KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:39:45 2014 Check: 00 .. Name: ENSP00000252321/1-613 Len: 641 Check: 2876 Weight: 1.00 Name: ENSBTAP00000009938/1-598 Len: 641 Check: 8126 Weight: 1.00 Name: bmy_21160T0/1-597 Len: 641 Check: 2625 Weight: 1.00 Name: BACU003092/1-629 Len: 641 Check: 8880 Weight: 1.00 // 1 50 ENSP00000252321/1-613 MEIALVPLEN GGAMTVRGGD EARA------ ---------- ---------- ENSBTAP00000009938/1-598 MEIALVPLEN GGAMTVRGEE EA-------- ---------- ---------- bmy_21160T0/1-597 MEIALVPPEN GGAMTVRGGE EV-------- ---------- ---------- BACU003092/1-629 MEVALVPPEN GGAVTVRGGE EVRATGGALR CPPTAALSEG LKEPAPRDRG 51 100 ENSP00000252321/1-613 -GCGQATGGE LQCPPTAGLS DGPKEPAPKG R-GAQRDADS GVRPLPPLPD ENSBTAP00000009938/1-598 ----RTTAGQ LRCPTTAALS DGPKQPAPRR RSGGERGA-- ---------D bmy_21160T0/1-597 ----RATGGA LRCPPTAALS DGPKEPAPRD RGGAERGA-- ---------D BACU003092/1-629 GEGGRATGGA LRCPPTAALS EGLKEPAPRD RGGAERGA-- ---------D 101 150 ENSP00000252321/1-613 PGVRPLPPLP EELPRPRRPP PEDEEEEGDP GLGTVEDQAL GTASLHHQRV ENSBTAP00000009938/1-598 PGGRPAPPPR QELPQASPRP PEEEDGEDDP ALGVAGDQVL GPGSLHHQRV bmy_21160T0/1-597 PGGRPVPPVP QKLPRARRLP PEDEEGEGDP VLGVVEDQVL GSGSLHHQRI BACU003092/1-629 PGGRPVPPVP QELPRARRLP PEDEEGEGDP ALGVAEDQVL GSGSLHHQRI 151 200 ENSP00000252321/1-613 HINISGLRFE TQLGTLAQFP NTLLGDPAKR LRYFDPLRNE YFFDRNRPSF ENSBTAP00000009938/1-598 LINISGLRFE TQLGTLAQFP NTLLGDPAKR LRYFDPLRNE YFFDRNRPSF bmy_21160T0/1-597 LINISGLRFE TQLGTLAQFP DTLLGDPAKR LRYFDPLRNE YFFDRNRPSF BACU003092/1-629 LINISGLRFE TQLGTLAQFP DTLLGDPAKR LRYFDPLRNE YFFDRNRPSF 201 250 ENSP00000252321/1-613 DGILYYYQSG GRLRRPVNVS LDVFADEIRF YQLGDEAMER FREDEGFIKE ENSBTAP00000009938/1-598 DGILYYYQSG GRLRRPVNVS LDVFADEIRF YQLGEEAMER FREDEGFIKE bmy_21160T0/1-597 DGILYYYQSG GRLRRPVNVS LDVFTDEIRF YQLGDEAMER FREDEGFIKE BACU003092/1-629 DGILYYYQSG GRLRRPVNVS LDVFADEIRF YQLGDEAMER FREDEGFIKE 251 300 ENSP00000252321/1-613 EEKPLPRNEF QRQVWLIFEY PESSGSARAI AIVSVLVILI SIITFCLETL ENSBTAP00000009938/1-598 EEKPLPRNEF QRQVWLIFEY PESSGSARAI AIVSVLVILI SIITFCLETL bmy_21160T0/1-597 EEKPLPRNEF QRQVWLIFEY PESSGSARGI AIVSVLVILI SIITFCLETL BACU003092/1-629 EEKPLPRNEF QRQVWLIFEY PESSGSARGI AIVSVLVILI SIITFCLETL 301 350 ENSP00000252321/1-613 PEFRDERELL RHPPAPHQPP APAPGANGSG VMAPPSGPTV APLLPRTLAD ENSBTAP00000009938/1-598 PEFRDERELL RHPPVPHQPP GPHRGPNGSG AAAPPSGPTV APLLPRTLAD bmy_21160T0/1-597 PEFRDERELL RHPPVPHQPP EPHREANGSG EAAPPSGPTA APLLPRTLAD BACU003092/1-629 PEFRDERELL RHRPVPHQPP EPHREANGSG EAAPPSGPTA APLLPRTLAD 351 400 ENSP00000252321/1-613 PFFIVETTCV IWFTFELLVR FFACPSKAGF SRNIMNIIDV VAIFPYFITL ENSBTAP00000009938/1-598 PFFIVETTCV IWFTFELLVR FFACPSKAEF SRNIMNIIDV VAIFPYFITL bmy_21160T0/1-597 PFFIVETTCV IWFTFELLVR FSACPSKAGF SRNIMNIIDV VAIFPYFITL BACU003092/1-629 PFFIVETTCV IWFTFELLVR FFACPSKAGF SRNIMNIIDV VAIFPYFITL 401 450 ENSP00000252321/1-613 GTELAEQQPG GGGGGQNGQQ AMSLAILRVI RLVRVFRIFK LSRHSKGLQI ENSBTAP00000009938/1-598 GTELVEQQQP GGGGGQNGQQ AMSLAILRVI RLVRVFRIFK LSRHSKGLQI bmy_21160T0/1-597 GTELLEQQPG -GGGGQNGQQ AMSLAILRVI RLVRVFRIFK LSRHSKGLQI BACU003092/1-629 GTELLEQQPG -GGGGQNGQQ AMSLAILRVI RLVRVFRIFK LSRHSKGLQI 451 500 ENSP00000252321/1-613 LGKTLQASMR ELGLLIFFLF IGVILFSSAV YFAEADNQGT HFSSIPDAFW ENSBTAP00000009938/1-598 LGKTLQASMR ELGLLIFFLF IGVILFSSAV YFAEADNQET HFSSIPDAFW bmy_21160T0/1-597 LGKTLQASMR ELGLLIFFLF IGVILFSSAV YFAEADNQET HFSSIPDAFW BACU003092/1-629 LGKTLQASMR ELGLLIFFLF IGVILFSSAV YFAEADNQET HFSSIPDAFW 501 550 ENSP00000252321/1-613 WAVVTMTTVG YGDMRPITVG GKIVGSLCAI AGVLTIALPV PVIVSNFNYF ENSBTAP00000009938/1-598 WAVVTMTTVG YGDMRPVTVG GKIVGSLCAI AGVLTIALPV PVIVSNFNYF bmy_21160T0/1-597 WAVVTMTTVG YGDMRPVTVG GKIVGSLCAI AGVLTIALPV PVIVSNFNYF BACU003092/1-629 WAVVTMTTVG YGDMRPVTVG GKIVGSLCAI AGVLTIALPV PVIVSNFNYF 551 600 ENSP00000252321/1-613 YHRETDHEEP AVLKEEQGTQ SQGPGLDRGV QRKVSGSRGS FCKAGGTLEN ENSBTAP00000009938/1-598 YHRETDHEEP AAVKEEQGSQ SQGTGSAGGG QRKASWSKGS LCKVAGSLEN bmy_21160T0/1-597 YHRETDHEEQ AALKEEQGSQ SQGAGPASAG QRKASWSKAS PCKAAGSLEN BACU003092/1-629 YHRETDHEEQ AALKEEQGSQ SQGAGPASAG QRKASWSKAS PCKAAGSLEN 601 650 ENSP00000252321/1-613 ADSARRGSCP LEKCNVKAKS NVDLRRSLYA LCLDTSRETD L ENSBTAP00000009938/1-598 ADGSRRGSCS LEKCNLKAKS NVDLRRSLYA LCLDTSRETD L bmy_21160T0/1-597 ADGSRRGSCP LEKCNLKAKS NVDLRRSLYA LCLDTSRETD L BACU003092/1-629 ADGSRRGSCP LEKCNLKAKS NVDLRRSLYA LCLDTSRETD L