KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:39:50 2014 Check: 00 .. Name: ENSP00000416984/1-525 Len: 638 Check: 7568 Weight: 1.00 Name: ENSBTAP00000009958/1-523 Len: 638 Check: 486 Weight: 1.00 Name: ENSTTRP00000003311/1-551 Len: 638 Check: 6288 Weight: 1.00 Name: bmy_22258T0/1-635 Len: 638 Check: 7478 Weight: 1.00 Name: BACU010630/1-427 Len: 638 Check: 953 Weight: 1.00 // 1 50 ENSP00000416984/1-525 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000009958/1-523 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003311/1-551 ---------- ---------- ---------- ---------- ---------- bmy_22258T0/1-635 MHTTDFARSG PQRHGLRREE DGVGPADPAH PTSRGQACFE RHIPKNSCSG BACU010630/1-427 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000416984/1-525 ------MRVF C--------- ---VGLLLFS VTWAAP---- --------TF ENSBTAP00000009958/1-523 ------MRIF C--------- ---LELLLFS LTLAAP---- --------TL ENSTTRP00000003311/1-551 ------MRII C--------- ---LGLLLFS LTLAAP---- --------TL bmy_22258T0/1-635 ISDHLPVNVL CQHQPSDHRS REDASLLHPR ETMPSPFQGH VQGQESCQTL BACU010630/1-427 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000416984/1-525 QPQTEKTKQS CVEEQR---- ---------- ---------- -------QEE ENSBTAP00000009958/1-523 QPQAEKKKQD YVEEQR---- ---------- ---------- -------QEE ENSTTRP00000003311/1-551 QPQAEKMKQD SVEEQRITYK GHHEKHGYYL FKFVYTSSGR KNQTDVKQEE bmy_22258T0/1-635 QPQAEKMKQD SVEEQRIMYK GHHEKHGYYV FKYVYTSSGR KNQTDV-KEE BACU010630/1-427 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000416984/1-525 KNKDNIGFHH LGKRINQELS SKENIVQERK KDLSLSEASE NKGSSKSQNY ENSBTAP00000009958/1-523 KNK-GIALPH SGKR-SQEPA PKENIVLKKE EDLFLPRTNE NNKSTKSQSL ENSTTRP00000003311/1-551 KNKDNIALPH SGQRRHQEPV PKENIVQEKE KDVSLPGTNE NNKSTKSQNL bmy_22258T0/1-635 KNKDNIALPH SGKRRNQEPA PKENIVQEKE KDLSLPGTNE NNKSTKSQSL BACU010630/1-427 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000416984/1-525 FTNRQRLNKE YSISNKENTH NGLRMSIYPK STGNKGFEDG DDAISKLHDQ ENSBTAP00000009958/1-523 SGNKQSMNED YIISSKENAH SDLKMSIYPE SKGKHRAEDR DSAIRKLHSQ ENSTTRP00000003311/1-551 LEDRQTMNKD YRISNKENAH NDLKTSIYPE STGSRGTEDG DNALSKLHDQ bmy_22258T0/1-635 LENRQTMKKD YRISNKENAH NDLKMSISPE STGNHGTEDG DNAGSKLHDQ BACU010630/1-427 ------MKKD YRISNKENAH NDLKMFISPE STGNHGTEDG DNAISKLHDQ 251 300 ENSP00000416984/1-525 EEYGAALIRN NMQHIMGPVT AIKLLGEENK ENTPRNVLNI IPASMNYAKA ENSBTAP00000009958/1-523 EGYGAALIRN SMYHGMEPRT VTELLGGENK ENKPRNVLGK IPADANYAKA ENSTTRP00000003311/1-551 EEYGKALIRN NMHHIMEPGA VTELLREENK ENKARNVLSK VPAGANYAKA bmy_22258T0/1-635 EEYGKALIRN NMHHIMEPGA VTELLREEIK ENKPRNVLSK VPAGANYAKA BACU010630/1-427 EESGEALIRN NMHHIMEPGA VIELLREEIK ENKLRNVLSK VPAGANYAKA 301 350 ENSP00000416984/1-525 HSKDKKKPQR DSQAQKSPVK SKSTHRIQHN IDYLKHLSKV KKIPSDFEGS ENSBTAP00000009958/1-523 PSQL-KNHQR DSQAQNIPVK SKSTHLTQHN MDYLKQLPKV KKIPSDFEGS ENSTTRP00000003311/1-551 PSRIKKNHQR DSQAQNIPVK SKSTHRIQHN MDCLKQLPKA KQVSSDFEGS bmy_22258T0/1-635 PSKIKKNHQR DSQAQNIPVK SKSTHRIQHN MDYLKQLPKV KKVSSDFEGS BACU010630/1-427 PSKIKKNHHR DSHAQNIPVK SKSTHRIQHN MDYLKQLPKV KKVSSDFEGS 351 400 ENSP00000416984/1-525 GYTDLQERGD NDISPFSGDG QPFKDIPGKG EATGPDLEGK DIQTGFAGPS ENSBTAP00000009958/1-523 GYPDLQGRGD NDLSPFSGDG PPFKDISGKG DAIDPDRKGT DIQTELSIPS ENSTTRP00000003311/1-551 GYPDLQGQED SS-SPFSGDG PPFKDISGKG DAIRPDREGT DIQTEFSSPS bmy_22258T0/1-635 GYPDLQGQED NDISPFSGDG TPFKDISGKG DAIRPDREGA DIQTEFSSPS BACU010630/1-427 GYPDLQGQED NDLSPFSGDG PPFKDISGKG DAIRPDREGA DIQTEFSSPS 401 450 ENSP00000416984/1-525 EAESTHLDTK KPGYNEIPER EENGGNTIGT RDETAKEADA VDVSLVEGSN ENSBTAP00000009958/1-523 ETETTSPDAK GPGYNEIPEK ERNGRKTTGT RGKTAQEANT -DVSLVEGSN ENSTTRP00000003311/1-551 EAETINPDVR GPGYNEIPEK EGNGGNTIGT RDETAQKANA ADVSLVEG-N bmy_22258T0/1-635 EAETINPDAR GPGYNEIPEK EGNGGNTIGT RDETAQKANA ADVSLVEGSN BACU010630/1-427 EAGTINPDAR GPGYNEIPEK EGNGGNTIGT RDETAQKANA ADVSLVEGSN 451 500 ENSP00000416984/1-525 DIMGSTNFKE LPGREGNRVD AGSQNAHQGK VEFHYPPAPS KEKRKEGSSD ENSBTAP00000009958/1-523 DIIGGTDFKK LPGQEGNRVH GGSQDAHQGE IEFHYLHVPS KDQRKDGSRD ENSTTRP00000003311/1-551 NIIGSTDFKK LSGEEGSRVD GGSQNARQGE IEFHYPHAPT EDKREDGGSD bmy_22258T0/1-635 NIIGSTNFKK LSGKEGSRVD GGSQNAHQGK IEFHYPHAPT EDKRKDGSSD BACU010630/1-427 NIIGSTNFKK LPGKEGSRVD GGSQNAHQGK IEFHYPHAPT EDKRKDGSSD 501 550 ENSP00000416984/1-525 AAESTNYNEI PKNGKGSTRK GVDHSNRNQA TLNEKQRFPS KGKSQGLPIP ENSBTAP00000009958/1-523 GAEGTNYNEI PQNGKGSSRK GTQHSTRYQE PSKEKQRFPS KSEGQGQLIP ENSTTRP00000003311/1-551 GAEST--NEI PKNGKGSSRK DTEHSKRNQM TSNEKQRFPS KGKGQGQFIP bmy_22258T0/1-635 GAEST--NEI PKNGKGSSRK DTEHSNXNQA TSNEKQRFPS TGKGQGQFIP BACU010630/1-427 GAESI--NEI PKNGKGSSRK DTEHSNRNQA TSNEKQRFPS KGKGQGQFIP 551 600 ENSP00000416984/1-525 SRGLDNEIKN EMDSFNGPSH E-NIITHGRK YHYVPHRQNN STRNKGMPQG ENSBTAP00000009958/1-523 PRGLDNEIKH EIGSHNGPNN EGTITTHSRK NHYVPHRQNN YAWNKGGSQS ENSTTRP00000003311/1-551 SRGLDNEIKN EIGSHNGPNN EGTVITHSRK NYSVPHRRYN SMQNKGVLQS bmy_22258T0/1-635 SRGXDNEIKN EIGSHNGPNN EGTIITHSRK NYYVPHRQNN SMQNKGVSQS BACU010630/1-427 SRGLDNEIKN EIGSHNGPNN EGTIITHSRK NYYVPH---N SMQNKGVSQS 601 650 ENSP00000416984/1-525 KGSWG-RQPH SNRRFSSRRR DDSSESSDSG SSSESDGD ENSBTAP00000009958/1-523 KGTWGYRNSH SNRRFRPPKK HDSSESSDSG SSSESDGD ENSTTRP00000003311/1-551 KGSWGYR-PH SKRRFRPPKK HDS--SSSDS SSSDSDGD bmy_22258T0/1-635 KGSWGYRKPH SNRRFRPPKK HDSSESSDSG SSSDSDGD BACU010630/1-427 KGSWGYRKPH SNRRFRPPKK HDSSESSDSG SSSESDGD