KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:39:46 2014 Check: 00 .. Name: ENSP00000244174/1-521 Len: 671 Check: 594 Weight: 1.00 Name: ENSBTAP00000009944/1-465 Len: 671 Check: 3738 Weight: 1.00 Name: bmy_01849T0/1-466 Len: 671 Check: 8079 Weight: 1.00 Name: BACU009274/1-647 Len: 671 Check: 4552 Weight: 1.00 // 1 50 ENSP00000244174/1-521 MG-------- ---------- ---------- ---------- ---------- ENSBTAP00000009944/1-465 CS-------- ---------- ---------- ---------- ---------- bmy_01849T0/1-466 MT-------- ---------- ---------- ---------- ---------- BACU009274/1-647 MGGRAQRGAR WADLDTWLSQ SPVTPGGLSW RFLPVLLGQR CSASFAGQGE 51 100 ENSP00000244174/1-521 ---------- ---------- --LGRCIWEG WTLESEALRR DMGTWLLACI ENSBTAP00000009944/1-465 ---------- ---------L HSPSAQPLPG WTLQSEVLMR EAGT----CF bmy_01849T0/1-466 ---------- ---------- ---------- ---------- ---------- BACU009274/1-647 GVGGGPLGVP LTGAPLGHSA HSPSAQPLPG WTLQSKVLMR EVGTWLLTCT 101 150 ENSP00000244174/1-521 CICTCVCLGV SVTGEGQG-- -PRSRTFTCL TNNILRIDCH WSAPELGQGS ENSBTAP00000009944/1-465 LLCAWLSLGV PVLGDRGG-- -PGPGAFTCY NNNILRIECR WPGPALGQGA bmy_01849T0/1-466 --EACSGRAV RLA------- -AGPGTFTCH TNNILRIDCH WSAPELGQGA BACU009274/1-647 CICAWVGLGV SVPGDGGGSL FPGPGTFTCH NNNILRIDCH WSAPELDQGA 151 200 ENSP00000244174/1-521 SPWLLFTSNQ APGGTHKCIL RGSECTVVLP PEAVLVPSDN FTITFHHCMS ENSBTAP00000009944/1-465 GSWLLFTSNV VPGSKHKCVF WAGVCTVELP PEEVLVPADN FTITFHHHIS bmy_01849T0/1-466 GPWLLFTSNH APGSKHRCVF LASVCTVELP PEEVLVPSDN FTITFHRHVS BACU009274/1-647 GPWLLFTSNH APGSKHRCVF LASVCTVELP PEEVLVPSDN FTITFHRHVS 201 250 ENSP00000244174/1-521 GREQVSLVDP EYLPRRHVKL DPPSDLQSNI SSGHCILTWS ISPALEPMTT ENSBTAP00000009944/1-465 GKEQVSLVDP QYLPRRHVKL DPPSDLQSNV SSEHCVLTWS VSPALEPLAM bmy_01849T0/1-466 GKEQVSLVDP QYLPRRHVKL DPPSDLLSNI SSEHCVLTWR ISPALEPLAS BACU009274/1-647 GKEQVSLVDP QYLPRRHVKL DPPSDLLSNI SSEHCVLTWS ISPALEPLAS 251 300 ENSP00000244174/1-521 LLSYELAFKK QEEAWEQAQH RDHIVGVTWL ILEAFELDPG FIHEARLRVQ ENSBTAP00000009944/1-465 LLSYELAFKR QEEAWEWARH KDHIVGVTWL KLEAAELDPG SAYEARLRVQ bmy_01849T0/1-466 LLSYELAFKR QEETWERARH KDHIVGVTWL KLEATELDPG STYEARLRVQ BACU009274/1-647 LLSYELAFKR QEETWERAWH KDHIVGVTWL KLEATELDPG STYEARLRVQ 301 350 ENSP00000244174/1-521 MATLEDDVVE EERYTGQ--- ---------- ---------- ---------- ENSBTAP00000009944/1-465 MAALEGEVAE EERYEGV--- ---------- ---------- ---------- bmy_01849T0/1-466 MATTEDAVAE EECYEGQ--- ---------- ---------- ---------- BACU009274/1-647 MATLEDAVAE EERYEGPWSD WSQPACFHSP QRQGLRAWHK DHIVGVTWLK 351 400 ENSP00000244174/1-521 ---------- ---------- ---------- ------WSEW SQPVCFQAPQ ENSBTAP00000009944/1-465 ---------- ---------- ---------- ------WSDW SQPACFAAPP bmy_01849T0/1-466 ---------- ---------- ---------- ------WSDW SQPACFHSPQ BACU009274/1-647 LEATELDPGS TYEARLRVQM ATLEDAVAEE ERYEGPWSDW SQPACFHSPQ 401 450 ENSP00000244174/1-521 RQ--GPLIPP WGWPGNTLVA VSIFLLLTGP TYLLFKLSPR VKRIFYQNVP ENSBTAP00000009944/1-465 RRATGRLVPA LGQSDSTLVA VSLFLLLSSL IYLLFKLSPR MKTALYKDVP bmy_01849T0/1-466 RQ--GRLVPA LGQPISTLVT VSIFLLLTSL TYLLFKLSSR MKTAFYQDVP BACU009274/1-647 RQ--GRLVPA LGQPDSTLVA VSIFLLLTSL TYLLFKLSPR MKTALYQDVP 451 500 ENSP00000244174/1-521 SPAMFFQPLY SVHNGNFQ-- --TWMGAHGA GVLLSQDCAG TPQGA-LEPC ENSBTAP00000009944/1-465 SPGPFFQPLY SVHNGDFQ-- --TWIGARGA SPQAGRDHAG PPRGALLEAR bmy_01849T0/1-466 SPGPFFRSLY SVHNGDFQQP LETWIGAHRA GPQPSPDCMG PARGA-WETR BACU009274/1-647 SPGPFFQSLY SVHNGDFQ-- --TWIGAHRA GPQPSPDCMG PAQGA-WETH 501 550 ENSP00000244174/1-521 VQEATALLTC GPARPWKSVA LEEEQEGPGT RLPGNLSSED VLPAGCTEWR ENSBTAP00000009944/1-465 VREAVALLHC DPADAWPSVG LEEE-GGPGP GLPA-----G VLPAGHVEWG bmy_01849T0/1-466 VQEAIALLTY DPVDVGPLAG LEGE-GSTGT GLPA-----D ALPAGCVEWG BACU009274/1-647 VQEAIALLTY DPVDVGPLAG LEEE-GSTGT GLPA-----D ALPAGCVEWG 551 600 ENSP00000244174/1-521 VQTLAYLPQE DWAPTSLTRP APPDSEGSRS SSSSSSSNNN NYCALGCYGG ENSBTAP00000009944/1-465 VPSPAYLPQE DWAPAGRPRL APPRCEGS-- --------SG DYCALDCSV- bmy_01849T0/1-466 GPPPAYLPQE AWAPSGPTRL APPQSQGS-- --------SS DYCALGCSRW BACU009274/1-647 GPPPAYLPQE AWAPAGLARL APPQSQGS-- --------SS DYCALGCSRW 601 650 ENSP00000244174/1-521 WHLSALPGNT QSSGPIPALA CGLSCDHQGL ETQQGVAWVL A-GHCQRPGL ENSBTAP00000009944/1-465 GSTSAFPGSA WSSEPPQPPP VAFSVTSRA- ---------- ---------- bmy_01849T0/1-466 GCPSTFTGNA QSSEPDPALA CGLFCDQQSL DARPGGDSTS S--------L BACU009274/1-647 GCPSTFTGNA QSSEPDPALA CGLFCDQQSL DARPGGGELQ PAGWGDHVGT 651 700 ENSP00000244174/1-521 HEDLQGMLLP SVLSKARSWT F ENSBTAP00000009944/1-465 ---------- ---------- - bmy_01849T0/1-466 QDSLLGLVGP EGLAPYLLLR - BACU009274/1-647 KPSVLGCRLA KALTPSTTSP -