1-453 RPVYTGNISS FQQSYIFD
BACU002297/1-281 RPVYTGNISS FQQSYIFD
ENSTTRP00000009135/1-318 RPVYTGNISS FQQSYIFD